Wall clock time and date at job start Mon Mar 30 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 O 1.42899 * 109.47047 * 120.00416 * 2 1 3 5 5 C 1.42898 * 113.99995 * 150.00009 * 4 2 1 6 6 C 1.52996 * 109.47476 * 180.02562 * 5 4 2 7 7 O 1.42896 * 109.47131 * 64.99326 * 6 5 4 8 8 C 1.35642 * 117.00365 * 180.02562 * 7 6 5 9 9 C 1.38449 * 120.26131 * 0.28192 * 8 7 6 10 10 C 1.38309 * 120.04764 * 180.25632 * 9 8 7 11 11 C 1.38823 * 120.59178 * 359.74123 * 10 9 8 12 12 C 1.36486 * 120.54052 * 359.97438 * 11 10 9 13 13 C 1.40723 * 119.92690 * 0.02562 * 12 11 10 14 14 C 1.41149 * 120.28821 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00238 * 205.26740 * 14 13 12 16 16 C 1.39941 * 120.00200 * 25.26787 * 14 13 12 17 17 N 1.30862 * 119.99614 * 26.52478 * 16 14 13 18 18 Si 1.86803 * 120.00095 * 206.52797 * 16 14 13 19 19 H 1.48500 * 109.46947 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46859 * 299.99821 * 18 16 14 21 21 H 1.48501 * 109.47170 * 59.99665 * 18 16 14 22 22 H 1.09003 * 109.46914 * 300.00078 * 1 2 3 23 23 H 1.09005 * 109.47062 * 59.99591 * 1 2 3 24 24 H 1.08996 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46643 * 240.00632 * 2 1 3 26 26 H 1.08995 * 109.47432 * 300.00318 * 3 2 1 27 27 H 1.09008 * 109.46962 * 60.00488 * 3 2 1 28 28 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47056 * 59.99642 * 5 4 2 30 30 H 1.09000 * 109.47139 * 299.99937 * 5 4 2 31 31 H 1.09007 * 109.46852 * 305.00256 * 6 5 4 32 32 H 1.08992 * 109.47653 * 184.99991 * 6 5 4 33 33 H 1.08001 * 119.97891 * 359.97153 * 9 8 7 34 34 H 1.07997 * 119.70209 * 179.76369 * 10 9 8 35 35 H 1.07998 * 119.73084 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.03916 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00148 * 5.89107 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6755 -2.0093 2.2940 7 8 2.7489 -3.0548 2.5945 8 6 2.9694 -3.7661 3.7282 9 6 4.0489 -3.4659 4.5414 10 6 4.2726 -4.1975 5.6936 11 6 3.4192 -5.2329 6.0499 12 6 2.3444 -5.5457 5.2690 13 6 2.0958 -4.8158 4.0918 14 6 0.9869 -5.1332 3.2782 15 1 1.0028 -4.8922 2.2255 16 6 -0.1333 -5.7600 3.8356 17 7 -0.4089 -5.5996 5.1047 18 14 -1.2349 -6.8259 2.7679 19 1 -2.3445 -7.3707 3.5908 20 1 -1.7948 -6.0074 1.6625 21 1 -0.4416 -7.9462 2.2016 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 4.0199 -0.5874 0.7124 30 1 3.1809 -2.0707 0.1985 31 1 3.6742 -1.2790 3.1032 32 1 4.6752 -2.4299 2.1857 33 1 4.7194 -2.6628 4.2735 34 1 5.1186 -3.9610 6.3219 35 1 3.6072 -5.7954 6.9525 36 1 1.6856 -6.3525 5.5541 37 1 0.1115 -4.9798 5.6395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230271539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:49 Heat of formation + Delta-G solvation = -82.536811 kcal Electronic energy + Delta-G solvation = -18188.243947 eV Core-core repulsion = 15316.236211 eV Total energy + Delta-G solvation = -2872.007736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.90630 -38.06855 -36.19473 -33.73887 -32.85589 -29.95064 -29.08488 -28.21456 -27.20162 -24.88921 -22.92018 -21.26011 -20.81544 -20.36943 -17.99691 -17.00285 -16.55251 -15.40002 -15.10364 -14.57295 -14.46252 -14.37182 -13.97465 -13.26225 -13.13393 -12.66632 -12.55551 -12.41690 -12.19499 -12.00648 -11.74159 -11.43561 -11.18423 -11.03727 -10.82575 -10.63639 -10.42144 -10.32794 -9.95928 -9.88743 -9.44270 -9.33242 -8.87093 -7.61980 -7.25458 -6.92471 -4.23099 2.77741 2.91052 3.22259 3.33264 3.43032 3.78048 4.10373 4.22269 4.64184 4.88060 5.01912 5.18028 5.29010 5.40411 5.50227 5.53433 5.59216 5.63981 5.74860 5.84409 5.88796 6.01352 6.05338 6.15885 6.24780 6.28458 6.41217 6.88065 7.09072 7.22874 7.41801 7.55964 7.69623 7.86899 8.00584 8.17885 8.30063 8.46732 8.93605 9.04279 10.14431 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.007111 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.965223 B = 3936.651941 C = 5365.716238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.174 4.174 4 O -0.368 6.368 5 C 0.068 3.932 6 C 0.065 3.935 7 O -0.298 6.298 8 C 0.010 3.990 9 C -0.169 4.169 10 C -0.231 4.231 11 C -0.106 4.106 12 C -0.207 4.207 13 C 0.087 3.913 14 C -0.503 4.503 15 H 0.080 0.920 16 C 0.038 3.962 17 N -0.798 5.798 18 Si 1.064 2.936 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.275 1.275 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 8.272 -8.703 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.232 4.232 4 O -0.288 6.288 5 C -0.009 4.009 6 C -0.011 4.011 7 O -0.213 6.213 8 C -0.034 4.034 9 C -0.189 4.189 10 C -0.251 4.251 11 C -0.124 4.124 12 C -0.227 4.227 13 C 0.084 3.916 14 C -0.531 4.531 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.422 5.422 18 Si 0.888 3.112 19 H -0.199 1.199 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.833 7.265 -8.571 11.384 hybrid contribution 1.940 1.272 -0.057 2.321 sum 3.773 8.537 -8.628 12.711 Atomic orbital electron populations 1.21848 0.93647 1.03183 1.02042 1.22059 0.95294 0.92047 0.88545 1.22313 1.01233 0.97222 1.02397 1.88093 1.36415 1.69599 1.34655 1.22544 0.86103 0.94812 0.97392 1.22485 0.92589 0.90004 0.96062 1.86012 1.49931 1.44899 1.40424 1.19107 0.99364 0.95900 0.89064 1.20636 0.98466 1.01932 0.97819 1.20044 1.02727 1.02576 0.99747 1.20282 0.95906 0.97757 0.98488 1.20651 1.00614 1.02653 0.98763 1.17097 0.92726 0.89038 0.92753 1.20394 1.00125 1.34545 0.98059 0.90235 1.27001 0.97818 0.96493 0.97027 1.70457 1.36614 1.27347 1.07750 0.83660 0.75812 0.76416 0.75314 1.19944 1.20147 1.20053 0.91807 0.91684 0.91544 0.92489 0.91907 0.91791 0.92754 0.92318 0.92530 0.92576 0.92053 0.88763 0.89302 0.89273 0.87226 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.56 37.16 0.36 -1.50 16 2 C 0.08 1.02 3.34 -26.73 -0.09 0.93 16 3 C -0.17 -1.83 9.53 37.16 0.35 -1.48 16 4 O -0.37 -6.32 9.95 -40.09 -0.40 -6.72 16 5 C 0.07 1.04 6.13 37.16 0.23 1.27 16 6 C 0.07 1.18 5.12 37.16 0.19 1.38 16 7 O -0.30 -7.20 9.40 -23.48 -0.22 -7.42 16 8 C 0.01 0.25 6.72 -38.33 -0.26 0.00 16 9 C -0.17 -3.97 9.04 -39.48 -0.36 -4.33 16 10 C -0.23 -5.35 10.04 -39.34 -0.39 -5.75 16 11 C -0.11 -2.55 9.97 -40.00 -0.40 -2.95 16 12 C -0.21 -5.50 7.93 -39.28 -0.31 -5.81 16 13 C 0.09 2.42 5.30 -106.68 -0.57 1.86 16 14 C -0.50 -14.12 8.64 -37.84 -0.33 -14.44 16 15 H 0.08 2.25 7.72 -52.48 -0.41 1.84 16 16 C 0.04 1.00 4.91 -17.33 -0.09 0.92 16 17 N -0.80 -21.94 12.32 55.55 0.68 -21.25 16 18 Si 1.06 22.48 30.01 -169.99 -5.10 17.38 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.67 7.79 -51.93 -0.40 0.26 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.05 0.54 7.87 -51.93 -0.41 0.13 16 29 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 30 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 32 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.09 1.91 6.31 -52.49 -0.33 1.58 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.11 2.96 6.52 -52.49 -0.34 2.62 16 37 H 0.30 8.46 6.78 -40.82 -0.28 8.18 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -30.45 310.33 -7.57 -38.02 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.55 Total: 5.23 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -1.66 Total: -29.91 kcal Atomic # 7 Polarization: -21.94 SS G_CDS: 0.68 Total: -21.25 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.62 Total: -14.15 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.10 Total: 17.38 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.45 -7.57 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230271539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.520 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds