Wall clock time and date at job start Mon Mar 30 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46993 * 2 1 4 4 H 1.08997 * 109.47178 * 303.50920 * 3 2 1 5 5 C 1.53001 * 109.47236 * 183.50675 * 3 2 1 6 6 O 1.42904 * 109.47248 * 305.00748 * 5 3 2 7 7 C 1.35642 * 117.00106 * 180.02562 * 6 5 3 8 8 C 1.38444 * 120.26327 * 0.26655 * 7 6 5 9 9 C 1.38308 * 120.04733 * 180.26089 * 8 7 6 10 10 C 1.38822 * 120.59444 * 359.74711 * 9 8 7 11 11 C 1.36494 * 120.53593 * 359.96959 * 10 9 8 12 12 C 1.40723 * 119.92643 * 0.02881 * 11 10 9 13 13 C 1.41157 * 120.28454 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99803 * 208.32426 * 13 12 11 15 15 C 1.39927 * 120.00452 * 28.32078 * 13 12 11 16 16 N 1.30868 * 120.00535 * 197.77983 * 15 13 12 17 17 Si 1.86806 * 119.99902 * 17.77785 * 15 13 12 18 18 H 1.48497 * 109.47303 * 269.99858 * 17 15 13 19 19 H 1.48498 * 109.46897 * 29.99993 * 17 15 13 20 20 H 1.48498 * 109.46877 * 149.99920 * 17 15 13 21 21 O 1.42903 * 109.46813 * 63.51272 * 3 2 1 22 22 C 1.42900 * 113.99613 * 209.96425 * 21 3 2 23 23 H 1.08999 * 109.46865 * 174.96767 * 1 2 3 24 24 H 1.09001 * 109.47166 * 294.96582 * 1 2 3 25 25 H 1.09002 * 109.47414 * 54.97269 * 1 2 3 26 26 H 1.09001 * 109.47347 * 240.00625 * 2 1 3 27 27 H 1.08998 * 109.47719 * 120.00085 * 2 1 3 28 28 H 1.08994 * 109.47545 * 185.00371 * 5 3 2 29 29 H 1.09003 * 109.46957 * 64.99755 * 5 3 2 30 30 H 1.07994 * 119.97940 * 359.97438 * 8 7 6 31 31 H 1.07996 * 119.70516 * 179.75882 * 9 8 7 32 32 H 1.07994 * 119.73580 * 180.02562 * 10 9 8 33 33 H 1.08000 * 120.03839 * 180.02562 * 11 10 9 34 34 H 0.97002 * 119.99527 * 355.79152 * 16 15 13 35 35 H 1.09000 * 109.46921 * 301.13368 * 22 21 3 36 36 H 1.08996 * 109.47485 * 61.13517 * 22 21 3 37 37 H 1.09005 * 109.46896 * 181.14107 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6261 1.9742 -0.8568 5 6 3.5674 1.4435 -0.0882 6 8 4.1062 0.6486 0.9700 7 6 5.4570 0.5449 1.0360 8 6 6.2529 1.1962 0.1090 9 6 7.6296 1.0831 0.1773 10 6 8.2276 0.3236 1.1737 11 6 7.4663 -0.3238 2.1033 12 6 6.0635 -0.2240 2.0548 13 6 5.2689 -0.8908 3.0121 14 1 4.2686 -1.2085 2.7568 15 6 5.7769 -1.1403 4.2918 16 7 5.2110 -2.0388 5.0569 17 14 7.2630 -0.1910 4.9082 18 1 8.5032 -0.9219 4.5440 19 1 7.2820 1.1571 4.2859 20 1 7.1849 -0.0537 6.3848 21 8 1.6321 2.0919 1.2059 22 6 1.4300 3.4998 1.0681 23 1 -0.3633 -1.0237 -0.0901 24 1 -0.3633 0.4338 0.9316 25 1 -0.3634 0.5898 -0.8415 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9359 2.4654 0.0011 29 1 3.8761 1.0285 -1.0477 30 1 5.7982 1.7891 -0.6707 31 1 8.2450 1.5902 -0.5510 32 1 9.3040 0.2452 1.2142 33 1 7.9400 -0.9121 2.8753 34 1 4.4036 -2.4880 4.7616 35 1 2.3538 3.9679 0.7283 36 1 0.6401 3.6840 0.3399 37 1 1.1419 3.9214 2.0312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:52 Heat of formation + Delta-G solvation = -77.184077 kcal Electronic energy + Delta-G solvation = -18606.329179 eV Core-core repulsion = 15734.553555 eV Total energy + Delta-G solvation = -2871.775624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17731 -37.96877 -36.05764 -33.61599 -33.36763 -30.36211 -29.36222 -28.21517 -26.50197 -24.60016 -23.58060 -21.60667 -20.50380 -20.23592 -18.05958 -17.29838 -16.34411 -15.63231 -15.21379 -14.62408 -14.52768 -14.31885 -13.97957 -13.61752 -13.29992 -13.24207 -12.64973 -12.25880 -12.12030 -11.92645 -11.65790 -11.31919 -11.14008 -10.97145 -10.73272 -10.55555 -10.43568 -10.34959 -9.93016 -9.66973 -9.38202 -9.28016 -8.94951 -7.73120 -7.30058 -7.01830 -4.33507 2.63809 2.73178 3.26079 3.42621 3.61624 3.85213 4.10511 4.22971 4.61988 4.88456 5.07122 5.22666 5.35676 5.41736 5.44273 5.50976 5.63191 5.63807 5.71936 5.81288 5.93952 6.02909 6.07953 6.10742 6.27912 6.35040 6.54847 6.65965 6.88221 7.07298 7.37035 7.50246 7.54921 7.69535 7.82184 7.99964 8.24323 8.54628 8.69931 8.96973 10.12121 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.007459 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.797078 B = 3752.970084 C = 4438.334771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.096 3.904 4 H 0.070 0.930 5 C 0.040 3.960 6 O -0.290 6.290 7 C 0.023 3.977 8 C -0.172 4.172 9 C -0.222 4.222 10 C -0.099 4.099 11 C -0.233 4.233 12 C 0.085 3.915 13 C -0.494 4.494 14 H 0.081 0.919 15 C 0.039 3.961 16 N -0.819 5.819 17 Si 1.076 2.924 18 H -0.278 1.278 19 H -0.264 1.264 20 H -0.291 1.291 21 O -0.367 6.367 22 C 0.029 3.971 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.285 0.715 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 7.099 -8.570 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.037 4.037 6 O -0.204 6.204 7 C -0.022 4.022 8 C -0.191 4.191 9 C -0.241 4.241 10 C -0.118 4.118 11 C -0.252 4.252 12 C 0.082 3.918 13 C -0.522 4.522 14 H 0.099 0.901 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.903 3.097 18 H -0.205 1.205 19 H -0.189 1.189 20 H -0.219 1.219 21 O -0.286 6.286 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.684 6.968 -6.942 10.894 hybrid contribution -0.945 0.182 -1.903 2.132 sum -5.629 7.150 -8.845 12.690 Atomic orbital electron populations 1.21716 0.95750 1.01238 1.01721 1.21542 0.95746 0.94630 1.03897 1.22278 0.91640 0.94796 0.87466 0.91235 1.23079 0.94134 0.95316 0.91125 1.86054 1.19058 1.66897 1.48364 1.19192 0.81149 1.01727 1.00097 1.20686 0.94740 1.03885 0.99765 1.20100 0.93441 1.08019 1.02568 1.20264 0.97684 0.98084 0.95733 1.20646 0.93191 1.08123 1.03286 1.17202 0.91567 0.91005 0.92070 1.20490 1.02408 1.32210 0.97127 0.90107 1.27260 1.03008 0.93916 0.93716 1.70549 1.17163 1.15579 1.40918 0.83563 0.73680 0.77538 0.74964 1.20483 1.18863 1.21881 1.88071 1.88191 1.19613 1.32694 1.22778 0.99176 0.82668 1.02148 0.92833 0.92110 0.93553 0.90998 0.89507 0.93241 0.92632 0.88587 0.88941 0.88802 0.87238 0.90330 0.94293 0.94534 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.74 37.15 0.36 -1.46 16 2 C -0.12 -1.81 5.39 -26.73 -0.14 -1.95 16 3 C 0.10 1.45 2.52 -26.73 -0.07 1.38 16 4 H 0.07 0.83 7.80 -51.93 -0.41 0.42 16 5 C 0.04 0.71 4.58 37.16 0.17 0.88 16 6 O -0.29 -6.72 8.62 -23.48 -0.20 -6.92 16 7 C 0.02 0.57 6.72 -38.34 -0.26 0.31 16 8 C -0.17 -3.80 9.04 -39.48 -0.36 -4.15 16 9 C -0.22 -4.80 10.04 -39.34 -0.39 -5.19 16 10 C -0.10 -2.23 9.97 -39.99 -0.40 -2.63 16 11 C -0.23 -5.84 7.22 -39.27 -0.28 -6.13 16 12 C 0.08 2.28 5.16 -106.68 -0.55 1.73 16 13 C -0.49 -14.00 9.08 -37.84 -0.34 -14.34 16 14 H 0.08 2.42 7.87 -52.48 -0.41 2.00 16 15 C 0.04 1.09 5.42 -17.33 -0.09 0.99 16 16 N -0.82 -22.85 13.66 55.55 0.76 -22.09 16 17 Si 1.08 25.42 24.89 -169.99 -4.23 21.19 16 18 H -0.28 -6.17 6.43 56.52 0.36 -5.80 16 19 H -0.26 -6.26 7.02 56.52 0.40 -5.87 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 O -0.37 -6.14 9.88 -40.08 -0.40 -6.54 16 22 C 0.03 0.36 10.81 101.05 1.09 1.45 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.81 7.92 -51.93 -0.41 0.39 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.60 7.68 -51.93 -0.40 1.20 16 28 H 0.05 0.83 7.28 -51.93 -0.38 0.46 16 29 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 30 H 0.10 1.83 6.31 -52.49 -0.33 1.50 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.11 2.70 4.33 -52.49 -0.23 2.47 16 34 H 0.29 7.79 8.73 -40.82 -0.36 7.44 16 35 H 0.04 0.47 7.76 -51.93 -0.40 0.06 16 36 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -30.12 303.43 -6.28 -36.40 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.52 Total: 2.51 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.27 Total: -29.12 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.76 Total: -22.09 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.60 Total: -13.46 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.23 Total: 21.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.12 -6.28 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.780 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds