Wall clock time and date at job start Mon Mar 30 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99868 * 2 1 4 4 H 1.09001 * 109.46604 * 30.00144 * 3 2 1 5 5 C 1.52997 * 109.46774 * 270.00123 * 3 2 1 6 6 C 1.53005 * 109.47127 * 149.99915 * 3 2 1 7 7 C 1.53000 * 109.47221 * 295.00076 * 6 3 2 8 8 O 1.42897 * 109.47186 * 179.97438 * 7 6 3 9 9 C 1.35674 * 116.99932 * 179.97438 * 8 7 6 10 10 C 1.39309 * 119.81889 * 359.72761 * 9 8 7 11 11 C 1.36444 * 120.18362 * 179.75851 * 10 9 8 12 12 C 1.40828 * 119.81002 * 0.51642 * 11 10 9 13 13 C 1.41215 * 120.17743 * 179.71661 * 12 11 10 14 14 H 1.08002 * 120.00268 * 204.55598 * 13 12 11 15 15 C 1.39890 * 120.00174 * 24.56449 * 13 12 11 16 16 N 1.30885 * 119.99559 * 17.92745 * 15 13 12 17 17 Si 1.86797 * 120.00269 * 197.93224 * 15 13 12 18 18 H 1.48503 * 109.47131 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47276 * 119.99652 * 17 15 13 20 20 H 1.48493 * 109.47495 * 239.99741 * 17 15 13 21 21 C 1.40838 * 119.64273 * 359.73901 * 12 11 10 22 22 C 1.36433 * 119.81255 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.47244 * 299.99562 * 1 2 3 24 24 H 1.08999 * 109.47695 * 60.00285 * 1 2 3 25 25 H 1.08999 * 109.46685 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47156 * 299.99117 * 5 3 2 27 27 H 1.08992 * 109.47677 * 60.00194 * 5 3 2 28 28 H 1.09009 * 109.46607 * 180.02562 * 5 3 2 29 29 H 1.08993 * 109.47213 * 174.99975 * 6 3 2 30 30 H 1.09005 * 109.46903 * 55.00178 * 6 3 2 31 31 H 1.09003 * 109.47159 * 59.99875 * 7 6 3 32 32 H 1.09003 * 109.46833 * 300.00172 * 7 6 3 33 33 H 1.08006 * 119.90760 * 0.02562 * 10 9 8 34 34 H 1.08003 * 120.09267 * 180.25325 * 11 10 9 35 35 H 0.97006 * 119.99353 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.09273 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.91051 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3448 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3589 1.2634 0.7213 7 6 3.1383 0.9185 2.1955 8 8 4.3979 0.8786 2.8690 9 6 4.3792 0.5848 4.1934 10 6 3.1649 0.3450 4.8327 11 6 3.1378 0.0441 6.1633 12 6 4.3410 -0.0130 6.8928 13 6 4.3215 -0.3178 8.2715 14 1 5.1292 0.0108 8.9088 15 6 3.2560 -1.0455 8.8120 16 7 2.4716 -1.7386 8.0261 17 14 2.9527 -1.0282 10.6550 18 1 3.9720 -0.1745 11.3165 19 1 1.5986 -0.4835 10.9288 20 1 3.0459 -2.4121 11.1852 21 6 5.5639 0.2360 6.2400 22 6 5.5741 0.5298 4.9077 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.8829 1.0776 -1.9563 27 1 1.2568 1.8015 -1.9563 28 1 2.6613 2.7671 -1.4425 29 1 3.8426 2.2371 0.6444 30 1 3.9931 0.5053 0.2617 31 1 2.6545 -0.0552 2.2724 32 1 2.5040 1.6767 2.6550 33 1 2.2427 0.3932 4.2726 34 1 2.1959 -0.1455 6.6565 35 1 1.7326 -2.2429 8.4009 36 1 6.4910 0.1946 6.7925 37 1 6.5108 0.7214 4.4056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:17 Heat of formation + Delta-G solvation = -80.200651 kcal Electronic energy + Delta-G solvation = -17709.600448 eV Core-core repulsion = 14837.694015 eV Total energy + Delta-G solvation = -2871.906432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.96703 -38.25723 -36.34577 -33.58332 -32.98436 -29.76686 -29.52973 -28.55528 -26.74860 -24.83753 -23.40729 -21.44319 -20.73493 -20.14595 -17.31875 -17.04010 -16.83943 -15.48491 -15.23872 -15.11414 -14.97929 -14.33886 -13.90846 -13.35860 -12.90159 -12.76345 -12.72335 -12.40458 -12.27566 -11.88791 -11.79673 -11.56442 -11.18162 -11.08553 -10.96188 -10.83262 -10.70990 -10.45540 -9.83041 -9.73054 -9.69963 -9.32381 -8.96887 -7.60592 -6.96459 -6.69104 -4.21228 2.79712 3.00800 3.10453 3.15880 3.24051 3.66691 3.97758 4.06946 4.65435 4.85241 4.88656 5.14546 5.19572 5.27762 5.34778 5.47902 5.58019 5.59652 5.68146 5.71267 5.83096 5.98279 6.16923 6.18712 6.21725 6.33876 6.79037 6.94245 7.10776 7.11833 7.32411 7.46275 7.60577 7.96350 8.04426 8.20017 8.50179 8.70292 8.94072 9.04065 10.25562 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033423 B = 0.004258 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.541306 B = 6574.895238 C = 7275.925720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.087 3.913 4 H 0.062 0.938 5 C -0.172 4.172 6 C -0.115 4.115 7 C 0.071 3.929 8 O -0.332 6.332 9 C -0.006 4.006 10 C -0.173 4.173 11 C -0.134 4.134 12 C 0.086 3.914 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.196 4.196 22 C -0.115 4.115 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.278 0.722 36 H 0.099 0.901 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 4.762 -12.115 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.029 3.971 4 H 0.080 0.920 5 C -0.229 4.229 6 C -0.152 4.152 7 C -0.006 4.006 8 O -0.248 6.248 9 C -0.049 4.049 10 C -0.192 4.192 11 C -0.153 4.153 12 C 0.084 3.916 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.427 5.427 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.216 4.216 22 C -0.134 4.134 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.416 4.469 -12.215 13.736 hybrid contribution -0.769 0.036 0.858 1.153 sum -5.185 4.506 -11.357 13.272 Atomic orbital electron populations 1.22781 0.81313 1.02789 0.99756 1.87972 1.19455 1.27659 1.95040 1.22082 0.94675 0.84855 0.95458 0.91977 1.22253 1.02250 1.01800 0.96637 1.21618 0.96106 1.03373 0.94127 1.22374 0.86234 1.00782 0.91166 1.85762 1.30153 1.87789 1.21065 1.18581 0.94425 1.10196 0.81726 1.20625 0.94876 1.07088 0.96650 1.20941 0.99069 1.02773 0.92565 1.17596 0.90512 0.90100 0.93400 1.19493 1.05659 1.30637 0.93601 0.90490 1.25873 0.94918 0.93112 1.00282 1.69862 1.14395 1.21123 1.37311 0.86301 0.79150 0.78741 0.82732 1.18458 1.19842 1.20097 1.20591 0.97189 1.10717 0.93067 1.19615 0.94316 1.05325 0.94128 0.93924 0.94337 0.89649 0.91597 0.92519 0.91449 0.89907 0.90216 0.92409 0.93676 0.88807 0.86161 0.91106 0.88244 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -5.03 9.88 -35.23 -0.35 -5.38 16 3 C 0.09 1.00 2.72 -26.73 -0.07 0.93 16 4 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 5 C -0.17 -1.57 9.53 37.16 0.35 -1.22 16 6 C -0.11 -1.55 5.29 -26.73 -0.14 -1.69 16 7 C 0.07 1.22 4.63 37.16 0.17 1.40 16 8 O -0.33 -7.10 10.12 -18.72 -0.19 -7.29 16 9 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 10 C -0.17 -4.24 8.96 -39.83 -0.36 -4.60 16 11 C -0.13 -3.58 8.64 -39.25 -0.34 -3.91 16 12 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 13 C -0.46 -12.53 9.04 -37.83 -0.34 -12.87 16 14 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 15 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 16 N -0.80 -21.09 10.96 55.54 0.61 -20.48 16 17 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.20 -4.95 9.74 -39.25 -0.38 -5.34 16 22 C -0.12 -2.77 9.92 -39.83 -0.40 -3.16 16 23 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 24 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.06 7.34 -51.93 -0.38 0.68 16 32 H 0.05 0.75 7.63 -51.93 -0.40 0.36 16 33 H 0.09 2.07 6.27 -52.48 -0.33 1.74 16 34 H 0.12 3.28 6.16 -52.48 -0.32 2.96 16 35 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 36 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -29.40 310.64 -7.21 -36.61 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.58 Total: 3.87 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -1.36 Total: -25.90 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.61 Total: -20.48 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.54 Total: -12.67 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.40 -7.21 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.586 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds