Wall clock time and date at job start Mon Mar 30 2020 18:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47270 * 300.00023 * 3 2 1 6 6 H 1.48502 * 109.47460 * 59.99647 * 3 2 1 7 7 C 1.39930 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99943 * 197.89717 * 7 2 1 9 9 C 1.41404 * 120.00254 * 17.88831 * 7 2 1 10 10 C 1.40751 * 120.19389 * 24.49381 * 9 7 2 11 11 C 1.37877 * 119.87127 * 179.97438 * 10 9 7 12 12 F 1.35101 * 119.86477 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.27325 * 359.72526 * 11 10 9 14 14 C 1.39255 * 120.39773 * 0.55319 * 13 11 10 15 15 N 1.39672 * 119.93699 * 179.72054 * 14 13 11 16 16 C 1.48565 * 111.00131 * 239.60100 * 15 14 13 17 17 C 1.54377 * 104.59505 * 200.96184 * 16 15 14 18 18 C 1.54262 * 105.06239 * 23.85134 * 17 16 15 19 19 H 1.08999 * 110.32628 * 241.00051 * 18 17 16 20 20 N 1.46901 * 110.32658 * 118.89401 * 18 17 16 21 21 C 1.48567 * 110.99936 * 124.18364 * 15 14 13 22 22 C 1.38337 * 120.12244 * 359.44767 * 14 13 11 23 23 H 0.97003 * 120.00347 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.06447 * 359.95263 * 10 9 7 25 25 H 1.07997 * 119.80186 * 180.29661 * 13 11 10 26 26 H 1.08998 * 110.40986 * 82.18132 * 16 15 14 27 27 H 1.09000 * 110.40545 * 319.73969 * 16 15 14 28 28 H 1.08994 * 110.32428 * 264.95548 * 17 16 15 29 29 H 1.09001 * 110.32492 * 142.74570 * 17 16 15 30 30 H 1.00905 * 110.99544 * 61.45098 * 20 18 17 31 31 H 1.00894 * 111.00600 * 185.41245 * 20 18 17 32 32 H 1.08997 * 110.41072 * 40.26082 * 21 15 14 33 33 H 1.09000 * 110.41069 * 277.81625 * 21 15 14 34 34 H 1.07998 * 120.13507 * 180.24774 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0487 -1.2346 0.2869 9 6 1.3521 -2.4067 -0.3772 10 6 0.2225 -2.3602 -1.2155 11 6 -0.4115 -3.5294 -1.5791 12 9 -1.4961 -3.4845 -2.3833 13 6 0.0630 -4.7521 -1.1266 14 6 1.1762 -4.8109 -0.2921 15 7 1.6421 -6.0467 0.1625 16 6 1.6194 -6.1111 1.6466 17 6 2.6180 -7.2333 2.0025 18 6 3.5741 -7.3171 0.7948 19 1 3.5196 -8.3046 0.3366 20 7 4.9517 -7.0252 1.2133 21 6 3.0728 -6.2385 -0.1893 22 6 1.8249 -3.6481 0.0829 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1473 -1.4105 -1.5730 25 1 -0.4366 -5.6636 -1.4200 26 1 0.6203 -6.3649 2.0008 27 1 1.9455 -5.1626 2.0732 28 1 2.0929 -8.1791 2.1360 29 1 3.1710 -6.9756 2.9058 30 1 5.2732 -7.6978 1.8933 31 1 5.5715 -6.9904 0.4180 32 1 3.6263 -5.3099 -0.0499 33 1 3.1679 -6.5881 -1.2173 34 1 2.6907 -3.6937 0.7269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164288238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:11 Heat of formation + Delta-G solvation = -21.604931 kcal Electronic energy + Delta-G solvation = -18060.205477 eV Core-core repulsion = 15099.672392 eV Total energy + Delta-G solvation = -2960.533085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.64053 -39.35335 -36.87874 -34.30304 -33.00816 -30.25540 -29.61403 -27.86165 -26.37760 -25.50923 -22.31837 -20.90348 -20.04362 -19.93602 -17.58089 -16.20934 -15.95970 -15.32005 -15.19206 -14.77912 -14.73578 -14.39692 -14.31540 -13.68701 -13.20215 -12.87253 -12.45468 -12.29713 -11.68434 -11.58722 -11.23339 -11.15737 -11.06016 -10.96171 -10.82627 -10.59348 -10.27723 -10.08465 -9.85124 -9.23350 -8.71467 -8.01388 -7.54293 -7.30309 -6.86774 -4.52546 2.61896 2.63826 3.02551 3.07240 3.09678 3.85248 4.27851 4.40844 4.80543 4.85161 4.98150 5.26211 5.44412 5.62963 5.79243 5.84180 6.00318 6.11959 6.15086 6.28014 6.29579 6.40691 6.51593 6.81109 6.90540 6.97358 7.03311 7.13961 7.29485 7.39528 7.64261 7.67989 7.83729 8.05538 8.17873 8.48336 8.73924 8.78868 10.06035 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.006882 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.545506 B = 4067.823175 C = 5071.475323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.134 3.866 10 C -0.198 4.198 11 C 0.107 3.893 12 F -0.166 7.166 13 C -0.247 4.247 14 C 0.117 3.883 15 N -0.473 5.473 16 C 0.040 3.960 17 C -0.118 4.118 18 C 0.084 3.916 19 H 0.042 0.958 20 N -0.843 5.843 21 C 0.041 3.959 22 C -0.253 4.253 23 H 0.283 0.717 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.339 0.661 31 H 0.341 0.659 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -8.230 2.012 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.219 4.219 11 C 0.087 3.913 12 F -0.145 7.145 13 C -0.268 4.268 14 C 0.023 3.977 15 N -0.194 5.194 16 C -0.087 4.087 17 C -0.156 4.156 18 C -0.028 4.028 19 H 0.060 0.940 20 N -0.374 5.374 21 C -0.086 4.086 22 C -0.275 4.275 23 H 0.094 0.906 24 H 0.147 0.853 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.771 -7.795 2.026 9.361 hybrid contribution 0.778 0.492 -0.156 0.934 sum 5.549 -7.303 1.871 9.361 Atomic orbital electron populations 1.69824 1.07709 1.29577 1.33924 1.25970 0.94748 1.01608 0.92014 0.86228 0.81016 0.80641 0.78718 1.18238 1.19525 1.19838 1.19610 0.98289 0.90981 1.39669 0.89955 1.17217 0.89968 0.92071 0.87691 1.21347 1.00910 0.96024 1.03583 1.17534 0.85342 0.94940 0.93471 1.91338 1.53550 1.97551 1.72019 1.19984 1.02438 0.95120 1.09282 1.18163 0.95162 0.87369 0.96958 1.62972 1.16759 1.30215 1.09487 1.23119 0.99313 0.98025 0.88201 1.22374 0.96484 0.99009 0.97750 1.22081 0.88468 0.96763 0.95455 0.93963 1.58794 1.03084 1.57138 1.18363 1.23196 0.88815 0.98445 0.98146 1.21382 1.04887 0.92854 1.08354 0.90567 0.85289 0.87589 0.90506 0.92615 0.91502 0.90662 0.84880 0.84678 0.91609 0.90842 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.96 55.55 0.61 -19.53 16 2 C 0.08 1.87 5.14 -17.35 -0.09 1.78 16 3 Si 0.91 18.28 29.59 -169.99 -5.03 13.25 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 8 H 0.08 2.05 7.91 -52.48 -0.42 1.64 16 9 C 0.13 3.53 5.57 -106.86 -0.60 2.93 16 10 C -0.20 -5.26 8.67 -38.76 -0.34 -5.60 16 11 C 0.11 2.68 7.28 -39.53 -0.29 2.39 16 12 F -0.17 -3.99 17.26 2.25 0.04 -3.96 16 13 C -0.25 -5.82 9.95 -39.02 -0.39 -6.21 16 14 C 0.12 2.63 4.90 -83.87 -0.41 2.22 16 15 N -0.47 -8.97 5.38 -166.77 -0.90 -9.87 16 16 C 0.04 0.68 6.36 -2.18 -0.01 0.67 16 17 C -0.12 -1.57 6.78 -25.35 -0.17 -1.74 16 18 C 0.08 1.10 4.19 -66.33 -0.28 0.82 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 20 N -0.84 -9.51 9.14 -3.49 -0.03 -9.54 16 21 C 0.04 0.68 6.03 -2.18 -0.01 0.67 16 22 C -0.25 -6.09 7.77 -38.66 -0.30 -6.39 16 23 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 24 H 0.13 3.54 6.15 -52.49 -0.32 3.22 16 25 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.03 6.76 -51.93 -0.35 0.68 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 30 H 0.34 3.05 9.06 -39.29 -0.36 2.70 16 31 H 0.34 3.38 9.04 -39.30 -0.36 3.02 16 32 H 0.07 1.20 6.39 -51.93 -0.33 0.87 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 2.32 6.71 -52.49 -0.35 1.96 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -27.46 284.24 -8.40 -35.86 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.15 Total: 10.14 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.23 Total: -20.65 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.32 Total: -38.94 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.46 -8.40 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164288238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.252 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds