Wall clock time and date at job start Mon Mar 30 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38689 * 119.27314 * 2 1 4 4 C 1.38007 * 119.62307 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28720 * 359.97438 * 4 3 2 6 6 C 1.41013 * 120.70641 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99902 * 204.92271 * 6 5 4 8 8 C 1.39940 * 120.00237 * 24.91915 * 6 5 4 9 9 N 1.30865 * 120.00058 * 14.48367 * 8 6 5 10 10 Si 1.86807 * 119.99990 * 194.48694 * 8 6 5 11 11 H 1.48502 * 109.47214 * 60.00123 * 10 8 6 12 12 H 1.48500 * 109.47102 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.46899 * 299.99592 * 10 8 6 14 14 C 1.41711 * 118.58729 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90775 * 180.02562 * 14 5 4 16 16 C 1.46497 * 119.99910 * 179.97438 * 15 14 5 17 17 C 1.53786 * 113.61266 * 252.49801 * 16 15 14 18 18 C 1.53783 * 87.07907 * 220.01984 * 17 16 15 19 19 F 1.39891 * 113.61781 * 270.88162 * 18 17 16 20 20 C 1.53778 * 87.08154 * 25.43707 * 18 17 16 21 21 N 1.31970 * 119.28001 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47090 * 270.00389 * 1 2 3 23 23 H 1.09003 * 109.47448 * 30.00348 * 1 2 3 24 24 H 1.09003 * 109.47043 * 150.00625 * 1 2 3 25 25 H 1.07997 * 120.18758 * 359.97312 * 3 2 1 26 26 H 1.08006 * 120.85538 * 179.97438 * 4 3 2 27 27 H 0.97003 * 120.00014 * 180.02562 * 9 8 6 28 28 H 0.97000 * 119.99275 * 359.97438 * 15 14 5 29 29 H 1.08993 * 112.85065 * 23.80642 * 16 15 14 30 30 H 1.09000 * 113.61689 * 334.57013 * 17 16 15 31 31 H 1.08999 * 113.61449 * 105.47533 * 17 16 15 32 32 H 1.09003 * 113.68560 * 139.99254 * 18 17 16 33 33 H 1.09002 * 113.61293 * 220.01787 * 20 18 17 34 34 H 1.09003 * 113.69654 * 89.12390 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2098 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0005 6 6 5.6501 -0.0702 -0.0016 7 1 6.1588 -0.9376 -0.3958 8 6 6.3895 1.0031 0.5080 9 7 5.7996 1.9174 1.2350 10 14 8.2186 1.1307 0.1503 11 1 8.4314 1.2131 -1.3171 12 1 8.7658 2.3496 0.7984 13 1 8.9122 -0.0685 0.6847 14 6 3.4738 -1.2108 -0.0005 15 7 4.1075 -2.4377 0.0001 16 6 3.3164 -3.6707 0.0006 17 6 3.3404 -4.4174 1.3448 18 6 3.4307 -5.7188 0.5306 19 9 2.1841 -6.2592 0.1976 20 6 4.0586 -4.8790 -0.5942 21 7 2.1524 -1.1511 0.0005 22 1 -0.3633 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8901 -0.5137 25 1 1.6364 2.1399 -0.0004 26 1 4.1134 2.1488 -0.0010 27 1 6.3121 2.6616 1.5879 28 1 5.0764 -2.4830 0.0001 29 1 2.3144 -3.5309 -0.4048 30 1 4.2292 -4.2132 1.9419 31 1 2.4158 -4.3217 1.9140 32 1 4.1112 -6.4558 0.9571 33 1 3.7138 -5.1561 -1.5904 34 1 5.1439 -4.8004 -0.5286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154843088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:32 Heat of formation + Delta-G solvation = -20.418596 kcal Electronic energy + Delta-G solvation = -18008.056790 eV Core-core repulsion = 15047.575148 eV Total energy + Delta-G solvation = -2960.481642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.62771 -40.54332 -38.98109 -36.01076 -34.89970 -32.52896 -31.00741 -29.38582 -26.77302 -26.13408 -24.97148 -22.62745 -22.54892 -20.55728 -19.11973 -18.05783 -17.78455 -16.88435 -16.66552 -16.11517 -15.90240 -15.57710 -15.10410 -14.87250 -14.62279 -14.14719 -13.81745 -13.55890 -13.38999 -13.16531 -13.13996 -12.90128 -12.62922 -12.57002 -12.45471 -12.14801 -11.65826 -11.41951 -11.17706 -11.08305 -10.52999 -9.93636 -9.74432 -8.61447 -8.29026 -6.12257 0.91798 1.22512 1.41292 1.51364 1.55327 2.22909 2.77644 2.85282 3.31657 3.36954 3.74252 3.78415 3.99631 4.05352 4.22867 4.52087 4.65975 4.72828 4.73668 4.80784 4.95444 4.95704 4.99017 5.01759 5.06476 5.18827 5.27095 5.40454 5.48330 5.83347 5.91252 6.14166 6.43481 6.77647 6.87188 6.93236 7.16615 7.95567 8.40829 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.007645 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.724450 B = 3661.827020 C = 5048.038047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.019 3.981 3 C -0.200 4.200 4 C -0.147 4.147 5 C -0.006 4.006 6 C -0.478 4.478 7 H 0.084 0.916 8 C 0.032 3.968 9 N -0.835 5.835 10 Si 0.982 3.018 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.255 1.255 14 C 0.299 3.701 15 N -0.710 5.710 16 C 0.135 3.865 17 C -0.177 4.177 18 C 0.075 3.925 19 F -0.213 7.213 20 C -0.159 4.159 21 N -0.542 5.542 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.284 0.716 28 H 0.407 0.593 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -8.980 -1.076 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C -0.223 4.223 4 C -0.173 4.173 5 C -0.013 4.013 6 C -0.510 4.510 7 H 0.102 0.898 8 C -0.182 4.182 9 N -0.463 5.463 10 Si 0.803 3.197 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.179 1.179 14 C 0.060 3.940 15 N -0.347 5.347 16 C 0.028 3.972 17 C -0.217 4.217 18 C 0.039 3.961 19 F -0.194 7.194 20 C -0.198 4.198 21 N -0.261 5.261 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.095 0.905 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.387 -9.613 -0.953 9.668 hybrid contribution 1.330 1.372 0.066 1.912 sum 0.942 -8.241 -0.887 8.342 Atomic orbital electron populations 1.20342 0.88407 1.02208 1.01684 1.20777 0.96692 0.87558 1.06490 1.21485 0.94879 0.98022 1.07886 1.21446 0.93197 0.98034 1.04638 1.18286 0.94914 0.90852 0.97228 1.19379 0.90805 1.03812 1.36971 0.89822 1.26680 1.05388 0.94121 0.91973 1.69876 1.40287 1.11112 1.25000 0.85247 0.76268 0.78791 0.79376 1.18801 1.20010 1.17946 1.18748 0.88250 0.86760 1.00227 1.43769 1.07470 1.00763 1.82696 1.22257 0.95965 0.82942 0.96002 1.24165 1.03598 0.95405 0.98524 1.22322 0.81460 0.94985 0.97329 1.92772 1.45568 1.87475 1.93622 1.23991 1.02474 0.94063 0.99238 1.66498 1.08364 1.30294 1.20921 0.91900 0.90485 0.92164 0.86652 0.87023 0.90504 0.75571 0.89777 0.87610 0.91880 0.84826 0.89830 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.44 10.15 71.24 0.72 -1.72 16 2 C 0.02 0.89 6.79 42.65 0.29 1.18 16 3 C -0.20 -9.68 9.69 22.32 0.22 -9.47 16 4 C -0.15 -7.88 8.79 22.89 0.20 -7.67 16 5 C -0.01 -0.31 5.60 -21.06 -0.12 -0.43 16 6 C -0.48 -24.37 8.53 23.36 0.20 -24.17 16 7 H 0.08 3.91 6.67 -2.91 -0.02 3.89 16 8 C 0.03 1.55 5.23 85.25 0.45 1.99 16 9 N -0.84 -43.36 10.83 21.83 0.24 -43.13 16 10 Si 0.98 36.95 29.58 68.60 2.03 38.98 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 12 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 13 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 14 C 0.30 14.79 7.52 134.05 1.01 15.79 16 15 N -0.71 -28.69 5.41 -320.64 -1.73 -30.42 16 16 C 0.14 4.56 4.24 45.52 0.19 4.75 16 17 C -0.18 -5.05 7.77 31.12 0.24 -4.81 16 18 C 0.08 1.73 5.69 31.12 0.18 1.91 16 19 F -0.21 -5.98 17.38 44.97 0.78 -5.20 16 20 C -0.16 -3.85 7.73 31.12 0.24 -3.61 16 21 N -0.54 -26.54 9.00 -179.57 -1.62 -28.16 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 23 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 26 H 0.11 6.23 6.17 -2.91 -0.02 6.21 16 27 H 0.28 13.52 8.30 -92.71 -0.77 12.75 16 28 H 0.41 15.40 6.93 -92.71 -0.64 14.76 16 29 H 0.08 3.30 7.40 -2.39 -0.02 3.28 16 30 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.12 2.41 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -61.64 289.82 3.99 -57.65 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.48 Total: 36.54 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.82 Total: -26.26 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.11 Total: -101.71 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -61.64 3.99 -57.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154843088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.227 kcal (2) G-P(sol) polarization free energy of solvation -61.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds