Wall clock time and date at job start Mon Mar 30 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 H 1.09005 * 109.46959 * 54.99716 * 3 2 1 5 5 C 1.52998 * 109.47423 * 174.99860 * 3 2 1 6 6 O 1.42903 * 109.47027 * 295.00038 * 3 2 1 7 7 C 1.35745 * 117.00260 * 149.99778 * 6 3 2 8 8 C 1.41189 * 120.27996 * 89.99794 * 7 6 3 9 9 C 1.41182 * 120.26889 * 359.97438 * 8 7 6 10 10 H 1.07997 * 119.99568 * 25.11410 * 9 8 7 11 11 C 1.39921 * 120.00175 * 205.11176 * 9 8 7 12 12 N 1.30872 * 120.00044 * 17.41526 * 11 9 8 13 13 Si 1.86799 * 119.99959 * 197.41879 * 11 9 8 14 14 H 1.48493 * 109.47429 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46855 * 120.00055 * 13 11 9 16 16 H 1.48496 * 109.47287 * 239.99617 * 13 11 9 17 17 C 1.40769 * 119.46891 * 180.02562 * 8 7 6 18 18 C 1.36494 * 120.02405 * 359.97374 * 17 8 7 19 19 C 1.38770 * 120.57798 * 0.02725 * 18 17 8 20 20 C 1.38710 * 120.53647 * 359.71867 * 19 18 17 21 21 O 1.36010 * 120.02309 * 180.28771 * 20 19 18 22 22 C 1.42903 * 116.99575 * 0.24757 * 21 20 19 23 23 H 1.09002 * 109.47459 * 300.00550 * 1 2 3 24 24 H 1.09006 * 109.46795 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47353 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47491 * 239.99854 * 2 1 3 27 27 H 1.09002 * 109.46761 * 119.99675 * 2 1 3 28 28 H 1.08999 * 109.46533 * 299.99965 * 5 3 2 29 29 H 1.08995 * 109.47076 * 59.99434 * 5 3 2 30 30 H 1.08996 * 109.47033 * 180.02562 * 5 3 2 31 31 H 0.96999 * 120.00127 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.99001 * 180.02562 * 17 8 7 33 33 H 1.07999 * 119.70902 * 180.02562 * 18 17 8 34 34 H 1.08000 * 119.72980 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47450 * 299.99828 * 22 21 20 36 36 H 1.08994 * 109.47058 * 60.00707 * 22 21 20 37 37 H 1.09004 * 109.46768 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.4505 3.4215 -1.1757 8 6 2.5144 4.3186 -1.4139 9 6 3.8073 3.8292 -1.7008 10 1 3.9292 2.8470 -2.1330 11 6 4.9306 4.6167 -1.4253 12 7 4.8317 5.6347 -0.6088 13 14 6.5713 4.2149 -2.2228 14 1 6.4181 3.0252 -3.0981 15 1 7.0228 5.3725 -3.0362 16 1 7.5771 3.9283 -1.1687 17 6 2.2761 5.7050 -1.3621 18 6 1.0244 6.1728 -1.0838 19 6 -0.0224 5.2924 -0.8494 20 6 0.1848 3.9218 -0.8998 21 8 -0.8499 3.0684 -0.6741 22 6 -2.1240 3.6528 -0.3963 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8531 0.9570 1.0572 29 1 3.9995 0.9052 -0.7160 30 1 3.9281 2.4720 0.1262 31 1 5.6103 6.1808 -0.4181 32 1 3.0837 6.3987 -1.5434 33 1 0.8471 7.2375 -1.0457 34 1 -1.0074 5.6775 -0.6309 35 1 -2.0531 4.2704 0.4991 36 1 -2.4323 4.2701 -1.2401 37 1 -2.8585 2.8636 -0.2356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:45 Heat of formation + Delta-G solvation = -86.922483 kcal Electronic energy + Delta-G solvation = -19228.710443 eV Core-core repulsion = 16356.512530 eV Total energy + Delta-G solvation = -2872.197913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84907 -39.00702 -37.74704 -35.35351 -34.60774 -31.29036 -30.76123 -29.95963 -27.97867 -26.80977 -24.64443 -22.69258 -22.58044 -21.52305 -19.59046 -18.43031 -17.53432 -17.18588 -16.59063 -16.37971 -15.75760 -15.41393 -15.18265 -14.86312 -14.51205 -14.41374 -13.88830 -13.54770 -13.35352 -13.15214 -12.99404 -12.72608 -12.47660 -12.39933 -12.33410 -12.06016 -11.88433 -11.83476 -11.65692 -11.49270 -11.17727 -10.93201 -10.24720 -9.29557 -8.74340 -8.56668 -6.30841 0.83645 1.07828 1.38417 1.49347 1.52993 2.19449 2.66210 2.74199 3.19066 3.76139 4.11008 4.25086 4.34739 4.38730 4.47785 4.52898 4.55822 4.61472 4.76173 4.82939 4.87699 4.97495 5.04085 5.09230 5.10585 5.20150 5.29292 5.34862 5.44146 5.57659 5.64544 5.79257 5.94428 6.07588 6.14569 6.53520 6.71498 6.84758 6.93648 7.43937 8.28570 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.009585 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.845996 B = 2920.381614 C = 4093.826155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.089 3.911 4 H 0.026 0.974 5 C -0.170 4.170 6 O -0.320 6.320 7 C -0.081 4.081 8 C 0.097 3.903 9 C -0.451 4.451 10 H 0.076 0.924 11 C 0.040 3.960 12 N -0.812 5.812 13 Si 0.972 3.028 14 H -0.260 1.260 15 H -0.263 1.263 16 H -0.263 1.263 17 C -0.207 4.207 18 C -0.079 4.079 19 C -0.319 4.319 20 C 0.127 3.873 21 O -0.329 6.329 22 C 0.024 3.976 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.290 0.710 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -4.709 2.122 7.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.033 3.967 4 H 0.045 0.955 5 C -0.228 4.228 6 O -0.237 6.237 7 C -0.126 4.126 8 C 0.094 3.906 9 C -0.480 4.480 10 H 0.094 0.906 11 C -0.176 4.176 12 N -0.437 5.437 13 Si 0.793 3.207 14 H -0.184 1.184 15 H -0.187 1.187 16 H -0.188 1.188 17 C -0.226 4.226 18 C -0.098 4.098 19 C -0.339 4.339 20 C 0.082 3.918 21 O -0.243 6.243 22 C -0.071 4.071 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.652 -4.854 2.097 7.043 hybrid contribution 0.664 0.662 0.024 0.938 sum -3.988 -4.193 2.120 6.162 Atomic orbital electron populations 1.21589 0.94965 1.01334 1.01438 1.21613 0.97003 0.93539 1.02750 1.22335 0.94051 0.93862 0.86431 0.95546 1.22413 0.96393 1.02844 1.01105 1.85957 1.88076 1.17491 1.32186 1.18154 0.90934 0.83656 1.19868 1.17995 0.92638 0.91651 0.88302 1.19557 0.90370 1.02490 1.35569 0.90581 1.26687 1.04403 0.93490 0.93043 1.69897 1.33572 1.14923 1.25281 0.85300 0.76584 0.79664 0.79190 1.18413 1.18711 1.18814 1.20931 0.96454 0.95301 1.09943 1.20524 0.92695 0.98614 0.97941 1.20631 1.00273 0.91198 1.21761 1.19301 0.87157 0.89391 0.95980 1.86064 1.17516 1.34905 1.85813 1.23146 0.82815 1.00694 1.00409 0.93677 0.93810 0.91139 0.91636 0.89160 0.91341 0.92795 0.92678 0.89911 0.87415 0.86528 0.85496 0.92966 0.92797 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.81 71.98 0.71 -3.48 16 2 C -0.11 -3.63 5.64 30.60 0.17 -3.46 16 3 C 0.09 3.73 2.78 30.59 0.09 3.81 16 4 H 0.03 1.18 7.91 -2.38 -0.02 1.16 16 5 C -0.17 -6.91 8.40 71.98 0.60 -6.30 16 6 O -0.32 -15.79 8.40 -76.79 -0.64 -16.44 16 7 C -0.08 -4.21 5.61 23.15 0.13 -4.08 16 8 C 0.10 5.33 5.56 -21.21 -0.12 5.21 16 9 C -0.45 -24.04 5.84 23.40 0.14 -23.90 16 10 H 0.08 4.11 7.16 -2.91 -0.02 4.09 16 11 C 0.04 1.98 5.14 85.24 0.44 2.42 16 12 N -0.81 -41.08 10.97 21.83 0.24 -40.84 16 13 Si 0.97 37.83 29.59 68.60 2.03 39.86 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 15 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 17 C -0.21 -10.88 8.63 22.48 0.19 -10.69 16 18 C -0.08 -3.69 9.96 21.99 0.22 -3.47 16 19 C -0.32 -14.15 9.05 22.51 0.20 -13.94 16 20 C 0.13 6.03 6.69 22.53 0.15 6.18 16 21 O -0.33 -13.52 9.82 -79.76 -0.78 -14.30 16 22 C 0.02 0.70 9.81 113.37 1.11 1.81 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.56 7.35 -2.38 -0.02 1.55 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 2.63 5.76 -2.39 -0.01 2.62 16 31 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 32 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 33 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.13 4.73 6.27 -2.91 -0.02 4.71 16 35 H 0.05 1.44 7.65 -2.39 -0.02 1.42 16 36 H 0.05 1.48 7.67 -2.39 -0.02 1.46 16 37 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -60.75 302.31 5.92 -54.82 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.05 Total: 26.79 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 4.03 Total: -49.89 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.24 Total: -40.84 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.43 Total: -30.74 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -60.75 5.92 -54.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.100 kcal (2) G-P(sol) polarization free energy of solvation -60.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds