Wall clock time and date at job start Mon Mar 30 2020 18:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 11 11 C 1.55124 * 104.71992 * 155.82203 * 10 9 7 12 12 C 1.55150 * 101.48860 * 37.29733 * 11 10 9 13 13 H 1.08996 * 110.72311 * 82.69150 * 12 11 10 14 14 O 1.42901 * 110.87514 * 205.89995 * 12 11 10 15 15 C 1.42900 * 113.99756 * 205.06390 * 14 12 11 16 16 C 1.53003 * 109.46975 * 179.97438 * 15 14 12 17 17 N 1.46505 * 109.47242 * 180.02562 * 16 15 14 18 18 C 1.36340 * 125.62981 * 269.69326 * 17 16 15 19 19 C 1.34857 * 108.21301 * 179.82833 * 18 17 16 20 20 C 1.40889 * 107.41806 * 0.42479 * 19 18 17 21 21 C 1.34854 * 107.41578 * 359.73296 * 20 19 18 22 22 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 23 23 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 24 24 H 1.08991 * 110.36854 * 274.75573 * 10 9 7 25 25 H 1.08999 * 110.36513 * 37.07596 * 10 9 7 26 26 H 1.09006 * 111.19065 * 279.19363 * 11 10 9 27 27 H 1.09003 * 110.93951 * 155.29378 * 11 10 9 28 28 H 1.09000 * 109.47423 * 299.99733 * 15 14 12 29 29 H 1.08997 * 109.47397 * 59.99674 * 15 14 12 30 30 H 1.09000 * 109.46848 * 300.00110 * 16 15 14 31 31 H 1.08997 * 109.47303 * 59.99642 * 16 15 14 32 32 H 1.07995 * 125.89608 * 359.95721 * 18 17 16 33 33 H 1.08003 * 126.29173 * 180.16143 * 19 18 17 34 34 H 1.08006 * 126.29343 * 179.73421 * 20 19 18 35 35 H 1.08003 * 125.88984 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.87991 * 300.44004 * 22 9 7 37 37 H 1.09003 * 109.88107 * 61.44368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 -0.0676 -2.5105 -0.6104 11 6 -0.1555 -3.9170 -1.2586 12 6 0.7879 -4.7394 -0.3417 13 1 0.2644 -5.0655 0.5570 14 8 1.3304 -5.8600 -1.0432 15 6 1.7210 -6.9424 -0.1960 16 6 2.2837 -8.0807 -1.0496 17 7 2.6836 -9.1907 -0.1811 18 6 3.9174 -9.3603 0.3738 19 6 3.8971 -10.4907 1.1090 20 6 2.6064 -11.0441 0.9962 21 6 1.8853 -10.2277 0.2011 22 6 1.8975 -3.7263 0.0102 23 1 -0.4849 0.8401 -0.0004 24 1 -0.7316 -2.4452 0.2515 25 1 -0.3159 -1.7404 -1.3407 26 1 0.2125 -3.9017 -2.2846 27 1 -1.1744 -4.3022 -1.2170 28 1 2.4845 -6.5999 0.5025 29 1 0.8542 -7.2999 0.3599 30 1 1.5198 -8.4231 -1.7477 31 1 3.1504 -7.7236 -1.6058 32 1 4.7642 -8.7019 0.2481 33 1 4.7204 -10.8991 1.6763 34 1 2.2584 -11.9548 1.4610 35 1 0.8533 -10.3706 -0.0835 36 1 2.7542 -3.8712 -0.6480 37 1 2.2027 -3.8530 1.0489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224888281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:08 Heat of formation + Delta-G solvation = 15.751281 kcal Electronic energy + Delta-G solvation = -17790.375184 eV Core-core repulsion = 14954.922290 eV Total energy + Delta-G solvation = -2835.452893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99342 -39.98191 -37.72677 -34.68166 -33.86754 -31.17355 -29.64680 -29.54096 -28.56677 -26.33071 -24.15446 -22.16187 -21.88810 -21.35091 -20.78364 -19.00140 -18.43529 -17.77421 -16.81036 -16.64142 -16.22930 -15.85464 -15.26354 -14.76140 -14.54846 -14.33685 -14.07353 -13.74187 -13.61251 -13.36387 -13.04369 -12.93259 -12.82304 -12.72441 -12.57774 -12.21147 -12.08390 -12.02842 -11.82204 -11.47423 -10.73964 -10.61084 -9.55932 -9.05688 -8.92352 -7.92364 -5.28713 1.33016 1.45167 1.47778 1.55821 1.83883 2.16529 2.46189 2.80872 3.27783 3.65056 3.69499 3.77793 3.91961 4.05001 4.14290 4.23360 4.25720 4.40356 4.44549 4.59525 4.65319 4.73190 4.78532 4.81395 4.93920 4.97509 5.00734 5.39820 5.41225 5.44188 5.53903 5.65614 6.10558 6.12103 6.18121 6.34296 6.49731 7.03441 7.69844 8.35843 9.19491 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045972 B = 0.003725 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.920169 B = 7514.617596 C = 7911.338547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.177 3.823 11 C -0.123 4.123 12 C 0.096 3.904 13 H 0.080 0.920 14 O -0.378 6.378 15 C 0.048 3.952 16 C 0.114 3.886 17 N -0.449 5.449 18 C -0.028 4.028 19 C -0.220 4.220 20 C -0.221 4.221 21 C -0.023 4.023 22 C 0.113 3.887 23 H 0.251 0.749 24 H 0.006 0.994 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.181 0.819 36 H 0.030 0.970 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -19.277 -1.153 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.052 3.948 11 C -0.161 4.161 12 C 0.038 3.962 13 H 0.098 0.902 14 O -0.296 6.296 15 C -0.030 4.030 16 C -0.008 4.008 17 N -0.127 5.127 18 C -0.158 4.158 19 C -0.245 4.245 20 C -0.246 4.246 21 C -0.152 4.152 22 C -0.013 4.013 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.191 0.809 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.198 0.802 36 H 0.048 0.952 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.818 -18.795 -1.561 19.069 hybrid contribution 0.368 1.170 0.559 1.348 sum 3.187 -17.625 -1.002 17.939 Atomic orbital electron populations 1.70129 1.06360 1.25798 1.57165 1.25701 0.96604 1.01171 1.01936 0.85066 0.77578 0.78692 0.77798 1.20969 1.19482 1.21765 1.19392 0.91544 0.84052 1.43067 0.90510 1.44689 1.10285 1.00746 1.79480 1.21284 0.84835 0.93042 0.95656 1.22993 0.99334 0.94741 0.99072 1.22937 0.93068 0.84926 0.95292 0.90164 1.87818 1.82312 1.25585 1.33912 1.22846 0.99380 0.87389 0.93375 1.21581 1.03130 0.84535 0.91510 1.44143 1.10463 1.19149 1.38917 1.22258 0.89352 1.01720 1.02434 1.21215 0.99044 0.98268 1.05960 1.21221 0.95092 1.02745 1.05499 1.22312 0.98416 0.90602 1.03905 1.21867 0.96264 0.85832 0.97353 0.94011 0.97553 0.94097 0.91003 0.88594 0.93444 0.92100 0.86890 0.87781 0.80876 0.83780 0.83563 0.80151 0.95192 0.96240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 10.68 21.65 0.23 -56.56 16 2 C -0.06 -3.46 5.40 84.86 0.46 -3.00 16 3 Si 0.98 45.77 29.56 68.60 2.03 47.80 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.25 -14.44 10.24 84.03 0.86 -13.58 16 8 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 9 N -0.62 -33.03 3.39 -691.56 -2.35 -35.37 16 10 C 0.18 8.71 5.43 86.93 0.47 9.18 16 11 C -0.12 -4.52 6.83 32.06 0.22 -4.30 16 12 C 0.10 3.30 3.39 31.78 0.11 3.41 16 13 H 0.08 2.54 7.88 -2.39 -0.02 2.52 16 14 O -0.38 -11.11 10.08 -148.98 -1.50 -12.61 16 15 C 0.05 1.09 6.13 71.98 0.44 1.53 16 16 C 0.11 2.07 6.46 86.38 0.56 2.63 16 17 N -0.45 -8.94 2.75 -524.46 -1.44 -10.38 16 18 C -0.03 -0.58 11.43 83.22 0.95 0.37 16 19 C -0.22 -4.55 10.86 22.14 0.24 -4.31 16 20 C -0.22 -4.42 10.86 22.14 0.24 -4.18 16 21 C -0.02 -0.44 11.43 83.22 0.95 0.51 16 22 C 0.11 4.82 7.01 86.73 0.61 5.42 16 23 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 25 H 0.04 2.25 6.95 -2.39 -0.02 2.23 16 26 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 27 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.03 1.29 8.06 -2.39 -0.02 1.27 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.16 309.55 4.10 -63.05 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.02 Total: 10.39 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 6.11 Total: -6.32 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.56 Total: -102.31 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.50 Total: -12.61 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.16 4.10 -63.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224888281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.806 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds