Wall clock time and date at job start Mon Mar 30 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 H 1.08995 * 109.47238 * 305.73884 * 3 2 1 5 5 C 1.50700 * 109.47240 * 185.73866 * 3 2 1 6 6 H 1.08002 * 119.99898 * 335.21402 * 5 3 2 7 7 C 1.37878 * 120.00239 * 155.21733 * 5 3 2 8 8 N 1.31514 * 119.99590 * 355.33861 * 7 5 3 9 9 Si 1.86801 * 120.00019 * 175.33912 * 7 5 3 10 10 H 1.48503 * 109.46782 * 59.99888 * 9 7 5 11 11 H 1.48499 * 109.46769 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47076 * 299.99805 * 9 7 5 13 13 N 1.46498 * 109.47361 * 65.73671 * 3 2 1 14 14 C 1.38437 * 119.99852 * 275.00337 * 13 3 2 15 15 N 1.32586 * 119.13970 * 359.72462 * 14 13 3 16 16 C 1.32108 * 120.95940 * 179.76097 * 15 14 13 17 17 C 1.38825 * 119.24046 * 0.50531 * 16 15 14 18 18 C 1.39461 * 118.42232 * 359.75262 * 17 16 15 19 19 C 1.48473 * 120.49917 * 180.02562 * 18 17 16 20 20 N 1.34775 * 119.99721 * 179.97438 * 19 18 17 21 21 O 1.21472 * 120.00241 * 359.97436 * 19 18 17 22 22 N 1.32269 * 119.13577 * 179.97438 * 14 13 3 23 23 H 1.09002 * 109.47105 * 299.99831 * 1 2 3 24 24 H 1.08999 * 109.46548 * 59.99761 * 1 2 3 25 25 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47163 * 239.99675 * 2 1 3 27 27 H 1.09003 * 109.47000 * 119.99653 * 2 1 3 28 28 H 0.96995 * 120.00112 * 5.27883 * 8 7 5 29 29 H 0.97003 * 120.00342 * 94.99736 * 13 3 2 30 30 H 1.07997 * 120.38161 * 180.26305 * 16 15 14 31 31 H 1.07999 * 120.78440 * 179.77374 * 17 16 15 32 32 H 0.97009 * 120.00006 * 0.02562 * 20 19 18 33 33 H 0.96998 * 119.99903 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 -0.8341 5 6 3.5403 1.4448 -0.1421 6 1 4.1136 0.5839 0.1689 7 6 4.1812 2.5460 -0.6689 8 7 3.4785 3.5567 -1.1320 9 14 6.0476 2.6025 -0.7250 10 1 6.5527 1.4690 -1.5407 11 1 6.4859 3.8840 -1.3339 12 1 6.5876 2.4990 0.6544 13 7 1.6678 2.0921 1.2592 14 6 0.4189 2.6739 1.3951 15 7 -0.4247 2.6379 0.3729 16 6 -1.6270 3.1776 0.4648 17 6 -2.0028 3.7990 1.6479 18 6 -1.0911 3.8246 2.7029 19 6 -1.4451 4.4763 3.9891 20 7 -0.5563 4.4948 5.0022 21 8 -2.5356 4.9929 4.1284 22 7 0.1005 3.2553 2.5396 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.5136 3.5619 -1.0337 29 1 2.2962 2.1146 1.9977 30 1 -2.3084 3.1393 -0.3723 31 1 -2.9783 4.2514 1.7491 32 1 0.3147 4.0826 4.8908 33 1 -0.7874 4.9209 5.8423 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:44 Heat of formation + Delta-G solvation = 9.103122 kcal Electronic energy + Delta-G solvation = -18232.917283 eV Core-core repulsion = 15293.635760 eV Total energy + Delta-G solvation = -2939.281523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68573 -38.99521 -36.40673 -33.99049 -32.96059 -32.78548 -31.81693 -29.66783 -26.50739 -25.36446 -23.24509 -22.84616 -21.13327 -19.96872 -18.13381 -17.91454 -16.99430 -16.39845 -15.62213 -15.24232 -15.02735 -14.46967 -14.04936 -13.98818 -13.87449 -13.32664 -13.13755 -12.82292 -12.42454 -11.16943 -10.92918 -10.89225 -10.72083 -10.63751 -10.40956 -10.24205 -10.23346 -10.09196 -9.72089 -9.46011 -8.97493 -8.72142 -8.52078 -7.18179 -6.63857 -4.46221 0.99605 1.68401 3.01164 3.27359 3.31960 3.37860 3.51361 3.74213 4.32808 4.43419 4.52411 4.89994 5.13875 5.37144 5.53887 5.72455 5.92905 5.96267 6.02181 6.15048 6.55783 6.63531 6.68978 6.75557 6.86339 6.96467 7.17332 7.23783 7.46252 7.66530 7.96094 8.17669 8.18954 8.42883 8.60291 9.00015 9.34627 10.72776 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.006432 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.411614 B = 4351.882401 C = 4917.424316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.248 3.752 4 H 0.062 0.938 5 C -0.607 4.607 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.884 5.884 9 Si 1.069 2.931 10 H -0.285 1.285 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.660 5.660 14 C 0.562 3.438 15 N -0.538 5.538 16 C 0.189 3.811 17 C -0.264 4.264 18 C 0.164 3.836 19 C 0.582 3.418 20 N -0.834 5.834 21 O -0.538 6.538 22 N -0.569 5.569 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.277 0.723 29 H 0.399 0.601 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.414 0.586 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 -1.238 6.603 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.149 3.851 4 H 0.080 0.920 5 C -0.646 4.646 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.517 5.517 9 Si 0.896 3.104 10 H -0.211 1.211 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.292 5.292 14 C 0.205 3.795 15 N -0.262 5.262 16 C 0.017 3.983 17 C -0.293 4.293 18 C 0.014 3.986 19 C 0.365 3.635 20 N -0.397 5.397 21 O -0.414 6.414 22 N -0.297 5.297 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.236 0.764 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.245 0.755 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.611 -0.603 5.702 7.358 hybrid contribution -1.551 -0.516 1.304 2.091 sum -6.161 -1.119 7.006 9.397 Atomic orbital electron populations 1.21837 0.97231 0.98501 1.01808 1.21832 0.94160 0.99127 1.00551 1.19049 0.95017 0.88602 0.82453 0.92045 1.22142 0.91069 1.04243 1.47118 0.92428 1.26048 1.07325 0.92406 0.91886 1.70762 1.09754 1.32271 1.38867 0.83538 0.73675 0.76440 0.76706 1.21074 1.20642 1.21140 1.46922 1.08521 1.54920 1.18856 1.19877 0.88738 0.87113 0.83739 1.68154 1.04283 1.23028 1.30734 1.22976 0.91650 0.87885 0.95756 1.22265 1.02840 1.08732 0.95476 1.20942 0.89975 0.93838 0.93882 1.18004 0.83814 0.78442 0.83256 1.43655 1.19710 1.60422 1.15944 1.90786 1.22418 1.45962 1.82186 1.67838 1.19169 1.16904 1.25809 0.94015 0.92305 0.95319 0.92097 0.93780 0.91085 0.76435 0.81747 0.83805 0.75531 0.76712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.45 37.16 0.31 -2.20 16 2 C -0.12 -2.40 5.58 -26.73 -0.15 -2.55 16 3 C 0.25 5.75 1.95 -69.09 -0.13 5.62 16 4 H 0.06 1.59 6.03 -51.93 -0.31 1.28 16 5 C -0.61 -15.39 8.50 -34.44 -0.29 -15.68 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 8 N -0.88 -25.05 13.62 55.43 0.76 -24.29 16 9 Si 1.07 23.20 29.91 -169.99 -5.08 18.12 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.66 -14.18 5.16 -56.95 -0.29 -14.47 16 14 C 0.56 11.43 7.01 -322.93 -2.26 9.17 16 15 N -0.54 -10.43 6.36 -13.93 -0.09 -10.51 16 16 C 0.19 3.01 11.30 -17.22 -0.19 2.81 16 17 C -0.26 -4.17 9.71 -38.91 -0.38 -4.55 16 18 C 0.16 2.80 6.79 -82.66 -0.56 2.24 16 19 C 0.58 9.05 8.10 -12.04 -0.10 8.95 16 20 N -0.83 -9.74 8.87 30.67 0.27 -9.47 16 21 O -0.54 -9.48 17.25 5.39 0.09 -9.39 16 22 N -0.57 -10.51 9.72 -10.49 -0.10 -10.61 16 23 H 0.04 0.80 5.58 -51.93 -0.29 0.51 16 24 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.28 8.01 6.66 -40.82 -0.27 7.74 16 29 H 0.40 8.38 8.71 -40.82 -0.36 8.02 16 30 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.14 2.01 7.73 -52.49 -0.41 1.61 16 32 H 0.41 4.61 8.21 -40.82 -0.34 4.28 16 33 H 0.40 3.64 8.93 -40.82 -0.36 3.28 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -29.65 284.92 -7.64 -37.29 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -3.63 Total: 14.45 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.86 Total: 4.59 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: 0.54 Total: -69.36 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.08 Total: 18.12 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.65 -7.64 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.395 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds