Wall clock time and date at job start Mon Mar 30 2020 18:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47270 * 300.00023 * 3 2 1 6 6 H 1.48502 * 109.47460 * 59.99647 * 3 2 1 7 7 C 1.39930 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99943 * 197.89717 * 7 2 1 9 9 C 1.41404 * 120.00254 * 17.88831 * 7 2 1 10 10 C 1.40751 * 120.19389 * 24.49381 * 9 7 2 11 11 C 1.37877 * 119.87127 * 179.97438 * 10 9 7 12 12 F 1.35101 * 119.86477 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.27325 * 359.72526 * 11 10 9 14 14 C 1.39255 * 120.39773 * 0.55319 * 13 11 10 15 15 N 1.39672 * 119.93699 * 179.72054 * 14 13 11 16 16 C 1.48565 * 111.00131 * 239.60100 * 15 14 13 17 17 C 1.54377 * 104.59505 * 200.96184 * 16 15 14 18 18 C 1.54262 * 105.06239 * 23.85134 * 17 16 15 19 19 H 1.08999 * 110.32628 * 241.00051 * 18 17 16 20 20 N 1.46901 * 110.32658 * 118.89401 * 18 17 16 21 21 C 1.48567 * 110.99936 * 124.18364 * 15 14 13 22 22 C 1.38337 * 120.12244 * 359.44767 * 14 13 11 23 23 H 0.97003 * 120.00347 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.06447 * 359.95263 * 10 9 7 25 25 H 1.07997 * 119.80186 * 180.29661 * 13 11 10 26 26 H 1.08998 * 110.40986 * 82.18132 * 16 15 14 27 27 H 1.09000 * 110.40545 * 319.73969 * 16 15 14 28 28 H 1.08994 * 110.32428 * 264.95548 * 17 16 15 29 29 H 1.09001 * 110.32492 * 142.74570 * 17 16 15 30 30 H 1.00905 * 110.99544 * 61.45098 * 20 18 17 31 31 H 1.00894 * 111.00600 * 185.41245 * 20 18 17 32 32 H 1.08997 * 110.41072 * 40.26082 * 21 15 14 33 33 H 1.09000 * 110.41069 * 277.81625 * 21 15 14 34 34 H 1.07998 * 120.13507 * 180.24774 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0487 -1.2346 0.2869 9 6 1.3521 -2.4067 -0.3772 10 6 0.2225 -2.3602 -1.2155 11 6 -0.4115 -3.5294 -1.5791 12 9 -1.4961 -3.4845 -2.3833 13 6 0.0630 -4.7521 -1.1266 14 6 1.1762 -4.8109 -0.2921 15 7 1.6421 -6.0467 0.1625 16 6 1.6194 -6.1111 1.6466 17 6 2.6180 -7.2333 2.0025 18 6 3.5741 -7.3171 0.7948 19 1 3.5196 -8.3046 0.3366 20 7 4.9517 -7.0252 1.2133 21 6 3.0728 -6.2385 -0.1893 22 6 1.8249 -3.6481 0.0829 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1473 -1.4105 -1.5730 25 1 -0.4366 -5.6636 -1.4200 26 1 0.6203 -6.3649 2.0008 27 1 1.9455 -5.1626 2.0732 28 1 2.0929 -8.1791 2.1360 29 1 3.1710 -6.9756 2.9058 30 1 5.2732 -7.6978 1.8933 31 1 5.5715 -6.9904 0.4180 32 1 3.6263 -5.3099 -0.0499 33 1 3.1679 -6.5881 -1.2173 34 1 2.6907 -3.6937 0.7269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164288238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:11 Heat of formation + Delta-G solvation = -39.578843 kcal Electronic energy + Delta-G solvation = -18060.984884 eV Core-core repulsion = 15099.672392 eV Total energy + Delta-G solvation = -2961.312493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.61306 -40.86253 -38.56095 -35.91966 -34.53006 -31.84826 -31.32844 -29.34988 -27.80170 -27.44472 -23.85512 -22.81131 -21.68590 -21.13213 -19.39405 -17.92757 -17.43212 -16.79993 -16.69060 -16.48251 -16.29567 -16.26207 -16.07653 -15.03694 -14.77664 -14.45489 -14.07963 -13.79968 -13.38085 -13.21080 -12.90789 -12.82996 -12.47804 -12.36496 -12.10776 -12.08557 -12.04866 -11.79784 -11.65983 -11.08818 -9.61773 -9.56055 -9.49804 -9.22182 -8.73991 -6.51522 0.69765 0.75980 1.36935 1.45121 1.53326 2.16223 2.53240 2.91792 3.43628 3.65150 3.70963 3.85353 3.93734 4.18686 4.40084 4.50223 4.57901 4.64464 4.69964 4.85085 4.87577 5.00157 5.01631 5.04824 5.11290 5.19209 5.23564 5.67928 5.73967 5.75730 5.88085 6.14485 6.29902 6.33432 6.54294 6.66153 6.78251 6.86562 8.21791 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.006882 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.545506 B = 4067.823175 C = 5071.475323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.487 4.487 8 H 0.084 0.916 9 C 0.111 3.889 10 C -0.225 4.225 11 C 0.101 3.899 12 F -0.163 7.163 13 C -0.253 4.253 14 C 0.131 3.869 15 N -0.477 5.477 16 C 0.035 3.965 17 C -0.108 4.108 18 C 0.095 3.905 19 H 0.062 0.938 20 N -0.850 5.850 21 C 0.038 3.962 22 C -0.258 4.258 23 H 0.292 0.708 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.355 0.645 31 H 0.349 0.651 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -9.231 2.684 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.245 4.245 11 C 0.082 3.918 12 F -0.142 7.142 13 C -0.274 4.274 14 C 0.037 3.963 15 N -0.199 5.199 16 C -0.092 4.092 17 C -0.146 4.146 18 C -0.017 4.017 19 H 0.080 0.920 20 N -0.384 5.384 21 C -0.089 4.089 22 C -0.279 4.279 23 H 0.103 0.897 24 H 0.130 0.870 25 H 0.140 0.860 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.014 -8.828 2.707 11.020 hybrid contribution 0.376 0.723 -0.348 0.886 sum 6.390 -8.105 2.359 10.587 Atomic orbital electron populations 1.69874 1.09307 1.31111 1.34014 1.26881 0.95460 1.04947 0.90805 0.85092 0.79511 0.75650 0.79124 1.17767 1.18800 1.18768 1.19887 0.98605 0.92022 1.41005 0.89790 1.17550 0.90330 0.93315 0.88083 1.21248 1.02173 0.95863 1.05266 1.17670 0.85379 0.95236 0.93538 1.91332 1.53355 1.97579 1.71909 1.20201 1.02823 0.95011 1.09328 1.18322 0.94088 0.88493 0.95410 1.63044 1.18421 1.27534 1.10854 1.23206 1.00752 0.98590 0.86623 1.22359 0.95701 0.98403 0.98133 1.21943 0.89287 0.96103 0.94365 0.92009 1.58706 1.02445 1.57969 1.19240 1.23273 0.87104 0.98876 0.99682 1.21445 1.05133 0.92860 1.08500 0.89674 0.87010 0.85965 0.90194 0.94870 0.89238 0.89631 0.83053 0.83726 0.93713 0.90366 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.85 10.96 21.82 0.24 -42.61 16 2 C 0.04 1.77 5.14 85.25 0.44 2.21 16 3 Si 0.99 37.43 29.59 68.60 2.03 39.46 16 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.11 6.02 5.57 -21.31 -0.12 5.90 16 10 C -0.23 -12.38 8.67 22.80 0.20 -12.18 16 11 C 0.10 5.18 7.28 22.31 0.16 5.35 16 12 F -0.16 -7.95 17.26 44.97 0.78 -7.18 16 13 C -0.25 -11.90 9.95 22.64 0.23 -11.68 16 14 C 0.13 5.90 4.90 38.16 0.19 6.09 16 15 N -0.48 -17.54 5.38 -681.54 -3.67 -21.21 16 16 C 0.03 1.13 6.36 86.45 0.55 1.68 16 17 C -0.11 -2.54 6.78 31.49 0.21 -2.33 16 18 C 0.09 2.21 4.19 45.81 0.19 2.40 16 19 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 20 N -0.85 -16.79 9.14 -164.96 -1.51 -18.30 16 21 C 0.04 1.20 6.03 86.45 0.52 1.72 16 22 C -0.26 -12.67 7.77 22.86 0.18 -12.49 16 23 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 24 H 0.11 6.43 6.15 -2.91 -0.02 6.42 16 25 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.03 1.22 6.76 -2.39 -0.02 1.21 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.88 7.95 -2.39 -0.02 1.86 16 30 H 0.35 5.19 9.06 -89.69 -0.81 4.38 16 31 H 0.35 6.03 9.04 -89.70 -0.81 5.22 16 32 H 0.04 1.61 6.39 -2.39 -0.02 1.60 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.10 4.83 6.71 -2.91 -0.02 4.81 16 Total: -1.00 -59.85 284.24 0.34 -59.51 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.48 Total: 29.38 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 2.96 Total: -39.04 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -4.94 Total: -82.12 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.78 Total: -7.18 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -59.85 0.34 -59.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164288238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.926 kcal (2) G-P(sol) polarization free energy of solvation -59.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds