Wall clock time and date at job start Mon Mar 30 2020 18:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 11 11 C 1.55124 * 104.71992 * 155.82203 * 10 9 7 12 12 C 1.55150 * 101.48860 * 37.29733 * 11 10 9 13 13 H 1.08996 * 110.72311 * 82.69150 * 12 11 10 14 14 O 1.42901 * 110.87514 * 205.89995 * 12 11 10 15 15 C 1.42900 * 113.99756 * 205.06390 * 14 12 11 16 16 C 1.53003 * 109.46975 * 179.97438 * 15 14 12 17 17 N 1.46505 * 109.47242 * 180.02562 * 16 15 14 18 18 C 1.36340 * 125.62981 * 269.69326 * 17 16 15 19 19 C 1.34857 * 108.21301 * 179.82833 * 18 17 16 20 20 C 1.40889 * 107.41806 * 0.42479 * 19 18 17 21 21 C 1.34854 * 107.41578 * 359.73296 * 20 19 18 22 22 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 23 23 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 24 24 H 1.08991 * 110.36854 * 274.75573 * 10 9 7 25 25 H 1.08999 * 110.36513 * 37.07596 * 10 9 7 26 26 H 1.09006 * 111.19065 * 279.19363 * 11 10 9 27 27 H 1.09003 * 110.93951 * 155.29378 * 11 10 9 28 28 H 1.09000 * 109.47423 * 299.99733 * 15 14 12 29 29 H 1.08997 * 109.47397 * 59.99674 * 15 14 12 30 30 H 1.09000 * 109.46848 * 300.00110 * 16 15 14 31 31 H 1.08997 * 109.47303 * 59.99642 * 16 15 14 32 32 H 1.07995 * 125.89608 * 359.95721 * 18 17 16 33 33 H 1.08003 * 126.29173 * 180.16143 * 19 18 17 34 34 H 1.08006 * 126.29343 * 179.73421 * 20 19 18 35 35 H 1.08003 * 125.88984 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.87991 * 300.44004 * 22 9 7 37 37 H 1.09003 * 109.88107 * 61.44368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 -0.0676 -2.5105 -0.6104 11 6 -0.1555 -3.9170 -1.2586 12 6 0.7879 -4.7394 -0.3417 13 1 0.2644 -5.0655 0.5570 14 8 1.3304 -5.8600 -1.0432 15 6 1.7210 -6.9424 -0.1960 16 6 2.2837 -8.0807 -1.0496 17 7 2.6836 -9.1907 -0.1811 18 6 3.9174 -9.3603 0.3738 19 6 3.8971 -10.4907 1.1090 20 6 2.6064 -11.0441 0.9962 21 6 1.8853 -10.2277 0.2011 22 6 1.8975 -3.7263 0.0102 23 1 -0.4849 0.8401 -0.0004 24 1 -0.7316 -2.4452 0.2515 25 1 -0.3159 -1.7404 -1.3407 26 1 0.2125 -3.9017 -2.2846 27 1 -1.1744 -4.3022 -1.2170 28 1 2.4845 -6.5999 0.5025 29 1 0.8542 -7.2999 0.3599 30 1 1.5198 -8.4231 -1.7477 31 1 3.1504 -7.7236 -1.6058 32 1 4.7642 -8.7019 0.2481 33 1 4.7204 -10.8991 1.6763 34 1 2.2584 -11.9548 1.4610 35 1 0.8533 -10.3706 -0.0835 36 1 2.7542 -3.8712 -0.6480 37 1 2.2027 -3.8530 1.0489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224888281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:08 Heat of formation + Delta-G solvation = 33.489205 kcal Electronic energy + Delta-G solvation = -17789.606010 eV Core-core repulsion = 14954.922290 eV Total energy + Delta-G solvation = -2834.683719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20230 -38.52404 -36.14535 -33.50276 -32.11882 -29.37321 -28.86933 -28.33891 -26.97943 -24.39532 -23.17838 -20.56706 -20.43752 -20.21307 -19.93980 -17.57764 -16.90642 -16.56012 -15.54008 -15.12585 -14.66297 -14.37244 -13.88108 -13.71013 -13.34971 -13.07634 -12.71335 -12.45948 -12.18521 -12.15601 -11.84633 -11.71849 -11.42332 -11.01914 -10.90249 -10.78774 -10.40546 -10.12181 -9.85198 -9.72668 -9.25821 -8.74182 -8.62362 -8.25922 -6.84581 -5.78044 -3.11592 2.15317 2.70335 2.97013 3.38735 3.43594 3.45317 3.94183 4.47762 4.53630 4.86793 4.98318 5.12624 5.13587 5.27148 5.30385 5.38980 5.46389 5.53526 5.59256 5.62103 5.67166 5.79341 6.18492 6.22243 6.24360 6.44539 6.49564 6.54466 6.64927 6.89520 7.13827 7.26501 7.42292 7.46709 7.53472 7.74226 8.22095 9.15532 9.77007 10.43960 11.35158 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045972 B = 0.003725 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.920169 B = 7514.617596 C = 7911.338547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.173 3.827 11 C -0.138 4.138 12 C 0.079 3.921 13 H 0.065 0.935 14 O -0.377 6.377 15 C 0.049 3.951 16 C 0.107 3.893 17 N -0.444 5.444 18 C -0.013 4.013 19 C -0.205 4.205 20 C -0.205 4.205 21 C -0.016 4.016 22 C 0.117 3.883 23 H 0.254 0.746 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.033 0.967 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -18.061 -0.886 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.048 3.952 11 C -0.177 4.177 12 C 0.021 3.979 13 H 0.083 0.917 14 O -0.295 6.295 15 C -0.029 4.029 16 C -0.015 4.015 17 N -0.121 5.121 18 C -0.143 4.143 19 C -0.230 4.230 20 C -0.229 4.229 21 C -0.145 4.145 22 C -0.010 4.010 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.051 0.949 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.504 -17.539 -1.294 17.764 hybrid contribution 0.421 0.872 0.444 1.065 sum 2.926 -16.667 -0.850 16.943 Atomic orbital electron populations 1.69939 1.04998 1.25353 1.56329 1.24846 0.95676 0.97884 1.01927 0.86116 0.78610 0.83165 0.77745 1.21433 1.20659 1.21643 1.19027 0.91088 0.82635 1.43161 0.90594 1.44372 1.09525 0.99636 1.79275 1.21474 0.85881 0.90685 0.97113 1.23183 0.97101 0.97893 0.99528 1.23252 0.94726 0.84924 0.94993 0.91728 1.87838 1.82458 1.25627 1.33560 1.22694 0.99164 0.87803 0.93260 1.21624 1.02502 0.85417 0.91934 1.44050 1.10372 1.18994 1.38705 1.21913 0.88762 1.01292 1.02307 1.20904 0.98388 0.97974 1.05699 1.20898 0.94948 1.01970 1.05107 1.21873 0.97474 0.90918 1.04278 1.21713 0.95086 0.86675 0.97501 0.93592 0.95268 0.90770 0.91049 0.91761 0.92683 0.92990 0.88479 0.88332 0.82172 0.84843 0.84872 0.82276 0.94940 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.68 55.49 0.59 -26.40 16 2 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 22.11 29.56 -169.99 -5.03 17.09 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.54 10.24 -15.06 -0.15 -6.70 16 8 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 9 N -0.60 -15.73 3.39 -169.94 -0.58 -16.30 16 10 C 0.17 4.21 5.43 -2.41 -0.01 4.20 16 11 C -0.14 -2.65 6.83 -24.47 -0.17 -2.82 16 12 C 0.08 1.43 3.39 -24.90 -0.08 1.35 16 13 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 14 O -0.38 -6.03 10.08 -35.23 -0.36 -6.38 16 15 C 0.05 0.62 6.13 37.16 0.23 0.85 16 16 C 0.11 1.11 6.46 -4.04 -0.03 1.09 16 17 N -0.44 -4.90 2.75 -117.12 -0.32 -5.22 16 18 C -0.01 -0.14 11.43 -16.75 -0.19 -0.34 16 19 C -0.21 -2.26 10.86 -39.78 -0.43 -2.69 16 20 C -0.20 -2.22 10.86 -39.78 -0.43 -2.65 16 21 C -0.02 -0.17 11.43 -16.75 -0.19 -0.36 16 22 C 0.12 2.53 7.01 -3.07 -0.02 2.51 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 25 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -31.24 309.55 -8.40 -39.65 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.80 Total: -1.25 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.58 Total: -5.84 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.31 Total: -47.93 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.36 Total: -6.38 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.24 -8.40 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224888281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.137 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds