Wall clock time and date at job start Mon Mar 30 2020 18:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 H 1.08996 * 109.47150 * 305.00437 * 3 2 1 5 5 C 1.52993 * 109.47183 * 185.00047 * 3 2 1 6 6 O 1.42901 * 109.47094 * 65.00106 * 3 2 1 7 7 C 1.35742 * 116.99984 * 210.00080 * 6 3 2 8 8 C 1.41196 * 120.28304 * 270.25153 * 7 6 3 9 9 C 1.41182 * 120.26686 * 0.02562 * 8 7 6 10 10 H 1.08001 * 119.99934 * 335.28118 * 9 8 7 11 11 C 1.39914 * 119.99806 * 155.28149 * 9 8 7 12 12 N 1.30866 * 120.00512 * 342.09666 * 11 9 8 13 13 Si 1.86810 * 119.99986 * 162.09788 * 11 9 8 14 14 H 1.48496 * 109.47099 * 89.99653 * 13 11 9 15 15 H 1.48490 * 109.47390 * 209.99940 * 13 11 9 16 16 H 1.48502 * 109.46819 * 329.99786 * 13 11 9 17 17 C 1.40773 * 119.46681 * 180.25050 * 8 7 6 18 18 C 1.36487 * 120.02370 * 359.47255 * 17 8 7 19 19 C 1.38768 * 120.58069 * 0.30187 * 18 17 8 20 20 C 1.38709 * 120.54070 * 359.95590 * 19 18 17 21 21 O 1.36004 * 120.02387 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00012 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47115 * 59.99741 * 1 2 3 24 24 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46835 * 299.99946 * 1 2 3 26 26 H 1.09002 * 109.46835 * 240.00053 * 2 1 3 27 27 H 1.09002 * 109.47315 * 120.00452 * 2 1 3 28 28 H 1.08996 * 109.47396 * 300.00239 * 5 3 2 29 29 H 1.09000 * 109.47526 * 60.00117 * 5 3 2 30 30 H 1.09006 * 109.47643 * 179.97438 * 5 3 2 31 31 H 0.97003 * 120.00234 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.98614 * 179.75360 * 17 8 7 33 33 H 1.08000 * 119.71036 * 180.27401 * 18 17 8 34 34 H 1.08005 * 119.73026 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47228 * 300.00415 * 22 21 20 36 36 H 1.08997 * 109.47287 * 60.00415 * 22 21 20 37 37 H 1.08998 * 109.46925 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4506 3.4214 1.1756 8 6 2.5156 4.3186 1.4087 9 6 3.8096 3.8292 1.6903 10 1 3.9336 2.8447 2.1168 11 6 4.9313 4.6196 1.4170 12 7 4.8319 5.6362 0.5990 13 14 6.5710 4.2236 2.2196 14 1 7.3309 3.2845 1.3560 15 1 7.3507 5.4749 2.3962 16 1 6.3347 3.5965 3.5448 17 6 2.2759 5.7050 1.3626 18 6 1.0244 6.1727 1.0837 19 6 -0.0225 5.2923 0.8498 20 6 0.1859 3.9217 0.8945 21 8 -0.8475 3.0684 0.6630 22 6 -2.1206 3.6528 0.3805 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9994 0.9052 0.7160 29 1 3.8532 0.9569 -1.0571 30 1 3.9282 2.4719 -0.1262 31 1 5.6096 6.1840 0.4092 32 1 3.0837 6.3988 1.5435 33 1 0.8471 7.2374 1.0453 34 1 -1.0074 5.6775 0.6308 35 1 -2.4327 4.2689 1.2238 36 1 -2.0459 4.2716 -0.5136 37 1 -2.8542 2.8635 0.2164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:42 Heat of formation + Delta-G solvation = -72.944277 kcal Electronic energy + Delta-G solvation = -19229.389621 eV Core-core repulsion = 16357.797849 eV Total energy + Delta-G solvation = -2871.591772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.11012 -37.34691 -35.98313 -33.54579 -33.03001 -29.43711 -29.21808 -28.27546 -26.43821 -25.00575 -23.13250 -20.99545 -20.78233 -19.86951 -17.81960 -16.65311 -15.76864 -15.46280 -14.95324 -14.77981 -14.11219 -13.82040 -13.55941 -13.25979 -12.93527 -12.84216 -12.26401 -11.88677 -11.67319 -11.52735 -11.36463 -11.20006 -10.96896 -10.81907 -10.62981 -10.56424 -10.38163 -10.16534 -10.00713 -9.79572 -9.47068 -9.12428 -8.48525 -7.41765 -6.93318 -6.75244 -4.39642 2.65256 2.91299 3.04020 3.08515 3.18648 3.87026 4.25365 4.50870 4.92377 5.48315 5.64223 5.64625 5.70296 5.73426 5.85154 5.89802 6.14416 6.19298 6.26796 6.32625 6.39546 6.42221 6.54989 6.68404 6.83832 6.86789 6.95186 6.98231 7.11887 7.23758 7.33463 7.64374 7.75469 7.93646 8.04260 8.41190 8.46230 8.73174 8.80565 9.26445 10.06878 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.009583 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.753122 B = 2921.016514 C = 4093.631453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.045 0.955 5 C -0.178 4.178 6 O -0.305 6.305 7 C -0.059 4.059 8 C 0.126 3.874 9 C -0.433 4.433 10 H 0.089 0.911 11 C 0.074 3.926 12 N -0.784 5.784 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.258 1.258 17 C -0.181 4.181 18 C -0.077 4.077 19 C -0.320 4.320 20 C 0.133 3.867 21 O -0.317 6.317 22 C 0.034 3.966 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.282 0.718 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -3.819 -1.652 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.064 0.936 5 C -0.235 4.235 6 O -0.221 6.221 7 C -0.104 4.104 8 C 0.122 3.878 9 C -0.461 4.461 10 H 0.107 0.893 11 C -0.145 4.145 12 N -0.409 5.409 13 Si 0.730 3.270 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.182 1.182 17 C -0.201 4.201 18 C -0.096 4.096 19 C -0.341 4.341 20 C 0.089 3.911 21 O -0.231 6.231 22 C -0.062 4.062 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.960 -3.962 -1.618 5.831 hybrid contribution 0.623 0.404 -0.115 0.751 sum -3.337 -3.558 -1.733 5.177 Atomic orbital electron populations 1.21659 0.95673 0.99809 1.02849 1.21604 0.96389 0.96219 1.01268 1.22150 0.93799 0.92161 0.88280 0.93646 1.22535 0.96650 1.04743 0.99563 1.86032 1.87818 1.17924 1.30339 1.17888 0.90055 0.83119 1.19363 1.17643 0.91704 0.90893 0.87512 1.19536 0.89616 1.02349 1.34597 0.89266 1.25984 1.01525 0.93849 0.93105 1.69858 1.32284 1.14130 1.24598 0.86336 0.80717 0.78946 0.81049 1.19298 1.20051 1.18178 1.20929 0.95671 0.95592 1.07861 1.20206 0.93340 0.96974 0.99084 1.20288 0.99103 0.91629 1.23035 1.19196 0.86776 0.88636 0.96538 1.86080 1.16502 1.34562 1.85968 1.22775 0.84665 0.98999 0.99741 0.93476 0.94190 0.91251 0.92067 0.91863 0.92966 0.94229 0.89202 0.90683 0.86183 0.89184 0.88588 0.93691 0.93783 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.81 37.16 0.36 -1.96 16 2 C -0.12 -2.01 5.64 -26.73 -0.15 -2.16 16 3 C 0.09 1.93 2.78 -26.74 -0.07 1.85 16 4 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 5 C -0.18 -3.60 8.37 37.15 0.31 -3.28 16 6 O -0.30 -7.34 8.40 -33.47 -0.28 -7.62 16 7 C -0.06 -1.49 5.61 -38.22 -0.21 -1.71 16 8 C 0.13 3.32 5.56 -106.70 -0.59 2.73 16 9 C -0.43 -11.07 5.83 -37.84 -0.22 -11.29 16 10 H 0.09 2.29 7.11 -52.49 -0.37 1.92 16 11 C 0.07 1.79 5.13 -17.34 -0.09 1.70 16 12 N -0.78 -19.36 10.99 55.55 0.61 -18.75 16 13 Si 0.91 18.22 29.60 -169.99 -5.03 13.19 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 17 C -0.18 -4.63 8.64 -39.26 -0.34 -4.97 16 18 C -0.08 -1.81 9.96 -40.02 -0.40 -2.21 16 19 C -0.32 -7.27 9.05 -39.21 -0.35 -7.63 16 20 C 0.13 3.16 6.69 -39.17 -0.26 2.90 16 21 O -0.32 -6.68 9.82 -34.29 -0.34 -7.01 16 22 C 0.03 0.54 9.81 101.05 0.99 1.53 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.28 7.36 -51.93 -0.38 0.90 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.09 5.73 -51.93 -0.30 1.79 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 32 H 0.12 3.12 6.19 -52.48 -0.32 2.80 16 33 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.10 1.91 6.27 -52.48 -0.33 1.59 16 35 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -27.28 302.22 -6.94 -34.22 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.43 Total: 5.92 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -1.03 Total: -24.50 kcal Atomic # 7 Polarization: -19.36 SS G_CDS: 0.61 Total: -18.75 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.62 Total: -14.63 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.28 -6.94 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.721 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds