Wall clock time and date at job start Mon Mar 30 2020 18:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 C 1.50701 * 126.34173 * 359.76832 * 3 2 1 5 5 N 1.46502 * 109.46547 * 90.00728 * 4 3 2 6 6 C 1.34780 * 119.99497 * 179.97438 * 5 4 3 7 7 O 1.21687 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.46380 * 120.00046 * 179.97438 * 6 5 4 9 9 H 1.08003 * 119.99137 * 0.02562 * 8 6 5 10 10 C 1.40045 * 120.00395 * 180.02562 * 8 6 5 11 11 N 1.30675 * 119.99591 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00383 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47204 * 59.99520 * 12 10 8 14 14 H 1.48501 * 109.47520 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46872 * 299.99906 * 12 10 8 16 16 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 17 17 N 1.28595 * 109.67181 * 359.97438 * 16 3 2 18 18 C 1.30528 * 109.67405 * 0.02562 * 17 16 3 19 19 C 1.50701 * 126.34540 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.50138 * 8.74495 * 19 18 17 21 21 C 1.52998 * 117.49887 * 300.08360 * 19 18 17 22 22 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 23 23 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 24 24 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 25 25 H 1.09005 * 109.47105 * 210.00190 * 4 3 2 26 26 H 1.08997 * 109.47618 * 330.00482 * 4 3 2 27 27 H 0.96997 * 120.00766 * 359.97438 * 5 4 3 28 28 H 0.97002 * 119.99462 * 179.97438 * 11 10 8 29 29 H 1.08997 * 115.54894 * 154.41456 * 19 18 17 30 30 H 1.09003 * 117.49964 * 0.02562 * 20 19 18 31 31 H 1.09000 * 117.49877 * 145.01826 * 20 19 18 32 32 H 1.08998 * 117.50244 * 214.97727 * 21 19 18 33 33 H 1.08999 * 117.49963 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 6 1.8477 2.5260 -0.0049 5 7 1.7033 2.9971 1.3748 6 6 1.3228 4.2672 1.6168 7 8 1.0988 5.0225 0.6893 8 6 1.1780 4.7378 2.9952 9 1 1.3765 4.0673 3.8183 10 6 0.7821 6.0574 3.2468 11 7 0.5425 6.8687 2.2508 12 14 0.5980 6.6582 5.0059 13 1 1.8994 6.5336 5.7103 14 1 0.1725 8.0810 5.0011 15 1 -0.4237 5.8378 5.7047 16 7 3.5091 0.6429 0.0057 17 7 3.5090 -0.6430 0.0097 18 6 2.2799 -1.0824 0.0063 19 6 1.8475 -2.5261 0.0086 20 6 2.9290 -3.5871 0.2219 21 6 2.3009 -3.4012 -1.1616 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3634 -0.8896 0.5143 24 1 -0.3633 0.8903 0.5134 25 1 2.5977 3.1282 -0.5178 26 1 0.8925 2.6175 -0.5219 27 1 1.8815 2.3950 2.1141 28 1 0.2680 7.7826 2.4250 29 1 0.8614 -2.7207 0.4301 30 1 3.9532 -3.2411 0.3610 31 1 2.6541 -4.4800 0.7834 32 1 1.6133 -4.1719 -1.5098 33 1 2.9116 -2.9327 -1.9334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137924537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:18 Heat of formation + Delta-G solvation = 64.853841 kcal Electronic energy + Delta-G solvation = -17627.132142 eV Core-core repulsion = 14690.268152 eV Total energy + Delta-G solvation = -2936.863990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.04788 -37.54481 -37.22809 -35.04453 -33.59166 -32.38612 -30.33026 -27.75909 -27.06046 -25.16617 -24.12512 -22.63565 -20.87889 -20.19040 -19.77644 -17.56172 -17.06711 -16.31134 -15.72875 -15.38087 -15.00662 -14.46295 -14.07998 -13.74681 -13.44100 -13.26686 -12.91813 -12.36243 -12.10821 -11.79386 -11.58983 -11.35988 -11.23994 -11.15272 -10.95801 -10.82384 -10.52364 -10.30751 -10.16526 -10.08573 -8.89942 -8.89501 -7.71169 -7.69001 -6.24736 -4.70744 1.76303 2.46622 2.88022 3.13502 3.18799 3.20806 3.65384 4.06931 4.09599 4.39465 4.51467 4.53458 4.64896 4.66628 4.75273 4.93731 5.02573 5.21009 5.31146 5.37776 5.52552 5.67877 5.77501 5.92072 5.98594 6.04244 6.28387 6.31029 6.89474 7.38226 7.76671 7.92611 8.24238 8.87863 8.96420 9.39063 10.51231 10.69203 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.004307 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.756016 B = 6499.126378 C = 6642.389829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.465 5.465 3 C 0.178 3.822 4 C 0.219 3.781 5 N -0.762 5.762 6 C 0.557 3.443 7 O -0.578 6.578 8 C -0.543 4.543 9 H 0.068 0.932 10 C 0.088 3.912 11 N -0.766 5.766 12 Si 0.910 3.090 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.268 1.268 16 N -0.281 5.281 17 N -0.295 5.295 18 C 0.195 3.805 19 C -0.085 4.085 20 C -0.149 4.149 21 C -0.159 4.159 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.382 0.618 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -18.303 -3.154 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.156 5.156 3 C -0.089 4.089 4 C 0.092 3.908 5 N -0.420 5.420 6 C 0.361 3.639 7 O -0.460 6.460 8 C -0.579 4.579 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.395 5.395 12 Si 0.734 3.266 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.193 1.193 16 N -0.122 5.122 17 N -0.135 5.135 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.187 4.187 21 C -0.197 4.197 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.214 0.786 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.278 -17.493 -3.928 17.974 hybrid contribution -1.523 0.014 1.228 1.957 sum -2.802 -17.479 -2.700 17.907 Atomic orbital electron populations 1.22156 0.75314 1.05576 1.04230 1.45911 1.09140 1.06217 1.54292 1.25188 0.87052 0.92486 1.04202 1.19178 1.00844 0.81927 0.88889 1.46242 1.77000 1.14976 1.03773 1.18243 0.76579 0.78314 0.90732 1.90615 1.55086 1.54168 1.46178 1.20808 1.49260 0.97149 0.90726 0.91407 1.25701 0.92918 0.96331 0.98268 1.70005 1.32260 1.05348 1.31870 0.86399 0.79384 0.77961 0.82819 1.19190 1.20488 1.19304 1.74311 1.17213 1.02539 1.18139 1.74179 1.16876 1.03500 1.18982 1.23645 0.87517 0.90437 1.05530 1.20042 1.00302 0.83556 1.06701 1.23026 0.98614 0.98251 0.98788 1.23072 1.03466 1.01150 0.92040 0.89892 0.89253 0.88180 0.89551 0.91376 0.78612 0.91926 0.86054 0.87142 0.87915 0.87926 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.71 59.85 0.64 1.33 16 2 N -0.47 -6.62 3.15 -118.00 -0.37 -6.99 16 3 C 0.18 3.15 7.40 -154.99 -1.15 2.00 16 4 C 0.22 4.27 5.84 -5.19 -0.03 4.24 16 5 N -0.76 -17.03 5.54 -62.90 -0.35 -17.38 16 6 C 0.56 15.54 7.75 -12.98 -0.10 15.44 16 7 O -0.58 -18.25 15.02 5.20 0.08 -18.17 16 8 C -0.54 -15.13 9.54 -35.63 -0.34 -15.47 16 9 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.62 11.83 55.55 0.66 -21.96 16 12 Si 0.91 19.91 29.56 -169.99 -5.02 14.89 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 N -0.28 -5.53 12.21 32.80 0.40 -5.13 16 17 N -0.29 -5.23 11.83 32.80 0.39 -4.85 16 18 C 0.20 2.79 7.55 -154.98 -1.17 1.62 16 19 C -0.09 -0.83 5.97 -91.77 -0.55 -1.38 16 20 C -0.15 -1.28 10.15 -26.69 -0.27 -1.55 16 21 C -0.16 -1.29 10.24 -26.69 -0.27 -1.57 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 0.63 7.37 -51.93 -0.38 0.25 16 24 H 0.10 1.09 7.82 -51.92 -0.41 0.69 16 25 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 26 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 27 H 0.38 7.94 8.44 -40.82 -0.34 7.60 16 28 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 29 H 0.12 0.89 7.48 -51.93 -0.39 0.50 16 30 H 0.11 1.15 7.92 -51.93 -0.41 0.74 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -35.82 294.86 -7.11 -42.93 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.00 Total: 5.23 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -3.33 Total: 6.99 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.73 Total: -56.31 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.08 Total: -18.17 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.82 -7.11 -42.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137924537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.787 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds