Wall clock time and date at job start Mon Mar 30 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 H 1.08997 * 109.46689 * 305.07338 * 3 2 1 5 5 C 1.50699 * 109.46993 * 185.07631 * 3 2 1 6 6 H 1.07996 * 119.99992 * 245.46396 * 5 3 2 7 7 C 1.37874 * 119.99879 * 65.46923 * 5 3 2 8 8 N 1.31518 * 119.99832 * 193.26211 * 7 5 3 9 9 Si 1.86800 * 120.00409 * 13.26064 * 7 5 3 10 10 H 1.48501 * 109.46932 * 84.54959 * 9 7 5 11 11 H 1.48498 * 109.47197 * 204.54779 * 9 7 5 12 12 H 1.48504 * 109.47045 * 324.54945 * 9 7 5 13 13 N 1.46501 * 109.47098 * 65.07328 * 3 2 1 14 14 C 1.38505 * 120.00135 * 259.81731 * 13 3 2 15 15 C 1.39605 * 120.04748 * 359.87380 * 14 13 3 16 16 C 1.38288 * 118.02745 * 179.97438 * 15 14 13 17 17 C 1.40070 * 117.99352 * 359.97438 * 16 15 14 18 18 C 1.47864 * 120.09469 * 179.97438 * 17 16 15 19 19 N 1.34774 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21555 * 120.00039 * 0.02562 * 18 17 16 21 21 N 1.32759 * 119.80648 * 0.02562 * 17 16 15 22 22 N 1.28353 * 122.10754 * 359.72365 * 21 17 16 23 23 H 1.09006 * 109.47336 * 182.90013 * 1 2 3 24 24 H 1.09003 * 109.47407 * 302.89974 * 1 2 3 25 25 H 1.09000 * 109.47398 * 62.90194 * 1 2 3 26 26 H 1.09001 * 109.47187 * 240.00318 * 2 1 3 27 27 H 1.09003 * 109.47057 * 119.99843 * 2 1 3 28 28 H 0.96998 * 120.00188 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99442 * 79.54788 * 13 3 2 30 30 H 1.07999 * 120.98227 * 359.94756 * 15 14 13 31 31 H 1.08001 * 121.00306 * 180.02562 * 16 15 14 32 32 H 0.96997 * 120.00075 * 0.02562 * 19 18 17 33 33 H 0.96998 * 119.99960 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6043 1.9819 -0.8411 5 6 3.5417 1.4444 -0.1257 6 1 4.1512 1.8082 0.6882 7 6 4.1374 0.9818 -1.2798 8 7 5.4294 0.7366 -1.3003 9 14 3.1096 0.7030 -2.8145 10 1 2.9713 1.9819 -3.5567 11 1 3.7759 -0.3024 -3.6808 12 1 1.7644 0.2080 -2.4262 13 7 1.6539 2.0970 1.2526 14 6 0.5567 2.9418 1.2830 15 6 -0.1804 3.1724 0.1201 16 6 -1.2681 4.0228 0.1981 17 6 -1.5636 4.6001 1.4397 18 6 -2.7157 5.5168 1.5757 19 7 -2.9980 6.0716 2.7711 20 8 -3.4084 5.7701 0.6094 21 7 -0.8055 4.3226 2.4936 22 7 0.2009 3.5293 2.4202 23 1 -0.3634 -1.0264 0.0520 24 1 -0.3634 0.5582 0.8629 25 1 -0.3634 0.4681 -0.9148 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8485 0.4108 -2.1121 29 1 2.1643 1.9356 2.0614 30 1 0.0911 2.7010 -0.8129 31 1 -1.8720 4.2348 -0.6718 32 1 -2.4450 5.8698 3.5421 33 1 -3.7535 6.6732 2.8603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:42 Heat of formation + Delta-G solvation = 18.942061 kcal Electronic energy + Delta-G solvation = -17994.679800 eV Core-core repulsion = 15055.824926 eV Total energy + Delta-G solvation = -2938.854874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84201 -39.02603 -37.08876 -33.85801 -33.20101 -32.77702 -32.01623 -30.10122 -27.55868 -24.97652 -23.80839 -22.83557 -21.45366 -20.11334 -18.48488 -17.93738 -17.21407 -16.43887 -16.31464 -15.45504 -15.18355 -14.64416 -14.26084 -14.19151 -13.59526 -13.46133 -13.09335 -12.97820 -12.19045 -12.17084 -11.68513 -11.38158 -11.21280 -10.98969 -10.48439 -10.18792 -10.11299 -10.01233 -9.74302 -9.72622 -9.54705 -9.36432 -8.74916 -7.55790 -6.39702 -4.41218 0.96116 1.13172 2.87755 3.07353 3.13712 3.19914 3.36010 3.57578 3.99685 4.13436 4.44288 4.84388 4.88525 4.98973 5.02787 5.28458 5.66991 5.70227 5.81279 5.92038 6.04694 6.20348 6.24445 6.39675 6.52370 6.64979 6.71432 6.97728 7.20454 7.28417 7.43899 8.01565 8.19823 8.20676 8.63885 8.97801 9.19995 10.72350 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.005522 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.424956 B = 5069.755522 C = 5241.081178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.244 3.756 4 H 0.044 0.956 5 C -0.545 4.545 6 H 0.082 0.918 7 C 0.086 3.914 8 N -0.880 5.880 9 Si 0.857 3.143 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.247 1.247 13 N -0.661 5.661 14 C 0.374 3.626 15 C -0.194 4.194 16 C -0.027 4.027 17 C -0.074 4.074 18 C 0.596 3.404 19 N -0.841 5.841 20 O -0.549 6.549 21 N -0.164 5.164 22 N -0.321 5.321 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.270 0.730 29 H 0.409 0.591 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.411 0.589 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 3.844 4.112 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.140 3.860 4 H 0.061 0.939 5 C -0.582 4.582 6 H 0.100 0.900 7 C -0.120 4.120 8 N -0.515 5.515 9 Si 0.683 3.317 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.171 1.171 13 N -0.284 5.284 14 C 0.129 3.871 15 C -0.227 4.227 16 C -0.055 4.055 17 C -0.225 4.225 18 C 0.379 3.621 19 N -0.404 5.404 20 O -0.425 6.425 21 N -0.013 5.013 22 N -0.179 5.179 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.241 0.759 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.230 3.884 4.619 13.638 hybrid contribution -0.353 -0.343 -1.714 1.783 sum -12.583 3.542 2.905 13.391 Atomic orbital electron populations 1.21914 0.97902 1.00605 1.00762 1.22444 0.93413 0.99474 1.02763 1.19330 0.96573 0.88769 0.81302 0.93875 1.20952 0.88146 1.45134 1.04011 0.89988 1.24802 0.94873 0.93774 0.98533 1.69910 1.10472 1.42546 1.28560 0.87361 0.81898 0.78926 0.83558 1.19880 1.20807 1.17147 1.45062 1.25432 1.43416 1.14503 1.20326 0.87748 0.87887 0.91089 1.21960 0.97556 1.03262 0.99927 1.22004 0.94450 0.91192 0.97845 1.21993 1.01174 1.06022 0.93359 1.17513 0.82613 0.78905 0.83020 1.43620 1.34825 1.50165 1.11779 1.90804 1.50877 1.62427 1.38421 1.72737 0.98096 1.04780 1.25650 1.73123 1.12129 1.11128 1.21525 0.93607 0.93525 0.93466 0.90765 0.91889 0.92036 0.75521 0.82862 0.82979 0.75881 0.76722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.79 37.16 0.33 -2.14 16 2 C -0.14 -2.65 4.94 -26.73 -0.13 -2.79 16 3 C 0.24 4.93 1.70 -69.08 -0.12 4.81 16 4 H 0.04 0.87 4.43 -51.93 -0.23 0.64 16 5 C -0.54 -13.49 9.23 -34.44 -0.32 -13.81 16 6 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.09 2.20 5.36 -17.82 -0.10 2.10 16 8 N -0.88 -24.52 13.96 55.43 0.77 -23.75 16 9 Si 0.86 18.61 25.86 -169.99 -4.40 14.22 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.25 -4.85 5.32 56.52 0.30 -4.55 16 13 N -0.66 -12.12 4.78 -54.95 -0.26 -12.38 16 14 C 0.37 6.57 6.67 -154.94 -1.03 5.54 16 15 C -0.19 -3.12 8.18 -39.05 -0.32 -3.44 16 16 C -0.03 -0.40 9.71 -38.88 -0.38 -0.78 16 17 C -0.07 -1.13 6.83 -82.84 -0.57 -1.70 16 18 C 0.60 8.44 8.08 -12.32 -0.10 8.34 16 19 N -0.84 -8.41 8.86 30.53 0.27 -8.14 16 20 O -0.55 -9.19 17.22 5.32 0.09 -9.09 16 21 N -0.16 -2.64 10.73 33.32 0.36 -2.28 16 22 N -0.32 -5.66 11.55 31.21 0.36 -5.30 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.75 6.49 -51.93 -0.34 0.41 16 25 H 0.05 0.72 7.74 -51.93 -0.40 0.32 16 26 H 0.07 1.46 4.70 -51.93 -0.24 1.22 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.41 7.28 8.88 -40.82 -0.36 6.92 16 30 H 0.15 2.38 5.45 -52.49 -0.29 2.09 16 31 H 0.15 2.01 7.71 -52.49 -0.40 1.61 16 32 H 0.41 3.63 8.17 -40.82 -0.33 3.29 16 33 H 0.40 3.07 8.93 -40.82 -0.36 2.71 16 LS Contribution 277.12 15.07 4.18 4.18 Total: -1.00 -28.84 277.12 -4.83 -33.67 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -3.47 Total: 12.75 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.73 Total: -3.86 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 1.50 Total: -51.86 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.40 Total: 14.22 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.84 -4.83 -33.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.609 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds