Wall clock time and date at job start Mon Mar 30 2020 18:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48505 * 109.47157 * 269.99775 * 3 2 1 5 5 H 1.48496 * 109.47225 * 30.00050 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00173 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00221 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 60.00267 * 9 7 2 11 11 O 1.45200 * 109.47232 * 180.02562 * 9 7 2 12 12 C 1.34232 * 117.00067 * 210.00033 * 11 9 7 13 13 O 1.20827 * 119.99576 * 359.97438 * 12 11 9 14 14 C 1.50692 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.53897 * 113.58861 * 279.21517 * 14 12 11 16 16 C 1.53421 * 86.82627 * 220.45408 * 15 14 12 17 17 C 1.52455 * 128.60824 * 165.09549 * 16 15 14 18 18 C 1.52460 * 128.52358 * 245.01603 * 16 15 14 19 19 C 1.53262 * 87.71856 * 25.01788 * 16 15 14 20 20 C 1.52997 * 109.47212 * 300.00211 * 9 7 2 21 21 C 1.52999 * 117.50101 * 248.74929 * 20 9 7 22 22 C 1.52996 * 117.50050 * 180.08788 * 20 9 7 23 23 H 0.96997 * 120.00462 * 0.02562 * 1 2 3 24 24 H 1.08997 * 112.83400 * 50.33221 * 14 12 11 25 25 H 1.08997 * 113.64352 * 334.92802 * 15 14 12 26 26 H 1.09000 * 113.64358 * 105.92796 * 15 14 12 27 27 H 1.08995 * 117.51451 * 224.96536 * 17 16 15 28 28 H 1.09007 * 117.50945 * 10.06627 * 17 16 15 29 29 H 1.09006 * 117.50609 * 349.80299 * 18 16 15 30 30 H 1.08994 * 117.51931 * 134.86421 * 18 16 15 31 31 H 1.09003 * 113.64565 * 220.48534 * 19 16 15 32 32 H 1.09000 * 113.72729 * 89.49431 * 19 16 15 33 33 H 1.09002 * 115.54867 * 34.41541 * 20 9 7 34 34 H 1.08998 * 117.49862 * 359.97438 * 21 20 9 35 35 H 1.09000 * 117.50295 * 145.02180 * 21 20 9 36 36 H 1.09005 * 117.49713 * 214.98330 * 22 20 9 37 37 H 1.08996 * 117.49883 * 359.97027 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8745 -0.6799 0.8912 11 8 3.9956 -2.5629 0.0010 12 6 5.1751 -2.7923 0.5994 13 8 5.7830 -1.8793 1.1061 14 6 5.7414 -4.1882 0.6383 15 6 5.1359 -5.0678 1.7464 16 6 6.5551 -5.6020 1.9798 17 6 7.0907 -6.3918 3.1688 18 6 7.0834 -7.0168 1.7710 19 6 7.0805 -4.2887 1.3898 20 6 4.0220 -0.4729 -1.2480 21 6 4.7217 -1.3174 -2.3149 22 6 5.5371 -0.3679 -1.4336 23 1 -0.4851 0.8400 -0.0004 24 1 5.7537 -4.6670 -0.3408 25 1 4.7389 -4.4996 2.5876 26 1 4.4400 -5.8204 1.3759 27 1 8.0539 -6.0906 3.5806 28 1 6.3662 -6.7666 3.8918 29 1 6.3540 -7.8027 1.5746 30 1 8.0414 -7.1268 1.2629 31 1 7.9414 -4.4177 0.7338 32 1 7.2263 -3.5025 2.1305 33 1 3.4140 0.3652 -1.5886 34 1 4.8188 -2.3866 -2.1266 35 1 4.5744 -1.0347 -3.3572 36 1 5.9257 0.5393 -1.8964 37 1 6.1701 -0.8120 -0.6655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123465646.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:12 Heat of formation + Delta-G solvation = -26.829306 kcal Electronic energy + Delta-G solvation = -18652.960789 eV Core-core repulsion = 15783.368712 eV Total energy + Delta-G solvation = -2869.592077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92440 -40.18440 -38.29440 -36.64149 -34.92905 -34.57991 -30.82650 -26.84045 -26.56230 -24.66897 -23.34196 -23.27896 -22.25089 -20.90976 -19.36763 -19.08797 -18.43438 -17.83856 -17.41393 -16.66017 -16.14714 -16.03189 -15.55830 -14.94705 -14.74115 -14.24304 -13.78310 -13.58791 -13.46153 -13.20852 -13.03112 -12.71961 -12.58295 -12.43402 -12.28273 -12.15301 -11.91609 -11.54378 -11.46624 -11.30554 -11.14542 -10.93726 -10.79039 -10.66956 -10.55534 -8.45863 -6.53765 1.20074 1.25491 1.28656 1.40592 1.93055 2.18974 2.80912 2.86731 2.96856 3.33834 3.48790 3.62789 3.85168 3.85883 3.90570 3.99427 4.08806 4.11587 4.36068 4.53869 4.70330 4.71578 4.77132 4.79452 4.80687 4.84359 4.98206 5.00690 5.02378 5.09158 5.20570 5.21619 5.29016 5.33255 5.36129 5.66685 6.14618 6.49643 6.90844 7.11680 8.69873 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032621 B = 0.005903 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.127701 B = 4741.997568 C = 5107.252825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.034 3.966 3 Si 0.935 3.065 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.231 3.769 10 H 0.027 0.973 11 O -0.349 6.349 12 C 0.457 3.543 13 O -0.541 6.541 14 C -0.106 4.106 15 C -0.084 4.084 16 C -0.173 4.173 17 C -0.164 4.164 18 C -0.133 4.133 19 C -0.072 4.072 20 C -0.201 4.201 21 C -0.152 4.152 22 C -0.188 4.188 23 H 0.275 0.725 24 H 0.143 0.857 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.959 -10.657 0.519 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.571 4.571 8 H 0.065 0.935 9 C 0.177 3.823 10 H 0.045 0.955 11 O -0.265 6.265 12 C 0.302 3.698 13 O -0.432 6.432 14 C -0.124 4.124 15 C -0.121 4.121 16 C -0.173 4.173 17 C -0.200 4.200 18 C -0.169 4.169 19 C -0.110 4.110 20 C -0.220 4.220 21 C -0.188 4.188 22 C -0.224 4.224 23 H 0.084 0.916 24 H 0.161 0.839 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.924 -10.258 0.653 18.953 hybrid contribution -0.510 1.224 0.143 1.334 sum 15.414 -9.034 0.796 17.884 Atomic orbital electron populations 1.69954 1.07687 1.28748 1.50364 1.25495 0.95499 1.02167 0.93447 0.86045 0.79262 0.79056 0.79651 1.17772 1.20808 1.18086 1.20896 0.89064 0.94380 1.52710 0.93493 1.19993 0.92690 0.76360 0.93304 0.95494 1.86527 1.36132 1.34100 1.69730 1.24388 0.78995 0.92896 0.73555 1.90539 1.60551 1.47303 1.44796 1.22603 0.98885 0.87858 1.03090 1.22421 0.96005 0.97578 0.96098 1.22018 0.95476 0.93676 1.06087 1.22922 1.02945 1.02745 0.91422 1.22940 1.03037 0.92280 0.98663 1.22388 0.94700 0.95470 0.98394 1.23169 0.95122 1.03194 1.00503 1.22903 1.02168 0.97587 0.96176 1.23290 0.93077 1.02661 1.03419 0.91578 0.83891 0.91005 0.89024 0.87812 0.88227 0.87464 0.87015 0.88771 0.90182 0.88444 0.88642 0.86965 0.87291 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.96 21.45 0.30 -57.15 16 2 C 0.03 1.99 5.44 84.66 0.46 2.45 16 3 Si 0.94 45.15 24.48 68.60 1.68 46.83 16 4 H -0.25 -11.28 6.73 99.48 0.67 -10.61 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 7 C -0.53 -31.81 9.48 25.60 0.24 -31.57 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 C 0.23 11.90 2.00 29.85 0.06 11.96 16 10 H 0.03 1.51 6.21 -2.39 -0.01 1.49 16 11 O -0.35 -16.06 8.38 -51.44 -0.43 -16.49 16 12 C 0.46 17.78 6.43 71.23 0.46 18.24 16 13 O -0.54 -23.44 12.95 21.96 0.28 -23.16 16 14 C -0.11 -2.90 4.25 -10.94 -0.05 -2.95 16 15 C -0.08 -2.10 7.66 31.04 0.24 -1.86 16 16 C -0.17 -3.43 3.09 -52.31 -0.16 -3.59 16 17 C -0.16 -2.62 10.53 30.45 0.32 -2.30 16 18 C -0.13 -1.88 10.53 30.46 0.32 -1.56 16 19 C -0.07 -1.68 7.42 30.98 0.23 -1.45 16 20 C -0.20 -9.11 4.45 -10.80 -0.05 -9.15 16 21 C -0.15 -5.54 9.80 30.62 0.30 -5.24 16 22 C -0.19 -7.01 9.85 30.62 0.30 -6.71 16 23 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.14 3.26 8.14 -2.39 -0.02 3.24 16 25 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.52 8.14 -2.38 -0.02 1.51 16 29 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.18 7.44 -2.39 -0.02 2.17 16 33 H 0.10 4.57 4.40 -2.39 -0.01 4.56 16 34 H 0.10 3.42 6.90 -2.39 -0.02 3.40 16 35 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 37 H 0.09 3.69 5.37 -2.39 -0.01 3.68 16 Total: -1.00 -69.05 299.12 5.47 -63.58 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.96 Total: 20.13 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 2.67 Total: -33.74 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.15 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.15 Total: -39.65 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.68 Total: 46.83 kcal Total: -69.05 5.47 -63.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465646.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.747 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds