Wall clock time and date at job start Mon Mar 30 2020 18:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31480 * 119.82257 * 2 1 4 4 C 1.32743 * 121.73851 * 179.97438 * 3 2 1 5 5 N 1.38363 * 119.43207 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99800 * 180.02562 * 5 4 3 7 7 C 1.53782 * 113.61459 * 252.22322 * 6 5 4 8 8 C 1.53782 * 87.08303 * 220.01926 * 7 6 5 9 9 F 1.39900 * 113.69133 * 139.99076 * 8 7 6 10 10 C 1.53777 * 87.07870 * 25.43135 * 8 7 6 11 11 C 1.39709 * 121.13142 * 0.25916 * 4 3 2 12 12 C 1.36564 * 119.49619 * 359.48449 * 11 4 3 13 13 C 1.40757 * 119.81257 * 179.97438 * 2 1 3 14 14 C 1.41198 * 120.57033 * 0.04576 * 13 2 1 15 15 H 1.08002 * 120.00228 * 24.87072 * 14 13 2 16 16 C 1.39874 * 119.99980 * 204.87574 * 14 13 2 17 17 N 1.30898 * 120.00069 * 14.68431 * 16 14 13 18 18 Si 1.86804 * 120.00155 * 194.68573 * 16 14 13 19 19 H 1.48497 * 109.46872 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46866 * 119.99718 * 18 16 14 21 21 H 1.48496 * 109.47084 * 239.99979 * 18 16 14 22 22 H 1.08999 * 109.47105 * 89.99654 * 1 2 3 23 23 H 1.08996 * 109.47578 * 209.99592 * 1 2 3 24 24 H 1.08996 * 109.46848 * 330.00032 * 1 2 3 25 25 H 0.96998 * 120.00735 * 359.72751 * 5 4 3 26 26 H 1.09000 * 112.85112 * 23.52573 * 6 5 4 27 27 H 1.09001 * 113.61646 * 334.56518 * 7 6 5 28 28 H 1.09000 * 113.61849 * 105.46792 * 7 6 5 29 29 H 1.09005 * 113.61029 * 270.88164 * 8 7 6 30 30 H 1.09000 * 113.61426 * 220.02134 * 10 8 7 31 31 H 1.08996 * 113.69228 * 89.13059 * 10 8 7 32 32 H 1.08004 * 120.25015 * 179.72019 * 11 4 3 33 33 H 1.07994 * 120.79326 * 180.24195 * 12 11 4 34 34 H 0.97002 * 120.00246 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1851 0.0005 5 7 4.1267 2.4122 -0.0001 6 6 5.5904 2.4756 -0.0001 7 6 6.1872 2.9327 1.3415 8 6 7.1990 3.7516 0.5226 9 9 7.4694 5.0134 1.0630 10 6 6.1507 3.7750 -0.6022 11 6 4.2494 0.0140 -0.0043 12 6 3.6198 -1.1978 0.0010 13 6 2.2068 -1.2213 0.0005 14 6 1.5089 -2.4488 0.0001 15 1 0.5046 -2.4989 -0.3939 16 6 2.1183 -3.5999 0.5102 17 7 3.1998 -3.4989 1.2407 18 14 1.3889 -5.2812 0.1488 19 1 0.1753 -5.1238 -0.6923 20 1 2.3880 -6.1094 -0.5730 21 1 1.0232 -5.9468 1.4249 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 3.6059 3.2305 -0.0048 26 1 6.0532 1.5737 -0.4006 27 1 5.5086 3.5451 1.9353 28 1 6.6416 2.1249 1.9152 29 1 8.1026 3.1985 0.2661 30 1 6.5756 3.6471 -1.5978 31 1 5.4615 4.6172 -0.5412 32 1 5.3281 0.0667 -0.0084 33 1 4.1881 -2.1161 0.0013 34 1 3.6222 -4.2972 1.5947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154842875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:29 Heat of formation + Delta-G solvation = -18.839931 kcal Electronic energy + Delta-G solvation = -17671.018097 eV Core-core repulsion = 14710.604911 eV Total energy + Delta-G solvation = -2960.413186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.53619 -40.65780 -39.25002 -36.08872 -34.60798 -32.78815 -31.47473 -28.68156 -26.84276 -26.33668 -24.94633 -23.11227 -22.05117 -20.66041 -19.10433 -18.15417 -17.81638 -16.85532 -16.81015 -16.35702 -15.92436 -15.41259 -15.14003 -14.94110 -14.50478 -14.16434 -13.65728 -13.56646 -13.45900 -13.43732 -13.14824 -12.81379 -12.62110 -12.57103 -12.21670 -12.12280 -11.66029 -11.46394 -11.31748 -11.14886 -10.33493 -10.00616 -9.87663 -8.62201 -8.35538 -6.08797 0.89020 1.14876 1.43243 1.56253 1.57939 2.26338 2.59849 2.84076 3.33935 3.42637 3.72010 3.82332 3.90347 3.92722 4.15353 4.48004 4.62387 4.69361 4.73482 4.77068 4.79907 4.93496 4.97631 5.01561 5.07820 5.22805 5.35202 5.39919 5.57151 5.70798 5.92640 6.03082 6.52647 6.66308 6.87480 6.97465 7.15454 7.89437 8.43538 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.004848 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.203100 B = 5774.191342 C = 6332.477848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.018 3.982 3 N -0.539 5.539 4 C 0.287 3.713 5 N -0.721 5.721 6 C 0.140 3.860 7 C -0.183 4.183 8 C 0.073 3.927 9 F -0.221 7.221 10 C -0.158 4.158 11 C -0.215 4.215 12 C -0.109 4.109 13 C -0.003 4.003 14 C -0.480 4.480 15 H 0.082 0.918 16 C 0.032 3.968 17 N -0.841 5.841 18 Si 0.979 3.021 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.271 1.271 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.395 0.605 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 6.888 -2.426 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 N -0.256 5.256 4 C 0.053 3.947 5 N -0.358 5.358 6 C 0.033 3.967 7 C -0.223 4.223 8 C 0.036 3.964 9 F -0.202 7.202 10 C -0.197 4.197 11 C -0.238 4.238 12 C -0.135 4.135 13 C -0.008 4.008 14 C -0.511 4.511 15 H 0.100 0.900 16 C -0.181 4.181 17 N -0.469 5.469 18 Si 0.801 3.199 19 H -0.180 1.180 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.230 0.770 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.279 7.458 -2.284 10.013 hybrid contribution 0.076 -1.190 0.233 1.215 sum 6.354 6.268 -2.051 9.158 Atomic orbital electron populations 1.20231 0.89158 1.01499 1.01253 1.21268 0.96428 0.87327 1.06964 1.66440 1.08257 1.31047 1.19838 1.18101 0.88053 0.86672 1.01894 1.43678 1.04367 1.03542 1.84185 1.22109 0.79916 0.98847 0.95843 1.24250 0.98537 1.00617 0.98902 1.23044 0.98771 0.79913 0.94624 1.92765 1.95617 1.44277 1.87557 1.23958 0.97824 0.97955 0.99922 1.21050 0.99640 0.92216 1.10936 1.21379 0.95021 0.96817 1.00316 1.18526 0.92968 0.94041 0.95249 1.19607 1.01850 0.92772 1.36909 0.90036 1.26670 0.94761 1.04629 0.92012 1.69867 1.19111 1.32460 1.25461 0.85187 0.79290 0.76513 0.78905 1.18030 1.19276 1.19570 0.92016 0.91565 0.92247 0.77003 0.87077 0.89948 0.89914 0.84238 0.87929 0.88794 0.85685 0.86535 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.71 9.58 71.23 0.68 -2.03 16 2 C 0.02 0.91 6.86 43.23 0.30 1.21 16 3 N -0.54 -26.18 10.29 -179.37 -1.85 -28.03 16 4 C 0.29 12.73 7.64 133.32 1.02 13.74 16 5 N -0.72 -24.58 5.50 -321.84 -1.77 -26.35 16 6 C 0.14 3.60 4.02 45.52 0.18 3.78 16 7 C -0.18 -4.32 7.77 31.12 0.24 -4.08 16 8 C 0.07 1.38 5.67 31.12 0.18 1.56 16 9 F -0.22 -5.24 17.41 44.97 0.78 -4.46 16 10 C -0.16 -3.07 7.73 31.12 0.24 -2.83 16 11 C -0.21 -9.75 9.21 22.23 0.20 -9.55 16 12 C -0.11 -5.64 8.73 22.64 0.20 -5.44 16 13 C 0.00 -0.15 5.59 -21.18 -0.12 -0.27 16 14 C -0.48 -25.28 8.16 23.39 0.19 -25.08 16 15 H 0.08 4.10 6.84 -2.91 -0.02 4.08 16 16 C 0.03 1.57 5.22 85.23 0.45 2.02 16 17 N -0.84 -43.54 10.83 21.82 0.24 -43.31 16 18 Si 0.98 37.86 29.58 68.60 2.03 39.89 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.07 2.79 6.75 -2.39 -0.02 2.78 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 25 H 0.40 12.77 8.84 -92.71 -0.82 11.95 16 26 H 0.11 2.82 6.04 -2.39 -0.01 2.81 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 32 H 0.13 4.81 5.97 -2.91 -0.02 4.79 16 33 H 0.12 6.25 6.17 -2.91 -0.02 6.23 16 34 H 0.28 13.35 8.30 -92.71 -0.77 12.59 16 Total: -1.00 -61.19 286.99 3.50 -57.69 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.31 Total: 31.54 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.76 Total: -26.97 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.38 Total: -97.69 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -61.19 3.50 -57.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154842875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.851 kcal (2) G-P(sol) polarization free energy of solvation -61.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds