Wall clock time and date at job start Mon Mar 30 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46688 * 2 1 4 4 C 1.42900 * 113.99876 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47522 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47411 * 184.99842 * 5 4 3 7 7 C 1.52999 * 109.47139 * 305.00133 * 5 4 3 8 8 O 1.42903 * 109.47062 * 64.99710 * 5 4 3 9 9 C 1.35642 * 116.99800 * 155.06929 * 8 5 4 10 10 C 1.38443 * 120.27072 * 5.44522 * 9 8 5 11 11 C 1.38298 * 120.05360 * 180.02562 * 10 9 8 12 12 C 1.38818 * 120.59458 * 359.97438 * 11 10 9 13 13 C 1.36493 * 120.53836 * 359.97438 * 12 11 10 14 14 C 1.40726 * 119.92358 * 0.27815 * 13 12 11 15 15 C 1.41158 * 120.28728 * 179.72716 * 14 13 12 16 16 H 1.07993 * 120.00214 * 152.37470 * 15 14 13 17 17 C 1.39938 * 119.99633 * 332.37353 * 15 14 13 18 18 N 1.30863 * 119.99887 * 159.67051 * 17 15 14 19 19 Si 1.86803 * 119.99904 * 339.66780 * 17 15 14 20 20 H 1.48497 * 109.47289 * 90.79973 * 19 17 15 21 21 H 1.48504 * 109.46706 * 210.79424 * 19 17 15 22 22 H 1.48495 * 109.47428 * 330.79482 * 19 17 15 23 23 H 1.08999 * 109.47111 * 300.00155 * 1 2 3 24 24 H 1.09001 * 109.47224 * 60.00125 * 1 2 3 25 25 H 1.08994 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47111 * 239.99845 * 2 1 3 27 27 H 1.08996 * 109.47057 * 119.99160 * 2 1 3 28 28 H 1.09008 * 109.47286 * 59.99375 * 4 3 2 29 29 H 1.08998 * 109.47506 * 300.00222 * 4 3 2 30 30 H 1.09000 * 109.46967 * 299.99677 * 7 5 4 31 31 H 1.08998 * 109.47207 * 59.99584 * 7 5 4 32 32 H 1.09004 * 109.47061 * 179.97438 * 7 5 4 33 33 H 1.08004 * 119.97110 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.70337 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.73326 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.03824 * 179.97438 * 13 12 11 37 37 H 0.96995 * 120.00203 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8253 2.9385 -0.0012 6 1 4.9081 3.0255 -0.0912 7 6 3.1570 3.6442 -1.1827 8 8 3.3984 3.5459 1.2199 9 6 4.0762 4.6471 1.6297 10 6 5.0549 5.2040 0.8244 11 6 5.7436 6.3265 1.2469 12 6 5.4632 6.9060 2.4767 13 6 4.5024 6.3776 3.2895 14 6 3.7918 5.2326 2.8840 15 6 2.8006 4.6764 3.7211 16 1 1.9773 4.1256 3.2908 17 6 2.8847 4.8388 5.1085 18 7 1.8166 4.6927 5.8503 19 14 4.5217 5.2639 5.9015 20 1 4.6619 6.7398 5.9870 21 1 4.5765 4.6817 7.2665 22 1 5.6281 4.7083 5.0816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8333 0.9767 -0.8908 29 1 3.8340 0.9766 0.8891 30 1 3.4826 3.1809 -2.1141 31 1 2.0742 3.5571 -1.0927 32 1 3.4377 4.6975 -1.1829 33 1 5.2815 4.7610 -0.1342 34 1 6.5063 6.7560 0.6143 35 1 6.0098 7.7821 2.7930 36 1 4.2912 6.8348 4.2449 37 1 1.8749 4.8048 6.8120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:05 Heat of formation + Delta-G solvation = -70.487988 kcal Electronic energy + Delta-G solvation = -18478.665985 eV Core-core repulsion = 15607.180726 eV Total energy + Delta-G solvation = -2871.485260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.18612 -37.76734 -36.25362 -33.53876 -32.35704 -30.66708 -30.06171 -28.71584 -26.14921 -24.92656 -22.68455 -22.36093 -20.64658 -20.01572 -17.54848 -17.17125 -16.24851 -15.90420 -15.30371 -14.91622 -14.30967 -14.06251 -13.92680 -13.55912 -13.17207 -12.80902 -12.47694 -12.40320 -12.07626 -11.87602 -11.68934 -11.54747 -11.22465 -11.04696 -10.79800 -10.72115 -10.49419 -10.42773 -9.88780 -9.63267 -9.57325 -9.39686 -9.01965 -7.67233 -7.09090 -6.87880 -4.28159 2.62170 2.71954 3.15700 3.26020 3.36501 3.86064 4.03735 4.16214 4.56071 5.07600 5.13723 5.27303 5.35567 5.42368 5.47605 5.49949 5.54158 5.76436 5.87305 5.92658 5.99682 6.01011 6.11221 6.21330 6.22694 6.32956 6.63291 6.67515 6.90584 7.05792 7.22009 7.40659 7.58087 7.66262 7.88041 8.11222 8.34209 8.50118 8.87332 8.95046 10.14474 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.007502 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.357865 B = 3731.514325 C = 4858.639617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.372 6.372 4 C 0.071 3.929 5 C 0.086 3.914 6 H 0.075 0.925 7 C -0.171 4.171 8 O -0.288 6.288 9 C 0.029 3.971 10 C -0.173 4.173 11 C -0.220 4.220 12 C -0.101 4.101 13 C -0.230 4.230 14 C 0.080 3.920 15 C -0.427 4.427 16 H 0.096 0.904 17 C 0.082 3.918 18 N -0.805 5.805 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.248 1.248 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.513 -9.103 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.291 6.291 4 C -0.006 4.006 5 C 0.028 3.972 6 H 0.093 0.907 7 C -0.229 4.229 8 O -0.203 6.203 9 C -0.016 4.016 10 C -0.192 4.192 11 C -0.240 4.240 12 C -0.120 4.120 13 C -0.250 4.250 14 C 0.076 3.924 15 C -0.455 4.455 16 H 0.114 0.886 17 C -0.136 4.136 18 N -0.429 5.429 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.172 1.172 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.211 -6.494 -8.768 11.133 hybrid contribution 1.014 0.024 0.267 1.049 sum 3.225 -6.470 -8.501 11.159 Atomic orbital electron populations 1.21722 0.93926 1.01757 1.03390 1.22419 0.95661 0.84455 0.99517 1.88020 1.20437 1.25395 1.95242 1.22559 0.82224 0.95619 1.00227 1.22210 0.98135 0.91067 0.85774 0.90694 1.22227 1.02975 1.00968 0.96688 1.86145 1.55759 1.40665 1.37704 1.19112 0.96222 0.89744 0.96478 1.20727 1.00171 0.99326 0.98989 1.20099 1.05151 1.00461 0.98282 1.20256 0.97996 0.98839 0.94868 1.20621 1.03733 0.99148 1.01467 1.17157 0.93160 0.91660 0.90377 1.19369 1.07100 1.28638 0.90369 0.88565 1.26175 0.98163 0.91551 0.97729 1.69733 1.29795 1.35817 1.07589 0.86359 0.83348 0.79035 0.77306 1.19500 1.22010 1.17179 0.91442 0.92068 0.91525 0.94046 0.93523 0.92431 0.92512 0.92491 0.90900 0.91951 0.88085 0.88963 0.89009 0.87541 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.06 0.72 6.66 37.16 0.25 0.97 16 3 O -0.37 -6.23 9.43 -40.08 -0.38 -6.61 16 4 C 0.07 1.08 5.81 37.16 0.22 1.29 16 5 C 0.09 1.50 2.63 -26.73 -0.07 1.43 16 6 H 0.08 1.22 6.32 -51.93 -0.33 0.89 16 7 C -0.17 -2.72 8.98 37.16 0.33 -2.38 16 8 O -0.29 -6.71 9.09 -23.48 -0.21 -6.93 16 9 C 0.03 0.71 6.63 -38.33 -0.25 0.46 16 10 C -0.17 -3.76 8.24 -39.48 -0.33 -4.08 16 11 C -0.22 -4.73 10.04 -39.34 -0.39 -5.12 16 12 C -0.10 -2.28 9.97 -40.00 -0.40 -2.68 16 13 C -0.23 -5.77 7.30 -39.27 -0.29 -6.06 16 14 C 0.08 2.13 5.15 -106.68 -0.55 1.58 16 15 C -0.43 -12.16 9.21 -37.84 -0.35 -12.51 16 16 H 0.10 2.96 7.86 -52.49 -0.41 2.55 16 17 C 0.08 2.24 5.39 -17.33 -0.09 2.14 16 18 N -0.81 -22.08 13.93 55.55 0.77 -21.31 16 19 Si 0.91 21.45 24.60 -169.99 -4.18 17.27 16 20 H -0.27 -6.09 6.43 56.52 0.36 -5.73 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.25 -5.99 7.08 56.52 0.40 -5.59 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.25 7.56 -51.93 -0.39 0.86 16 32 H 0.06 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.10 1.88 5.44 -52.48 -0.29 1.60 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.11 2.65 4.45 -52.49 -0.23 2.42 16 37 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -29.98 302.04 -6.40 -36.39 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.41 Total: 2.97 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -1.54 Total: -26.33 kcal Atomic # 7 Polarization: -22.08 SS G_CDS: 0.77 Total: -21.31 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.59 Total: -13.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.18 Total: 17.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.98 -6.40 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.102 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds