Wall clock time and date at job start Mon Mar 30 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99868 * 2 1 4 4 H 1.09001 * 109.46604 * 30.00144 * 3 2 1 5 5 C 1.52997 * 109.46774 * 270.00123 * 3 2 1 6 6 C 1.53005 * 109.47127 * 149.99915 * 3 2 1 7 7 C 1.53000 * 109.47221 * 295.00076 * 6 3 2 8 8 O 1.42897 * 109.47186 * 179.97438 * 7 6 3 9 9 C 1.35674 * 116.99932 * 179.97438 * 8 7 6 10 10 C 1.39309 * 119.81889 * 359.72761 * 9 8 7 11 11 C 1.36444 * 120.18362 * 179.75851 * 10 9 8 12 12 C 1.40828 * 119.81002 * 0.51642 * 11 10 9 13 13 C 1.41215 * 120.17743 * 179.71661 * 12 11 10 14 14 H 1.08002 * 120.00268 * 204.55598 * 13 12 11 15 15 C 1.39890 * 120.00174 * 24.56449 * 13 12 11 16 16 N 1.30885 * 119.99559 * 17.92745 * 15 13 12 17 17 Si 1.86797 * 120.00269 * 197.93224 * 15 13 12 18 18 H 1.48503 * 109.47131 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47276 * 119.99652 * 17 15 13 20 20 H 1.48493 * 109.47495 * 239.99741 * 17 15 13 21 21 C 1.40838 * 119.64273 * 359.73901 * 12 11 10 22 22 C 1.36433 * 119.81255 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.47244 * 299.99562 * 1 2 3 24 24 H 1.08999 * 109.47695 * 60.00285 * 1 2 3 25 25 H 1.08999 * 109.46685 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47156 * 299.99117 * 5 3 2 27 27 H 1.08992 * 109.47677 * 60.00194 * 5 3 2 28 28 H 1.09009 * 109.46607 * 180.02562 * 5 3 2 29 29 H 1.08993 * 109.47213 * 174.99975 * 6 3 2 30 30 H 1.09005 * 109.46903 * 55.00178 * 6 3 2 31 31 H 1.09003 * 109.47159 * 59.99875 * 7 6 3 32 32 H 1.09003 * 109.46833 * 300.00172 * 7 6 3 33 33 H 1.08006 * 119.90760 * 0.02562 * 10 9 8 34 34 H 1.08003 * 120.09267 * 180.25325 * 11 10 9 35 35 H 0.97006 * 119.99353 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.09273 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.91051 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3448 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3589 1.2634 0.7213 7 6 3.1383 0.9185 2.1955 8 8 4.3979 0.8786 2.8690 9 6 4.3792 0.5848 4.1934 10 6 3.1649 0.3450 4.8327 11 6 3.1378 0.0441 6.1633 12 6 4.3410 -0.0130 6.8928 13 6 4.3215 -0.3178 8.2715 14 1 5.1292 0.0108 8.9088 15 6 3.2560 -1.0455 8.8120 16 7 2.4716 -1.7386 8.0261 17 14 2.9527 -1.0282 10.6550 18 1 3.9720 -0.1745 11.3165 19 1 1.5986 -0.4835 10.9288 20 1 3.0459 -2.4121 11.1852 21 6 5.5639 0.2360 6.2400 22 6 5.5741 0.5298 4.9077 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.8829 1.0776 -1.9563 27 1 1.2568 1.8015 -1.9563 28 1 2.6613 2.7671 -1.4425 29 1 3.8426 2.2371 0.6444 30 1 3.9931 0.5053 0.2617 31 1 2.6545 -0.0552 2.2724 32 1 2.5040 1.6767 2.6550 33 1 2.2427 0.3932 4.2726 34 1 2.1959 -0.1455 6.6565 35 1 1.7326 -2.2429 8.4009 36 1 6.4910 0.1946 6.7925 37 1 6.5108 0.7214 4.4056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:17 Heat of formation + Delta-G solvation = -96.534453 kcal Electronic energy + Delta-G solvation = -17710.308735 eV Core-core repulsion = 14837.694015 eV Total energy + Delta-G solvation = -2872.614719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58697 -39.38341 -38.12865 -35.32442 -34.21579 -31.56815 -31.25155 -29.98058 -27.56569 -26.70842 -24.76089 -23.03307 -22.21863 -21.77380 -19.27604 -18.64583 -17.91997 -17.16535 -16.57488 -16.37611 -16.09082 -15.82275 -15.70706 -14.77307 -14.42249 -14.17550 -14.01358 -13.85523 -13.55803 -13.40742 -13.11248 -12.96066 -12.74924 -12.52241 -12.38643 -12.25235 -12.11328 -11.69664 -11.61674 -11.44477 -11.21868 -10.86563 -10.58861 -9.57818 -8.92029 -8.60374 -6.23099 0.92659 1.03577 1.39912 1.50737 1.55577 2.23137 2.54359 2.71977 2.86666 3.69524 3.87958 3.97165 4.07253 4.26352 4.29083 4.35246 4.45136 4.46792 4.49384 4.59193 4.79205 4.83152 4.84986 4.96111 4.97537 5.00541 5.14792 5.15509 5.30099 5.36469 5.51844 5.66229 5.97331 6.05872 6.22763 6.28010 6.55772 6.78843 6.94731 7.09396 8.36815 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033423 B = 0.004258 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.541306 B = 6574.895238 C = 7275.925720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.086 3.914 4 H 0.072 0.928 5 C -0.166 4.166 6 C -0.108 4.108 7 C 0.065 3.935 8 O -0.336 6.336 9 C -0.004 4.004 10 C -0.177 4.177 11 C -0.156 4.156 12 C 0.055 3.945 13 C -0.499 4.499 14 H 0.077 0.923 15 C 0.033 3.967 16 N -0.833 5.833 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.204 4.204 22 C -0.121 4.121 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.112 0.888 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 5.495 -12.724 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.028 3.972 4 H 0.090 0.910 5 C -0.223 4.223 6 C -0.145 4.145 7 C -0.010 4.010 8 O -0.252 6.252 9 C -0.048 4.048 10 C -0.195 4.195 11 C -0.175 4.175 12 C 0.052 3.948 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.460 5.460 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.192 1.192 21 C -0.224 4.224 22 C -0.140 4.140 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.776 5.208 -12.854 14.669 hybrid contribution -0.663 -0.189 0.906 1.139 sum -5.439 5.019 -11.948 14.055 Atomic orbital electron populations 1.22938 0.79893 1.03552 1.00769 1.87929 1.21155 1.28758 1.95285 1.22168 0.93540 0.84629 0.96855 0.90969 1.22206 1.03002 1.02362 0.94774 1.21647 0.97669 1.03945 0.91248 1.22653 0.84786 1.00341 0.93236 1.85769 1.32520 1.87311 1.19627 1.18742 0.94191 1.08876 0.82960 1.20799 0.96134 1.06535 0.96068 1.20908 0.98514 1.04548 0.93574 1.17964 0.91438 0.91145 0.94206 1.19757 1.07026 1.32153 0.93949 0.90466 1.26756 0.94031 0.91975 1.05291 1.69913 1.14920 1.21507 1.39615 0.85143 0.79180 0.79042 0.76217 1.18094 1.18959 1.19159 1.20816 0.97159 1.10560 0.93848 1.19920 0.95573 1.04600 0.93870 0.93879 0.92299 0.89165 0.92098 0.91298 0.89885 0.88202 0.90919 0.93834 0.92958 0.86996 0.87570 0.90267 0.86989 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.68 16 2 O -0.41 -10.30 9.88 -148.98 -1.47 -11.78 16 3 C 0.09 1.79 2.72 30.59 0.08 1.88 16 4 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 5 C -0.17 -2.59 9.53 71.98 0.69 -1.90 16 6 C -0.11 -2.72 5.29 30.60 0.16 -2.56 16 7 C 0.07 2.20 4.63 71.98 0.33 2.53 16 8 O -0.34 -14.04 10.12 -89.91 -0.91 -14.95 16 9 C 0.00 -0.18 6.71 22.79 0.15 -0.03 16 10 C -0.18 -8.70 8.96 22.11 0.20 -8.50 16 11 C -0.16 -8.53 8.64 22.48 0.19 -8.33 16 12 C 0.05 3.05 5.57 -21.28 -0.12 2.93 16 13 C -0.50 -27.50 9.04 23.40 0.21 -27.29 16 14 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 15 C 0.03 1.70 5.13 85.23 0.44 2.14 16 16 N -0.83 -44.58 10.96 21.82 0.24 -44.34 16 17 Si 0.98 38.78 29.60 68.60 2.03 40.81 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 21 C -0.20 -10.40 9.74 22.48 0.22 -10.18 16 22 C -0.12 -5.75 9.92 22.11 0.22 -5.53 16 23 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 24 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 1.59 7.34 -2.39 -0.02 1.57 16 32 H 0.05 1.68 7.63 -2.39 -0.02 1.67 16 33 H 0.11 4.95 6.27 -2.91 -0.02 4.93 16 34 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 35 H 0.29 13.82 8.30 -92.70 -0.77 13.05 16 36 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 37 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.29 310.64 4.93 -58.36 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 1.04 Total: 25.06 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 4.00 Total: -53.17 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.24 Total: -44.34 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -2.38 Total: -26.73 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -63.29 4.93 -58.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.173 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds