Wall clock time and date at job start Mon Mar 30 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38285 * 119.94411 * 2 1 4 4 C 1.38122 * 120.05512 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94720 * 359.97438 * 4 3 2 6 6 O 1.35906 * 120.05978 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99463 * 354.58234 * 6 5 4 8 8 C 1.53004 * 109.47272 * 84.88213 * 7 6 5 9 9 C 1.52999 * 109.46622 * 204.88090 * 7 6 5 10 10 C 1.38716 * 119.88652 * 0.02562 * 5 4 3 11 11 C 1.50700 * 120.02826 * 179.97438 * 10 5 4 12 12 O 1.42895 * 109.47032 * 180.02562 * 11 10 5 13 13 C 1.34935 * 116.99851 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.38638 * 119.99832 * 180.02562 * 13 12 11 16 16 N 1.31579 * 120.00038 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47012 * 90.00299 * 17 15 13 19 19 H 1.48508 * 109.47040 * 210.00105 * 17 15 13 20 20 H 1.48502 * 109.47163 * 329.99955 * 17 15 13 21 21 C 1.38161 * 119.94365 * 0.25259 * 10 5 4 22 22 H 1.09003 * 109.47776 * 89.99942 * 1 2 3 23 23 H 1.09003 * 109.47498 * 210.00060 * 1 2 3 24 24 H 1.09002 * 109.47363 * 329.99667 * 1 2 3 25 25 H 1.07993 * 119.97548 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.02561 * 179.97438 * 4 3 2 27 27 H 1.08995 * 109.47333 * 324.87522 * 7 6 5 28 28 H 1.09004 * 109.46944 * 59.99574 * 8 7 6 29 29 H 1.08997 * 109.46759 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47086 * 299.99438 * 8 7 6 31 31 H 1.08999 * 109.47609 * 59.99798 * 9 7 6 32 32 H 1.08999 * 109.47392 * 180.02562 * 9 7 6 33 33 H 1.09011 * 109.47095 * 299.99848 * 9 7 6 34 34 H 1.09007 * 109.47004 * 60.00024 * 11 10 5 35 35 H 1.08994 * 109.47306 * 300.00709 * 11 10 5 36 36 H 0.96995 * 120.00084 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.97349 * 179.74353 * 21 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6324 0.0000 -0.0016 7 6 6.2810 1.2675 -0.1229 8 6 6.3989 1.9144 1.2587 9 6 7.6780 1.0709 -0.7149 10 6 3.5786 -1.2006 -0.0005 11 6 4.3302 -2.5068 -0.0011 12 8 3.4001 -3.5916 -0.0016 13 6 3.9140 -4.8392 -0.0016 14 1 4.9845 -4.9822 -0.0017 15 6 3.0679 -5.9374 -0.0026 16 7 3.5690 -7.1540 -0.0031 17 14 1.2163 -5.6899 -0.0032 18 1 0.7263 -5.6235 -1.4034 19 1 0.5647 -6.8266 0.6959 20 1 0.8860 -4.4229 0.6975 21 6 2.1970 -1.1979 -0.0058 22 1 -0.3635 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6559 2.1327 -0.0004 26 1 4.1170 2.1371 -0.0010 27 1 5.6965 1.9136 -0.7779 28 1 6.9835 1.2683 1.9137 29 1 6.8941 2.8810 1.1661 30 1 5.4037 2.0545 1.6804 31 1 7.5941 0.6100 -1.6991 32 1 8.1730 2.0376 -0.8070 33 1 8.2626 0.4248 -0.0598 34 1 4.9572 -2.5656 0.8887 35 1 4.9565 -2.5652 -0.8912 36 1 2.9770 -7.9224 -0.0035 37 1 1.6557 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:56 Heat of formation + Delta-G solvation = -59.983813 kcal Electronic energy + Delta-G solvation = -18272.067009 eV Core-core repulsion = 15401.037244 eV Total energy + Delta-G solvation = -2871.029765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21635 -37.86378 -36.35571 -33.53453 -32.08982 -31.42516 -30.93213 -27.46194 -26.49745 -25.75618 -23.80980 -22.65356 -20.53831 -20.34005 -18.13967 -17.39991 -15.99343 -15.45980 -15.42040 -14.63358 -14.45924 -14.11860 -13.90212 -13.64042 -13.39156 -13.06933 -13.02580 -12.69116 -12.44297 -12.25396 -11.90468 -11.77310 -11.67308 -11.52652 -11.07848 -10.92974 -10.84937 -10.52448 -10.37865 -9.93303 -9.78538 -9.23880 -8.45837 -8.12588 -7.65996 -5.95306 -3.62522 1.64841 1.68997 3.32090 3.44098 3.46803 3.61198 4.01224 4.59140 4.66520 4.79465 4.86256 4.94516 5.04924 5.21109 5.32994 5.38173 5.38798 5.47386 5.51647 5.59269 5.64292 5.77791 5.80399 5.97960 5.99801 6.03845 6.06191 6.17252 6.32438 6.49010 6.51389 6.62473 6.81324 6.96620 7.19849 7.67150 7.98450 8.41125 9.44568 9.99403 11.17703 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.006734 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.557281 B = 4156.766463 C = 5392.156091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 C -0.093 4.093 4 C -0.211 4.211 5 C 0.124 3.876 6 O -0.306 6.306 7 C 0.076 3.924 8 C -0.180 4.180 9 C -0.149 4.149 10 C -0.098 4.098 11 C 0.131 3.869 12 O -0.332 6.332 13 C -0.353 4.353 14 H 0.080 0.920 15 C 0.043 3.957 16 N -0.914 5.914 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.264 1.264 21 C -0.058 4.058 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.269 0.731 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 20.612 -0.076 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.229 4.229 5 C 0.079 3.921 6 O -0.220 6.220 7 C 0.020 3.980 8 C -0.237 4.237 9 C -0.206 4.206 10 C -0.098 4.098 11 C 0.054 3.946 12 O -0.248 6.248 13 C -0.432 4.432 14 H 0.097 0.903 15 C -0.153 4.153 16 N -0.560 5.560 17 Si 0.732 3.268 18 H -0.207 1.207 19 H -0.218 1.218 20 H -0.188 1.188 21 C -0.076 4.076 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.878 20.340 -0.055 20.359 hybrid contribution -0.546 0.222 0.002 0.590 sum 0.332 20.561 -0.054 20.564 Atomic orbital electron populations 1.20693 0.91438 1.02342 1.01916 1.19847 0.96074 0.93008 1.04027 1.20678 0.93196 0.97261 1.00012 1.21061 0.95185 0.96468 1.10214 1.18681 0.82118 0.93309 0.98001 1.86169 1.16300 1.31552 1.87965 1.22377 0.94220 0.84408 0.96982 1.22386 1.03086 1.00971 0.97281 1.21848 0.94313 1.02579 1.01853 1.19393 0.93775 0.92817 1.03852 1.20576 0.90566 0.83869 0.99586 1.85139 1.32355 1.13166 1.94180 1.20365 0.93620 0.79880 1.49291 0.90276 1.24293 0.99205 0.93759 0.98081 1.69683 1.35259 0.97174 1.53890 0.86206 0.84828 0.77621 0.78146 1.20707 1.21758 1.18827 1.20941 0.92828 0.98235 0.95606 0.91654 0.91574 0.92124 0.86437 0.85703 0.91142 0.91365 0.91347 0.91806 0.91566 0.90833 0.91361 0.93616 0.93634 0.92166 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 2 C -0.13 -2.03 5.88 -104.60 -0.62 -2.65 16 3 C -0.09 -1.29 9.69 -39.61 -0.38 -1.68 16 4 C -0.21 -2.99 8.24 -39.43 -0.32 -3.31 16 5 C 0.12 2.11 6.57 -39.22 -0.26 1.85 16 6 O -0.31 -4.88 9.23 -19.44 -0.18 -5.06 16 7 C 0.08 0.87 2.85 -26.73 -0.08 0.80 16 8 C -0.18 -1.76 9.17 37.16 0.34 -1.42 16 9 C -0.15 -1.43 9.56 37.16 0.36 -1.07 16 10 C -0.10 -1.95 5.89 -104.47 -0.62 -2.56 16 11 C 0.13 3.00 5.88 36.01 0.21 3.21 16 12 O -0.33 -9.01 7.09 -16.53 -0.12 -9.13 16 13 C -0.35 -10.68 10.35 30.88 0.32 -10.36 16 14 H 0.08 2.50 8.00 -52.49 -0.42 2.08 16 15 C 0.04 1.31 5.49 -17.51 -0.10 1.22 16 16 N -0.91 -28.82 13.96 55.48 0.77 -28.05 16 17 Si 0.90 23.37 28.62 -169.99 -4.86 18.51 16 18 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.26 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.06 -1.12 9.03 -39.61 -0.36 -1.48 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.13 1.42 5.43 -52.48 -0.28 1.14 16 27 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 6.90 -51.93 -0.36 0.31 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 37 H 0.14 2.98 7.00 -52.49 -0.37 2.61 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -32.88 310.17 -6.39 -39.27 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.54 Total: -1.75 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.14 Total: -18.46 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.77 Total: -28.05 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.30 Total: -14.19 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.86 Total: 18.51 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.88 -6.39 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.714 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds