Wall clock time and date at job start Mon Mar 30 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47393 * 2 1 4 4 C 1.42896 * 114.00465 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47272 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47075 * 184.99654 * 5 4 3 7 7 C 1.53003 * 109.47326 * 305.00237 * 5 4 3 8 8 O 1.42905 * 109.47063 * 65.00258 * 5 4 3 9 9 C 1.35670 * 116.99710 * 156.22135 * 8 5 4 10 10 C 1.39311 * 119.82196 * 5.24063 * 9 8 5 11 11 C 1.36444 * 120.18640 * 179.97438 * 10 9 8 12 12 C 1.40832 * 119.81105 * 0.02562 * 11 10 9 13 13 C 1.41208 * 120.18113 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99545 * 333.82794 * 13 12 11 15 15 C 1.39893 * 120.00306 * 153.82924 * 13 12 11 16 16 N 1.30875 * 119.99934 * 346.87244 * 15 13 12 17 17 Si 1.86803 * 119.99957 * 166.87192 * 15 13 12 18 18 H 1.48501 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46856 * 119.99871 * 17 15 13 20 20 H 1.48497 * 109.47136 * 240.00168 * 17 15 13 21 21 C 1.40834 * 119.64085 * 0.24301 * 12 11 10 22 22 C 1.36435 * 119.81489 * 359.47581 * 21 12 11 23 23 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47375 * 299.99956 * 1 2 3 25 25 H 1.08999 * 109.47095 * 60.00113 * 1 2 3 26 26 H 1.09002 * 109.47375 * 240.00043 * 2 1 3 27 27 H 1.08999 * 109.47095 * 119.99887 * 2 1 3 28 28 H 1.09003 * 109.46993 * 60.00122 * 4 3 2 29 29 H 1.08997 * 109.47086 * 300.00115 * 4 3 2 30 30 H 1.09001 * 109.46507 * 299.99731 * 7 5 4 31 31 H 1.08994 * 109.46949 * 59.99860 * 7 5 4 32 32 H 1.09002 * 109.47116 * 179.97438 * 7 5 4 33 33 H 1.07994 * 119.90630 * 0.02562 * 10 9 8 34 34 H 1.07994 * 120.09248 * 179.97438 * 11 10 9 35 35 H 0.97005 * 120.00019 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.09180 * 179.72672 * 21 12 11 37 37 H 1.07998 * 119.91553 * 180.27044 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9383 -0.0001 6 1 4.9082 3.0253 -0.0892 7 6 3.1579 3.6438 -1.1824 8 8 3.3975 3.5461 1.2204 9 6 4.0595 4.6616 1.6181 10 6 5.0295 5.2234 0.7910 11 6 5.6994 6.3454 1.1833 12 6 5.4082 6.9353 2.4285 13 6 6.0971 8.0963 2.8426 14 1 7.0879 8.3001 2.4641 15 6 5.4963 8.9825 3.7430 16 7 4.2176 8.8836 4.0038 17 14 6.5192 10.3071 4.5730 18 1 7.9270 10.2074 4.1111 19 1 5.9769 11.6441 4.2216 20 1 6.4667 10.1229 6.0455 21 6 4.4301 6.3578 3.2611 22 6 3.7653 5.2390 2.8515 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9765 -0.8892 29 1 3.8332 0.9767 0.8908 30 1 3.4844 3.1802 -2.1134 31 1 2.0751 3.5567 -1.0933 32 1 3.4386 4.6970 -1.1826 33 1 5.2513 4.7700 -0.1637 34 1 6.4514 6.7794 0.5411 35 1 3.8011 9.4979 4.6285 36 1 4.2041 6.8016 4.2195 37 1 3.0118 4.7973 3.4867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:23 Heat of formation + Delta-G solvation = -91.193503 kcal Electronic energy + Delta-G solvation = -17888.200162 eV Core-core repulsion = 15015.817044 eV Total energy + Delta-G solvation = -2872.383118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78272 -39.08478 -38.00094 -35.24053 -33.62152 -31.81877 -31.13036 -30.86152 -27.49666 -26.62265 -23.77502 -23.60409 -22.60298 -21.49083 -19.27327 -18.84230 -17.43149 -17.05995 -17.01769 -16.49153 -15.83840 -15.68714 -15.27977 -14.82207 -14.48497 -14.13038 -13.92470 -13.79938 -13.41340 -13.21918 -13.17879 -12.86521 -12.76707 -12.57230 -12.36665 -12.18885 -12.08655 -11.82881 -11.61342 -11.47611 -11.12311 -10.87071 -10.51260 -9.53835 -8.85313 -8.54592 -6.22631 0.96260 1.04553 1.40506 1.51979 1.55603 2.24411 2.63094 2.74882 2.78056 3.71450 3.86830 4.05623 4.17172 4.19807 4.34398 4.35794 4.40009 4.46159 4.52621 4.60903 4.72751 4.86970 4.92950 4.96331 5.05624 5.10098 5.24594 5.27885 5.30364 5.36969 5.62834 5.67986 5.91205 6.08099 6.28218 6.32384 6.60473 6.85250 6.97725 7.13751 8.41603 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.052194 B = 0.004061 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.336290 B = 6893.705028 C = 7196.521544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.072 3.928 5 C 0.077 3.923 6 H 0.088 0.912 7 C -0.166 4.166 8 O -0.329 6.329 9 C 0.008 3.992 10 C -0.167 4.167 11 C -0.204 4.204 12 C 0.052 3.948 13 C -0.498 4.498 14 H 0.076 0.924 15 C 0.029 3.971 16 N -0.839 5.839 17 Si 0.985 3.015 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.266 1.266 21 C -0.148 4.148 22 C -0.140 4.140 23 H 0.093 0.907 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.285 0.715 36 H 0.112 0.888 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 -13.323 -7.314 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.325 6.325 4 C -0.004 4.004 5 C 0.021 3.979 6 H 0.105 0.895 7 C -0.223 4.223 8 O -0.245 6.245 9 C -0.036 4.036 10 C -0.186 4.186 11 C -0.223 4.223 12 C 0.050 3.950 13 C -0.528 4.528 14 H 0.094 0.906 15 C -0.183 4.183 16 N -0.466 5.466 17 Si 0.806 3.194 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.190 1.190 21 C -0.167 4.167 22 C -0.158 4.158 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.502 -13.158 -7.102 15.160 hybrid contribution 0.451 0.673 0.414 0.910 sum -2.051 -12.485 -6.688 14.311 Atomic orbital electron populations 1.21758 0.93330 1.03275 1.02337 1.22668 0.96187 0.83005 1.00940 1.87968 1.21133 1.27848 1.95557 1.22627 0.81968 0.93689 1.02112 1.22602 0.99142 0.92296 0.83906 0.89475 1.22186 1.01805 1.00413 0.97943 1.85976 1.58118 1.39330 1.41049 1.18730 0.98074 0.90945 0.95874 1.20731 0.99235 0.98667 0.99938 1.20852 1.04894 0.99745 0.96838 1.17953 0.92853 0.93082 0.91125 1.19739 1.02865 1.05579 1.24648 0.90632 1.26751 0.95724 1.00559 0.95306 1.69886 1.11791 1.35764 1.29191 0.85114 0.79105 0.76907 0.78259 1.18130 1.19291 1.19049 1.20960 1.00236 0.95172 1.00364 1.20030 1.02389 0.98026 0.95401 0.88822 0.93275 0.92261 0.91590 0.93134 0.88491 0.92668 0.88918 0.92404 0.93462 0.85131 0.87540 0.90410 0.87061 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.05 0.93 6.66 71.98 0.48 1.41 16 3 O -0.40 -11.19 9.43 -144.34 -1.36 -12.55 16 4 C 0.07 1.78 5.81 71.98 0.42 2.20 16 5 C 0.08 2.37 2.64 30.59 0.08 2.45 16 6 H 0.09 2.50 6.36 -2.39 -0.02 2.49 16 7 C -0.17 -4.78 8.94 71.98 0.64 -4.14 16 8 O -0.33 -13.71 9.76 -85.23 -0.83 -14.54 16 9 C 0.01 0.36 6.61 22.79 0.15 0.51 16 10 C -0.17 -7.47 8.11 22.11 0.18 -7.29 16 11 C -0.20 -10.14 9.74 22.49 0.22 -9.92 16 12 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 13 C -0.50 -27.47 9.05 23.40 0.21 -27.26 16 14 H 0.08 3.99 7.88 -2.91 -0.02 3.97 16 15 C 0.03 1.51 5.22 85.24 0.45 1.96 16 16 N -0.84 -45.41 10.80 21.82 0.24 -45.17 16 17 Si 0.99 39.25 29.58 68.60 2.03 41.28 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 C -0.15 -8.16 8.62 22.48 0.19 -7.97 16 22 C -0.14 -7.11 9.92 22.11 0.22 -6.89 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.81 7.56 -2.39 -0.02 1.79 16 32 H 0.05 1.51 6.77 -2.39 -0.02 1.50 16 33 H 0.13 4.84 5.35 -2.91 -0.02 4.82 16 34 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 36 H 0.11 6.40 6.12 -2.91 -0.02 6.38 16 37 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -64.40 307.67 4.98 -59.42 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.04 Total: 25.61 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 3.86 Total: -54.05 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.24 Total: -45.17 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -2.19 Total: -27.09 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -64.40 4.98 -59.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.772 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds