Wall clock time and date at job start Mon Mar 30 2020 18:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 H 1.08996 * 109.47150 * 305.00437 * 3 2 1 5 5 C 1.52993 * 109.47183 * 185.00047 * 3 2 1 6 6 O 1.42901 * 109.47094 * 65.00106 * 3 2 1 7 7 C 1.35742 * 116.99984 * 210.00080 * 6 3 2 8 8 C 1.41196 * 120.28304 * 270.25153 * 7 6 3 9 9 C 1.41182 * 120.26686 * 0.02562 * 8 7 6 10 10 H 1.08001 * 119.99934 * 335.28118 * 9 8 7 11 11 C 1.39914 * 119.99806 * 155.28149 * 9 8 7 12 12 N 1.30866 * 120.00512 * 342.09666 * 11 9 8 13 13 Si 1.86810 * 119.99986 * 162.09788 * 11 9 8 14 14 H 1.48496 * 109.47099 * 89.99653 * 13 11 9 15 15 H 1.48490 * 109.47390 * 209.99940 * 13 11 9 16 16 H 1.48502 * 109.46819 * 329.99786 * 13 11 9 17 17 C 1.40773 * 119.46681 * 180.25050 * 8 7 6 18 18 C 1.36487 * 120.02370 * 359.47255 * 17 8 7 19 19 C 1.38768 * 120.58069 * 0.30187 * 18 17 8 20 20 C 1.38709 * 120.54070 * 359.95590 * 19 18 17 21 21 O 1.36004 * 120.02387 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00012 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47115 * 59.99741 * 1 2 3 24 24 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46835 * 299.99946 * 1 2 3 26 26 H 1.09002 * 109.46835 * 240.00053 * 2 1 3 27 27 H 1.09002 * 109.47315 * 120.00452 * 2 1 3 28 28 H 1.08996 * 109.47396 * 300.00239 * 5 3 2 29 29 H 1.09000 * 109.47526 * 60.00117 * 5 3 2 30 30 H 1.09006 * 109.47643 * 179.97438 * 5 3 2 31 31 H 0.97003 * 120.00234 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.98614 * 179.75360 * 17 8 7 33 33 H 1.08000 * 119.71036 * 180.27401 * 18 17 8 34 34 H 1.08005 * 119.73026 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47228 * 300.00415 * 22 21 20 36 36 H 1.08997 * 109.47287 * 60.00415 * 22 21 20 37 37 H 1.08998 * 109.46925 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4506 3.4214 1.1756 8 6 2.5156 4.3186 1.4087 9 6 3.8096 3.8292 1.6903 10 1 3.9336 2.8447 2.1168 11 6 4.9313 4.6196 1.4170 12 7 4.8319 5.6362 0.5990 13 14 6.5710 4.2236 2.2196 14 1 7.3309 3.2845 1.3560 15 1 7.3507 5.4749 2.3962 16 1 6.3347 3.5965 3.5448 17 6 2.2759 5.7050 1.3626 18 6 1.0244 6.1727 1.0837 19 6 -0.0225 5.2923 0.8498 20 6 0.1859 3.9217 0.8945 21 8 -0.8475 3.0684 0.6630 22 6 -2.1206 3.6528 0.3805 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9994 0.9052 0.7160 29 1 3.8532 0.9569 -1.0571 30 1 3.9282 2.4719 -0.1262 31 1 5.6096 6.1840 0.4092 32 1 3.0837 6.3988 1.5435 33 1 0.8471 7.2374 1.0453 34 1 -1.0074 5.6775 0.6308 35 1 -2.4327 4.2689 1.2238 36 1 -2.0459 4.2716 -0.5136 37 1 -2.8542 2.8635 0.2164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:42 Heat of formation + Delta-G solvation = -86.860726 kcal Electronic energy + Delta-G solvation = -19229.993084 eV Core-core repulsion = 16357.797849 eV Total energy + Delta-G solvation = -2872.195235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84967 -39.00771 -37.74574 -35.35730 -34.60665 -31.29379 -30.76033 -29.95977 -27.97837 -26.80811 -24.64491 -22.69051 -22.58063 -21.52377 -19.58973 -18.42986 -17.53126 -17.18483 -16.59464 -16.37899 -15.75796 -15.41271 -15.18339 -14.86025 -14.51113 -14.41714 -13.88497 -13.54830 -13.35815 -13.15035 -12.98419 -12.73179 -12.47333 -12.39172 -12.32737 -12.07247 -11.88454 -11.84032 -11.65891 -11.49927 -11.17626 -10.92297 -10.24575 -9.29726 -8.74666 -8.56904 -6.30539 0.84383 1.08053 1.38299 1.47693 1.54291 2.19207 2.66332 2.74112 3.19347 3.76249 4.11100 4.25159 4.34789 4.38820 4.47729 4.52945 4.55835 4.61500 4.76160 4.82944 4.87702 4.97514 5.03992 5.09149 5.10636 5.20196 5.29036 5.34803 5.44130 5.57711 5.64616 5.79311 5.94440 6.07476 6.14548 6.53213 6.71556 6.84611 6.93469 7.44139 8.28102 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.009583 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.753122 B = 2921.016514 C = 4093.631453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.089 3.911 4 H 0.026 0.974 5 C -0.171 4.171 6 O -0.320 6.320 7 C -0.081 4.081 8 C 0.098 3.902 9 C -0.452 4.452 10 H 0.077 0.923 11 C 0.041 3.959 12 N -0.811 5.811 13 Si 0.971 3.029 14 H -0.260 1.260 15 H -0.264 1.264 16 H -0.261 1.261 17 C -0.208 4.208 18 C -0.079 4.079 19 C -0.320 4.320 20 C 0.127 3.873 21 O -0.329 6.329 22 C 0.024 3.976 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.290 0.710 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -4.711 -2.122 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.033 3.967 4 H 0.044 0.956 5 C -0.228 4.228 6 O -0.237 6.237 7 C -0.127 4.127 8 C 0.095 3.905 9 C -0.480 4.480 10 H 0.095 0.905 11 C -0.176 4.176 12 N -0.436 5.436 13 Si 0.792 3.208 14 H -0.185 1.185 15 H -0.188 1.188 16 H -0.185 1.185 17 C -0.227 4.227 18 C -0.097 4.097 19 C -0.340 4.340 20 C 0.082 3.918 21 O -0.243 6.243 22 C -0.071 4.071 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.604 -4.850 -2.100 7.009 hybrid contribution 0.662 0.655 -0.031 0.932 sum -3.942 -4.196 -2.130 6.138 Atomic orbital electron populations 1.21585 0.94966 1.01330 1.01436 1.21613 0.97003 0.93542 1.02749 1.22330 0.94036 0.93867 0.86451 0.95569 1.22422 0.96402 1.02872 1.01093 1.85960 1.88073 1.17483 1.32160 1.18154 0.90946 0.83638 1.19949 1.17992 0.92618 0.91650 0.88279 1.19533 0.90370 1.02330 1.35816 0.90519 1.26686 1.04394 0.93455 0.93043 1.69890 1.33639 1.14866 1.25188 0.85359 0.76570 0.79157 0.79742 1.18469 1.18806 1.18536 1.20923 0.96459 0.95292 1.10043 1.20517 0.92699 0.98606 0.97898 1.20626 1.00255 0.91202 1.21875 1.19304 0.87195 0.89386 0.95899 1.86061 1.17662 1.34908 1.85659 1.23144 0.82846 1.00691 1.00378 0.93684 0.91143 0.93808 0.89184 0.91615 0.92766 0.91401 0.92644 0.89881 0.87450 0.86540 0.85512 0.92801 0.92972 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.81 71.98 0.71 -3.48 16 2 C -0.11 -3.63 5.64 30.59 0.17 -3.46 16 3 C 0.09 3.73 2.78 30.59 0.09 3.81 16 4 H 0.03 1.17 7.90 -2.39 -0.02 1.15 16 5 C -0.17 -6.93 8.37 71.98 0.60 -6.33 16 6 O -0.32 -15.77 8.40 -76.76 -0.64 -16.41 16 7 C -0.08 -4.25 5.61 23.15 0.13 -4.12 16 8 C 0.10 5.35 5.56 -21.21 -0.12 5.24 16 9 C -0.45 -24.06 5.83 23.40 0.14 -23.92 16 10 H 0.08 4.13 7.11 -2.91 -0.02 4.11 16 11 C 0.04 2.01 5.13 85.24 0.44 2.45 16 12 N -0.81 -41.02 10.99 21.82 0.24 -40.78 16 13 Si 0.97 37.74 29.60 68.60 2.03 39.77 16 14 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 17 C -0.21 -10.93 8.64 22.48 0.19 -10.74 16 18 C -0.08 -3.67 9.96 21.99 0.22 -3.45 16 19 C -0.32 -14.20 9.05 22.51 0.20 -14.00 16 20 C 0.13 6.06 6.69 22.54 0.15 6.21 16 21 O -0.33 -13.52 9.82 -79.70 -0.78 -14.31 16 22 C 0.02 0.70 9.81 113.37 1.11 1.82 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.56 7.36 -2.39 -0.02 1.55 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.65 5.73 -2.38 -0.01 2.64 16 31 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 32 H 0.11 5.80 6.19 -2.91 -0.02 5.79 16 33 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.13 4.73 6.27 -2.91 -0.02 4.72 16 35 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 36 H 0.05 1.44 7.66 -2.39 -0.02 1.42 16 37 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -60.66 302.22 5.92 -54.74 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 1.05 Total: 26.96 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 4.03 Total: -49.97 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.43 Total: -30.72 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -60.66 5.92 -54.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.121 kcal (2) G-P(sol) polarization free energy of solvation -60.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds