Wall clock time and date at job start Mon Mar 30 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38285 * 119.94411 * 2 1 4 4 C 1.38122 * 120.05512 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94720 * 359.97438 * 4 3 2 6 6 O 1.35906 * 120.05978 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99463 * 354.58234 * 6 5 4 8 8 C 1.53004 * 109.47272 * 84.88213 * 7 6 5 9 9 C 1.52999 * 109.46622 * 204.88090 * 7 6 5 10 10 C 1.38716 * 119.88652 * 0.02562 * 5 4 3 11 11 C 1.50700 * 120.02826 * 179.97438 * 10 5 4 12 12 O 1.42895 * 109.47032 * 180.02562 * 11 10 5 13 13 C 1.34935 * 116.99851 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.38638 * 119.99832 * 180.02562 * 13 12 11 16 16 N 1.31579 * 120.00038 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47012 * 90.00299 * 17 15 13 19 19 H 1.48508 * 109.47040 * 210.00105 * 17 15 13 20 20 H 1.48502 * 109.47163 * 329.99955 * 17 15 13 21 21 C 1.38161 * 119.94365 * 0.25259 * 10 5 4 22 22 H 1.09003 * 109.47776 * 89.99942 * 1 2 3 23 23 H 1.09003 * 109.47498 * 210.00060 * 1 2 3 24 24 H 1.09002 * 109.47363 * 329.99667 * 1 2 3 25 25 H 1.07993 * 119.97548 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.02561 * 179.97438 * 4 3 2 27 27 H 1.08995 * 109.47333 * 324.87522 * 7 6 5 28 28 H 1.09004 * 109.46944 * 59.99574 * 8 7 6 29 29 H 1.08997 * 109.46759 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47086 * 299.99438 * 8 7 6 31 31 H 1.08999 * 109.47609 * 59.99798 * 9 7 6 32 32 H 1.08999 * 109.47392 * 180.02562 * 9 7 6 33 33 H 1.09011 * 109.47095 * 299.99848 * 9 7 6 34 34 H 1.09007 * 109.47004 * 60.00024 * 11 10 5 35 35 H 1.08994 * 109.47306 * 300.00709 * 11 10 5 36 36 H 0.96995 * 120.00084 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.97349 * 179.74353 * 21 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6324 0.0000 -0.0016 7 6 6.2810 1.2675 -0.1229 8 6 6.3989 1.9144 1.2587 9 6 7.6780 1.0709 -0.7149 10 6 3.5786 -1.2006 -0.0005 11 6 4.3302 -2.5068 -0.0011 12 8 3.4001 -3.5916 -0.0016 13 6 3.9140 -4.8392 -0.0016 14 1 4.9845 -4.9822 -0.0017 15 6 3.0679 -5.9374 -0.0026 16 7 3.5690 -7.1540 -0.0031 17 14 1.2163 -5.6899 -0.0032 18 1 0.7263 -5.6235 -1.4034 19 1 0.5647 -6.8266 0.6959 20 1 0.8860 -4.4229 0.6975 21 6 2.1970 -1.1979 -0.0058 22 1 -0.3635 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6559 2.1327 -0.0004 26 1 4.1170 2.1371 -0.0010 27 1 5.6965 1.9136 -0.7779 28 1 6.9835 1.2683 1.9137 29 1 6.8941 2.8810 1.1661 30 1 5.4037 2.0545 1.6804 31 1 7.5941 0.6100 -1.6991 32 1 8.1730 2.0376 -0.8070 33 1 8.2626 0.4248 -0.0598 34 1 4.9572 -2.5656 0.8887 35 1 4.9565 -2.5652 -0.8912 36 1 2.9770 -7.9224 -0.0035 37 1 1.6557 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:56 Heat of formation + Delta-G solvation = -80.094377 kcal Electronic energy + Delta-G solvation = -18272.939068 eV Core-core repulsion = 15401.037244 eV Total energy + Delta-G solvation = -2871.901824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41790 -39.15447 -38.28587 -34.65868 -34.14408 -32.69936 -32.32530 -28.24752 -28.05515 -27.17386 -25.75695 -23.85927 -21.83762 -21.50920 -19.90599 -18.99640 -17.75637 -16.86981 -16.61186 -16.23455 -15.96064 -15.50313 -15.34159 -15.15057 -14.71081 -14.51102 -14.09736 -14.02969 -13.54618 -13.43367 -13.25777 -13.09685 -12.94965 -12.76821 -12.51399 -12.33024 -12.12351 -11.97293 -11.75827 -11.53756 -11.50410 -11.43539 -10.48526 -9.74939 -8.91202 -8.31458 -6.03352 0.36306 0.45240 1.34351 1.39242 1.57004 2.27534 2.40807 2.74647 3.01164 3.21781 3.81368 3.87872 3.99136 4.01667 4.06474 4.18975 4.31378 4.46272 4.56133 4.57961 4.60744 4.69631 4.78360 4.83144 4.87209 4.87669 4.93325 5.12368 5.18597 5.22597 5.27261 5.37917 5.44180 5.54992 5.73828 5.94068 6.10364 6.53822 7.06547 7.72550 8.84500 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.006734 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.557281 B = 4156.766463 C = 5392.156091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.077 4.077 4 C -0.199 4.199 5 C 0.121 3.879 6 O -0.333 6.333 7 C 0.064 3.936 8 C -0.176 4.176 9 C -0.148 4.148 10 C -0.136 4.136 11 C 0.134 3.866 12 O -0.338 6.338 13 C -0.366 4.366 14 H 0.046 0.954 15 C -0.011 4.011 16 N -0.951 5.951 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.083 4.083 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.276 0.724 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 24.334 -0.147 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.095 4.095 4 C -0.217 4.217 5 C 0.076 3.924 6 O -0.248 6.248 7 C 0.009 3.991 8 C -0.233 4.233 9 C -0.205 4.205 10 C -0.136 4.136 11 C 0.058 3.942 12 O -0.254 6.254 13 C -0.444 4.444 14 H 0.064 0.936 15 C -0.204 4.204 16 N -0.598 5.598 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.183 1.183 21 C -0.101 4.101 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.181 0.819 26 H 0.179 0.821 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.803 24.074 -0.127 24.088 hybrid contribution 0.131 -0.832 0.017 0.843 sum -0.672 23.242 -0.111 23.252 Atomic orbital electron populations 1.20759 0.89212 1.03345 1.02972 1.20160 0.97737 0.92276 1.03024 1.21189 0.93145 0.98158 0.97020 1.21458 0.95640 0.96501 1.08132 1.18725 0.82787 0.93212 0.97708 1.86157 1.16048 1.34721 1.87871 1.22800 0.94727 0.83033 0.98514 1.22370 1.03031 1.02066 0.95804 1.21901 0.93582 1.04149 1.00844 1.19222 0.94390 0.92044 1.07980 1.20595 0.90576 0.84618 0.98432 1.85106 1.33420 1.12667 1.94203 1.20356 0.92416 0.81757 1.49885 0.93607 1.25215 1.04610 0.93234 0.97341 1.69792 1.37417 0.98156 1.54442 0.85157 0.78150 0.78086 0.78869 1.19478 1.20087 1.18295 1.20820 0.92562 0.98766 0.97933 0.90484 0.92668 0.89061 0.81949 0.82141 0.89414 0.92634 0.88176 0.92180 0.92553 0.87505 0.92432 0.94932 0.94789 0.91491 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 10.01 71.23 0.71 -1.67 16 2 C -0.13 -3.84 5.88 -19.85 -0.12 -3.96 16 3 C -0.08 -1.81 9.69 22.25 0.22 -1.60 16 4 C -0.20 -4.97 8.24 22.36 0.18 -4.78 16 5 C 0.12 4.04 6.57 22.51 0.15 4.19 16 6 O -0.33 -10.65 9.23 -92.49 -0.85 -11.51 16 7 C 0.06 1.34 2.85 30.60 0.09 1.43 16 8 C -0.18 -2.97 9.17 71.98 0.66 -2.31 16 9 C -0.15 -2.62 9.56 71.98 0.69 -1.93 16 10 C -0.14 -5.58 5.89 -19.77 -0.12 -5.70 16 11 C 0.13 6.60 5.88 71.24 0.42 7.02 16 12 O -0.34 -19.30 7.09 -82.05 -0.58 -19.88 16 13 C -0.37 -23.33 10.35 67.92 0.70 -22.62 16 14 H 0.05 3.13 8.00 -2.91 -0.02 3.10 16 15 C -0.01 -0.67 5.49 84.83 0.47 -0.20 16 16 N -0.95 -61.61 13.96 21.61 0.30 -61.31 16 17 Si 0.97 49.02 28.62 68.60 1.96 50.99 16 18 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 21 C -0.08 -3.22 9.03 22.25 0.20 -3.02 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 24 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 25 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 26 H 0.16 2.82 5.43 -2.91 -0.02 2.81 16 27 H 0.09 1.51 6.32 -2.39 -0.02 1.49 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.06 6.90 -2.39 -0.02 1.05 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.03 1.63 8.14 -2.38 -0.02 1.62 16 35 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.28 16.48 8.31 -92.71 -0.77 15.71 16 37 H 0.11 4.88 7.00 -2.91 -0.02 4.86 16 Total: -1.00 -75.18 310.17 6.12 -69.06 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.04 Total: 7.80 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.25 Total: -35.14 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.30 Total: -61.31 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.44 Total: -31.39 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.96 Total: 50.99 kcal Total: -75.18 6.12 -69.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.035 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds