Wall clock time and date at job start Mon Mar 30 2020 18:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00555 * 2 1 4 4 H 1.48503 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46619 * 299.99800 * 3 2 1 6 6 H 1.48496 * 109.47411 * 59.99404 * 3 2 1 7 7 C 1.37885 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99645 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47067 * 299.99165 * 9 7 2 11 11 O 1.45200 * 109.47024 * 179.97438 * 9 7 2 12 12 C 1.34226 * 117.00244 * 149.99754 * 11 9 7 13 13 O 1.20828 * 120.00108 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00290 * 180.02562 * 12 11 9 15 15 C 1.53896 * 113.58688 * 279.21748 * 14 12 11 16 16 C 1.53424 * 86.82502 * 220.45320 * 15 14 12 17 17 C 1.52457 * 128.60904 * 165.09785 * 16 15 14 18 18 C 1.52455 * 128.51888 * 245.01345 * 16 15 14 19 19 C 1.53260 * 87.72094 * 25.01633 * 16 15 14 20 20 C 1.52996 * 109.47519 * 59.99391 * 9 7 2 21 21 C 1.53002 * 117.49888 * 116.25436 * 20 9 7 22 22 C 1.53000 * 117.50107 * 184.91198 * 20 9 7 23 23 H 0.97007 * 119.99127 * 0.02562 * 1 2 3 24 24 H 1.09001 * 112.83420 * 50.32387 * 14 12 11 25 25 H 1.09007 * 113.64268 * 334.91881 * 15 14 12 26 26 H 1.08992 * 113.64941 * 105.92411 * 15 14 12 27 27 H 1.09002 * 117.51217 * 224.96394 * 17 16 15 28 28 H 1.09001 * 117.51059 * 10.05968 * 17 16 15 29 29 H 1.09003 * 117.51473 * 349.80028 * 18 16 15 30 30 H 1.09003 * 117.51109 * 134.86315 * 18 16 15 31 31 H 1.09000 * 113.64580 * 220.48696 * 19 16 15 32 32 H 1.08996 * 113.72700 * 89.49334 * 19 16 15 33 33 H 1.09002 * 115.54951 * 330.58409 * 20 9 7 34 34 H 1.09000 * 117.49996 * 215.00804 * 21 20 9 35 35 H 1.08999 * 117.49664 * 0.02562 * 21 20 9 36 36 H 1.09008 * 117.49673 * 359.97438 * 22 20 9 37 37 H 1.08999 * 117.49959 * 144.99502 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8904 11 8 2.1943 -3.6029 0.0005 12 6 1.8030 -4.7391 0.5985 13 8 0.7086 -4.8090 1.1057 14 6 2.7292 -5.9272 0.6385 15 6 2.7352 -6.7473 -0.6637 16 6 2.7757 -7.9977 0.2244 17 6 2.5008 -9.4471 -0.1603 18 6 3.8843 -9.0366 0.3514 19 6 2.1192 -7.1606 1.3276 20 6 0.3716 -2.5804 -1.2489 21 6 0.6821 -3.6854 -2.2607 22 6 -0.5640 -3.7842 -1.3773 23 1 -0.4849 0.8402 -0.0004 24 1 3.7262 -5.6744 0.9992 25 1 1.8173 -6.6529 -1.2441 26 1 3.6338 -6.6074 -1.2644 27 1 1.8707 -10.0345 0.5076 28 1 2.4041 -9.6768 -1.2214 29 1 4.6976 -8.9963 -0.3732 30 1 4.1647 -9.3535 1.3560 31 1 2.5249 -7.3516 2.3212 32 1 1.0297 -7.1806 1.3038 33 1 0.0194 -1.6254 -1.6388 34 1 0.5343 -3.4573 -3.3162 35 1 1.5126 -4.3546 -2.0359 36 1 -0.5528 -4.5185 -0.5718 37 1 -1.5318 -3.6211 -1.8516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123465647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:15 Heat of formation + Delta-G solvation = -17.685257 kcal Electronic energy + Delta-G solvation = -18665.756580 eV Core-core repulsion = 15796.561019 eV Total energy + Delta-G solvation = -2869.195561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33942 -38.77274 -36.38581 -34.67320 -33.58759 -32.79263 -28.03402 -25.76043 -25.02188 -23.09930 -22.55130 -21.44674 -20.20251 -18.91014 -18.36768 -17.00876 -16.66211 -15.95416 -15.44797 -15.22129 -15.09241 -14.46679 -13.82578 -13.39840 -12.68062 -12.44926 -12.28994 -12.11236 -11.60171 -11.57621 -11.42978 -11.27817 -11.05266 -10.97809 -10.56881 -10.37231 -10.30740 -10.28196 -10.02534 -9.75240 -9.49600 -9.44075 -9.09256 -8.52234 -8.43678 -6.18184 -4.25186 2.97047 3.23868 3.30853 3.35228 3.52856 3.82773 4.27796 4.34228 4.55749 4.73411 4.80149 4.87095 4.95695 5.14094 5.41672 5.50901 5.61073 5.72880 5.73565 5.77798 5.85313 5.86653 5.98777 6.01888 6.10642 6.14901 6.21451 6.38220 6.45662 6.70369 6.92222 7.02326 7.21415 7.58229 7.61655 7.85740 8.13937 8.65251 8.90633 9.39425 10.89051 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.005461 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.228724 B = 5126.041268 C = 5424.255326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.246 3.754 10 H 0.051 0.949 11 O -0.350 6.350 12 C 0.460 3.540 13 O -0.517 6.517 14 C -0.107 4.107 15 C -0.079 4.079 16 C -0.162 4.162 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.208 4.208 23 H 0.265 0.735 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -14.031 -1.109 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.193 3.807 10 H 0.069 0.931 11 O -0.266 6.266 12 C 0.303 3.697 13 O -0.407 6.407 14 C -0.126 4.126 15 C -0.117 4.117 16 C -0.162 4.162 17 C -0.202 4.202 18 C -0.188 4.188 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.234 4.234 22 C -0.245 4.245 23 H 0.075 0.925 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.844 -13.857 -0.974 14.712 hybrid contribution 0.177 0.971 -0.065 0.989 sum 5.021 -12.886 -1.040 13.869 Atomic orbital electron populations 1.70013 1.05898 1.27156 1.49122 1.24911 0.95036 0.99279 0.94679 0.86267 0.80011 0.82441 0.77728 1.19445 1.20738 1.20760 1.21004 0.93985 0.88395 1.52199 0.91151 1.20145 0.86072 0.80542 0.93915 0.93093 1.86507 1.49112 1.22084 1.68869 1.23181 0.86516 0.84849 0.75129 1.90560 1.22776 1.83406 1.43937 1.22302 0.99790 0.90395 1.00115 1.22428 1.03195 0.91367 0.94686 1.22183 1.03938 0.89917 1.00159 1.22788 0.99025 0.96754 1.01680 1.22782 0.92042 1.01506 1.02514 1.22441 1.01321 0.91187 0.96533 1.22997 0.98749 0.93456 0.97993 1.22825 0.99194 1.05387 0.95988 1.23141 0.93715 1.04574 1.03049 0.92495 0.86299 0.89079 0.90282 0.88719 0.88705 0.88581 0.88632 0.90849 0.88198 0.85605 0.90452 0.89823 0.88680 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 11.66 55.43 0.65 -24.38 16 2 C 0.06 1.74 5.16 -17.82 -0.09 1.65 16 3 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.45 8.90 -34.44 -0.31 -14.76 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.25 6.54 2.39 -27.88 -0.07 6.47 16 10 H 0.05 1.52 7.16 -51.93 -0.37 1.14 16 11 O -0.35 -8.22 8.49 -39.25 -0.33 -8.55 16 12 C 0.46 9.46 6.33 36.00 0.23 9.69 16 13 O -0.52 -11.87 12.86 -18.75 -0.24 -12.11 16 14 C -0.11 -1.62 4.25 -90.85 -0.39 -2.00 16 15 C -0.08 -1.04 7.66 -26.04 -0.20 -1.24 16 16 C -0.16 -1.85 3.09 -154.71 -0.48 -2.33 16 17 C -0.17 -1.59 10.53 -26.95 -0.28 -1.88 16 18 C -0.15 -1.40 10.53 -26.95 -0.28 -1.68 16 19 C -0.08 -1.03 7.42 -26.13 -0.19 -1.22 16 20 C -0.11 -2.82 5.23 -90.62 -0.47 -3.29 16 21 C -0.20 -4.14 9.74 -26.69 -0.26 -4.40 16 22 C -0.21 -4.58 9.87 -26.70 -0.26 -4.85 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.47 7.44 -51.93 -0.39 1.08 16 33 H 0.13 3.41 6.55 -51.93 -0.34 3.07 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.70 6.66 -51.93 -0.35 1.35 16 36 H 0.09 2.17 5.56 -51.92 -0.29 1.88 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -29.63 305.82 -8.90 -38.54 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.50 Total: 5.81 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.06 Total: -19.85 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.65 Total: -24.38 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.57 Total: -20.67 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.63 -8.90 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.851 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds