Wall clock time and date at job start Mon Mar 30 2020 18:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00555 * 2 1 4 4 H 1.48503 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46619 * 299.99800 * 3 2 1 6 6 H 1.48496 * 109.47411 * 59.99404 * 3 2 1 7 7 C 1.37885 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99645 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47067 * 299.99165 * 9 7 2 11 11 O 1.45200 * 109.47024 * 179.97438 * 9 7 2 12 12 C 1.34226 * 117.00244 * 149.99754 * 11 9 7 13 13 O 1.20828 * 120.00108 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00290 * 180.02562 * 12 11 9 15 15 C 1.53896 * 113.58688 * 279.21748 * 14 12 11 16 16 C 1.53424 * 86.82502 * 220.45320 * 15 14 12 17 17 C 1.52457 * 128.60904 * 165.09785 * 16 15 14 18 18 C 1.52455 * 128.51888 * 245.01345 * 16 15 14 19 19 C 1.53260 * 87.72094 * 25.01633 * 16 15 14 20 20 C 1.52996 * 109.47519 * 59.99391 * 9 7 2 21 21 C 1.53002 * 117.49888 * 116.25436 * 20 9 7 22 22 C 1.53000 * 117.50107 * 184.91198 * 20 9 7 23 23 H 0.97007 * 119.99127 * 0.02562 * 1 2 3 24 24 H 1.09001 * 112.83420 * 50.32387 * 14 12 11 25 25 H 1.09007 * 113.64268 * 334.91881 * 15 14 12 26 26 H 1.08992 * 113.64941 * 105.92411 * 15 14 12 27 27 H 1.09002 * 117.51217 * 224.96394 * 17 16 15 28 28 H 1.09001 * 117.51059 * 10.05968 * 17 16 15 29 29 H 1.09003 * 117.51473 * 349.80028 * 18 16 15 30 30 H 1.09003 * 117.51109 * 134.86315 * 18 16 15 31 31 H 1.09000 * 113.64580 * 220.48696 * 19 16 15 32 32 H 1.08996 * 113.72700 * 89.49334 * 19 16 15 33 33 H 1.09002 * 115.54951 * 330.58409 * 20 9 7 34 34 H 1.09000 * 117.49996 * 215.00804 * 21 20 9 35 35 H 1.08999 * 117.49664 * 0.02562 * 21 20 9 36 36 H 1.09008 * 117.49673 * 359.97438 * 22 20 9 37 37 H 1.08999 * 117.49959 * 144.99502 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8904 11 8 2.1943 -3.6029 0.0005 12 6 1.8030 -4.7391 0.5985 13 8 0.7086 -4.8090 1.1057 14 6 2.7292 -5.9272 0.6385 15 6 2.7352 -6.7473 -0.6637 16 6 2.7757 -7.9977 0.2244 17 6 2.5008 -9.4471 -0.1603 18 6 3.8843 -9.0366 0.3514 19 6 2.1192 -7.1606 1.3276 20 6 0.3716 -2.5804 -1.2489 21 6 0.6821 -3.6854 -2.2607 22 6 -0.5640 -3.7842 -1.3773 23 1 -0.4849 0.8402 -0.0004 24 1 3.7262 -5.6744 0.9992 25 1 1.8173 -6.6529 -1.2441 26 1 3.6338 -6.6074 -1.2644 27 1 1.8707 -10.0345 0.5076 28 1 2.4041 -9.6768 -1.2214 29 1 4.6976 -8.9963 -0.3732 30 1 4.1647 -9.3535 1.3560 31 1 2.5249 -7.3516 2.3212 32 1 1.0297 -7.1806 1.3038 33 1 0.0194 -1.6254 -1.6388 34 1 0.5343 -3.4573 -3.3162 35 1 1.5126 -4.3546 -2.0359 36 1 -0.5528 -4.5185 -0.5718 37 1 -1.5318 -3.6211 -1.8516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123465647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:15 Heat of formation + Delta-G solvation = -32.221692 kcal Electronic energy + Delta-G solvation = -18666.386927 eV Core-core repulsion = 15796.561019 eV Total energy + Delta-G solvation = -2869.825909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83031 -40.07127 -38.14120 -36.49651 -34.89353 -34.55875 -30.05070 -26.82730 -26.52065 -24.99785 -23.27482 -23.21474 -21.84451 -20.72220 -19.36910 -18.83066 -18.43417 -17.63776 -17.18800 -16.47573 -16.13448 -16.02179 -15.55391 -14.93667 -14.36671 -13.93962 -13.62105 -13.43768 -13.23692 -13.03067 -12.90836 -12.81356 -12.57378 -12.33068 -12.26847 -12.24259 -11.92153 -11.48436 -11.34961 -11.28762 -11.12210 -10.91650 -10.54596 -10.48967 -10.44070 -8.27510 -6.44129 1.33555 1.41404 1.41885 1.55645 2.02902 2.41790 2.88849 3.01085 3.13412 3.35407 3.52275 3.64446 3.87122 3.96607 4.05405 4.19986 4.25610 4.28088 4.37905 4.70162 4.74988 4.78011 4.80555 4.85297 4.90920 4.97116 5.02063 5.03464 5.22173 5.23382 5.28089 5.31608 5.34299 5.51831 5.55857 5.90494 6.12795 6.61732 7.01519 7.27248 8.80201 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.005461 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.228724 B = 5126.041268 C = 5424.255326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.252 3.748 10 H 0.003 0.997 11 O -0.357 6.357 12 C 0.454 3.546 13 O -0.547 6.547 14 C -0.109 4.109 15 C -0.076 4.076 16 C -0.171 4.171 17 C -0.161 4.161 18 C -0.134 4.134 19 C -0.077 4.077 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.199 4.199 23 H 0.269 0.731 24 H 0.138 0.862 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 -15.304 -2.019 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.199 3.801 10 H 0.021 0.979 11 O -0.273 6.273 12 C 0.299 3.701 13 O -0.438 6.438 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.171 4.171 17 C -0.198 4.198 18 C -0.171 4.171 19 C -0.114 4.114 20 C -0.163 4.163 21 C -0.203 4.203 22 C -0.236 4.236 23 H 0.078 0.922 24 H 0.156 0.844 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.567 -15.159 -1.886 16.628 hybrid contribution -0.400 1.298 0.268 1.384 sum 6.166 -13.861 -1.618 15.257 Atomic orbital electron populations 1.70138 1.07456 1.28245 1.49236 1.25810 0.95882 1.02760 0.93710 0.85190 0.78850 0.77661 0.78046 1.18678 1.19730 1.20206 1.21286 0.93971 0.89701 1.53310 0.91530 1.19726 0.86076 0.81498 0.92809 0.97902 1.86499 1.48521 1.22574 1.69743 1.24363 0.87092 0.84983 0.73677 1.90540 1.24540 1.83746 1.45016 1.22599 0.99337 0.88176 1.02627 1.22401 1.03297 0.91737 0.93884 1.21996 1.06479 0.90288 0.98377 1.22921 0.99637 0.94767 1.02495 1.22942 0.91865 0.98638 1.03610 1.22391 1.00197 0.90741 0.98073 1.22691 1.00937 0.93639 0.99052 1.22905 0.98456 1.02394 0.96543 1.23111 0.94902 1.02467 1.03147 0.92191 0.84389 0.90510 0.88588 0.88069 0.87850 0.87184 0.87379 0.89396 0.90381 0.88128 0.87769 0.89083 0.89790 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.19 11.66 21.45 0.25 -52.94 16 2 C 0.02 1.03 5.16 84.66 0.44 1.47 16 3 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.37 8.90 25.60 0.23 -31.14 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.25 14.01 2.39 29.85 0.07 14.08 16 10 H 0.00 0.21 7.16 -2.39 -0.02 0.19 16 11 O -0.36 -17.26 8.49 -51.38 -0.44 -17.69 16 12 C 0.45 19.12 6.33 71.23 0.45 19.57 16 13 O -0.55 -26.31 12.86 21.96 0.28 -26.02 16 14 C -0.11 -3.20 4.25 -10.94 -0.05 -3.25 16 15 C -0.08 -1.86 7.66 31.04 0.24 -1.62 16 16 C -0.17 -3.50 3.09 -52.31 -0.16 -3.66 16 17 C -0.16 -2.61 10.53 30.45 0.32 -2.29 16 18 C -0.13 -1.96 10.53 30.45 0.32 -1.64 16 19 C -0.08 -1.96 7.42 30.98 0.23 -1.73 16 20 C -0.14 -7.38 5.23 -10.79 -0.06 -7.44 16 21 C -0.17 -6.86 9.74 30.62 0.30 -6.56 16 22 C -0.20 -8.87 9.87 30.62 0.30 -8.57 16 23 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 24 H 0.14 3.54 8.14 -2.39 -0.02 3.52 16 25 H 0.08 2.09 8.09 -2.38 -0.02 2.07 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.33 7.44 -2.39 -0.02 2.31 16 33 H 0.10 5.65 6.55 -2.39 -0.02 5.63 16 34 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.09 3.61 6.66 -2.39 -0.02 3.59 16 36 H 0.08 3.94 5.56 -2.38 -0.01 3.92 16 37 H 0.09 3.77 8.14 -2.39 -0.02 3.76 16 Total: -1.00 -66.63 305.82 5.81 -60.82 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.05 Total: 23.30 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 2.63 Total: -32.79 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.25 Total: -52.94 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.15 Total: -43.72 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.63 5.81 -60.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.599 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds