Wall clock time and date at job start Mon Mar 30 2020 18:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46688 * 2 1 4 4 C 1.42900 * 113.99876 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47522 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47411 * 184.99842 * 5 4 3 7 7 C 1.52999 * 109.47139 * 305.00133 * 5 4 3 8 8 O 1.42903 * 109.47062 * 64.99710 * 5 4 3 9 9 C 1.35642 * 116.99800 * 155.06929 * 8 5 4 10 10 C 1.38443 * 120.27072 * 5.44522 * 9 8 5 11 11 C 1.38298 * 120.05360 * 180.02562 * 10 9 8 12 12 C 1.38818 * 120.59458 * 359.97438 * 11 10 9 13 13 C 1.36493 * 120.53836 * 359.97438 * 12 11 10 14 14 C 1.40726 * 119.92358 * 0.27815 * 13 12 11 15 15 C 1.41158 * 120.28728 * 179.72716 * 14 13 12 16 16 H 1.07993 * 120.00214 * 152.37470 * 15 14 13 17 17 C 1.39938 * 119.99633 * 332.37353 * 15 14 13 18 18 N 1.30863 * 119.99887 * 159.67051 * 17 15 14 19 19 Si 1.86803 * 119.99904 * 339.66780 * 17 15 14 20 20 H 1.48497 * 109.47289 * 90.79973 * 19 17 15 21 21 H 1.48504 * 109.46706 * 210.79424 * 19 17 15 22 22 H 1.48495 * 109.47428 * 330.79482 * 19 17 15 23 23 H 1.08999 * 109.47111 * 300.00155 * 1 2 3 24 24 H 1.09001 * 109.47224 * 60.00125 * 1 2 3 25 25 H 1.08994 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47111 * 239.99845 * 2 1 3 27 27 H 1.08996 * 109.47057 * 119.99160 * 2 1 3 28 28 H 1.09008 * 109.47286 * 59.99375 * 4 3 2 29 29 H 1.08998 * 109.47506 * 300.00222 * 4 3 2 30 30 H 1.09000 * 109.46967 * 299.99677 * 7 5 4 31 31 H 1.08998 * 109.47207 * 59.99584 * 7 5 4 32 32 H 1.09004 * 109.47061 * 179.97438 * 7 5 4 33 33 H 1.08004 * 119.97110 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.70337 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.73326 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.03824 * 179.97438 * 13 12 11 37 37 H 0.96995 * 120.00203 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8253 2.9385 -0.0012 6 1 4.9081 3.0255 -0.0912 7 6 3.1570 3.6442 -1.1827 8 8 3.3984 3.5459 1.2199 9 6 4.0762 4.6471 1.6297 10 6 5.0549 5.2040 0.8244 11 6 5.7436 6.3265 1.2469 12 6 5.4632 6.9060 2.4767 13 6 4.5024 6.3776 3.2895 14 6 3.7918 5.2326 2.8840 15 6 2.8006 4.6764 3.7211 16 1 1.9773 4.1256 3.2908 17 6 2.8847 4.8388 5.1085 18 7 1.8166 4.6927 5.8503 19 14 4.5217 5.2639 5.9015 20 1 4.6619 6.7398 5.9870 21 1 4.5765 4.6817 7.2665 22 1 5.6281 4.7083 5.0816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8333 0.9767 -0.8908 29 1 3.8340 0.9766 0.8891 30 1 3.4826 3.1809 -2.1141 31 1 2.0742 3.5571 -1.0927 32 1 3.4377 4.6975 -1.1829 33 1 5.2815 4.7610 -0.1342 34 1 6.5063 6.7560 0.6143 35 1 6.0098 7.7821 2.7930 36 1 4.2912 6.8348 4.2449 37 1 1.8749 4.8048 6.8120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:04 Heat of formation + Delta-G solvation = -89.381649 kcal Electronic energy + Delta-G solvation = -18479.485276 eV Core-core repulsion = 15607.180726 eV Total energy + Delta-G solvation = -2872.304550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83866 -39.12039 -37.89323 -35.49199 -33.68219 -32.30325 -31.43502 -30.50046 -27.41036 -26.84892 -24.04297 -23.66860 -22.46145 -21.56196 -19.42208 -18.84825 -17.57132 -17.26596 -16.75950 -16.56783 -15.85023 -15.80827 -15.52415 -15.24102 -14.53226 -14.38769 -13.96054 -13.74919 -13.63825 -13.34743 -13.21566 -12.91742 -12.72529 -12.51097 -12.31179 -12.17282 -12.07838 -11.97194 -11.53210 -11.44871 -11.38111 -10.88302 -10.52780 -9.55108 -8.90587 -8.86795 -6.34102 0.76399 0.88638 1.25133 1.40786 1.48576 2.13232 2.62025 2.65491 2.77148 3.51348 3.85879 4.04893 4.13371 4.16539 4.27125 4.35741 4.41020 4.42896 4.48872 4.53155 4.65332 4.77378 4.83425 4.86366 4.93805 5.02498 5.10835 5.24375 5.26276 5.31924 5.36221 5.76654 5.79148 6.01465 6.22450 6.30197 6.40501 6.53225 6.82167 7.17250 8.22885 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.007502 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.357865 B = 3731.514325 C = 4858.639617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.070 3.930 5 C 0.071 3.929 6 H 0.094 0.906 7 C -0.162 4.162 8 O -0.323 6.323 9 C 0.020 3.980 10 C -0.173 4.173 11 C -0.194 4.194 12 C -0.114 4.114 13 C -0.235 4.235 14 C 0.045 3.955 15 C -0.468 4.468 16 H 0.045 0.955 17 C 0.043 3.957 18 N -0.853 5.853 19 Si 0.970 3.030 20 H -0.252 1.252 21 H -0.277 1.277 22 H -0.258 1.258 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -6.158 -11.383 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.007 4.007 5 C 0.015 3.985 6 H 0.112 0.888 7 C -0.219 4.219 8 O -0.238 6.238 9 C -0.025 4.025 10 C -0.192 4.192 11 C -0.213 4.213 12 C -0.132 4.132 13 C -0.254 4.254 14 C 0.042 3.958 15 C -0.498 4.498 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.480 5.480 19 Si 0.794 3.206 20 H -0.177 1.177 21 H -0.203 1.203 22 H -0.182 1.182 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.262 -6.140 -11.065 13.705 hybrid contribution 0.146 -0.098 0.669 0.692 sum 5.408 -6.239 -10.395 13.275 Atomic orbital electron populations 1.21759 0.93458 1.03310 1.02149 1.22662 0.96169 0.83072 1.00837 1.87985 1.21352 1.27824 1.95520 1.22669 0.81888 0.94310 1.01803 1.22704 0.99406 0.92265 0.84143 0.88799 1.22153 1.01459 1.00624 0.97702 1.86132 1.56616 1.40564 1.40506 1.19374 0.96631 0.90265 0.96231 1.21147 0.98734 0.99332 0.99960 1.20735 1.04057 0.98821 0.97715 1.20682 0.97563 1.00006 0.94982 1.20782 1.04119 0.98560 1.01955 1.17419 0.93807 0.92830 0.91731 1.19174 1.07634 1.31233 0.91766 0.93677 1.26874 1.01216 0.91438 0.97533 1.69769 1.31429 1.38524 1.08240 0.85478 0.78723 0.79668 0.76766 1.17720 1.20310 1.18218 0.94078 0.91878 0.88566 0.90945 0.93781 0.87969 0.93584 0.88526 0.93129 0.92758 0.84475 0.84556 0.85416 0.87936 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 10.28 71.98 0.74 -2.73 16 2 C 0.05 1.22 6.66 71.98 0.48 1.70 16 3 O -0.41 -13.67 9.43 -144.34 -1.36 -15.04 16 4 C 0.07 2.04 5.81 71.98 0.42 2.45 16 5 C 0.07 2.40 2.63 30.59 0.08 2.48 16 6 H 0.09 2.76 6.32 -2.39 -0.02 2.74 16 7 C -0.16 -4.83 8.98 71.98 0.65 -4.18 16 8 O -0.32 -15.45 9.09 -84.92 -0.77 -16.22 16 9 C 0.02 0.97 6.63 23.08 0.15 1.13 16 10 C -0.17 -6.95 8.24 22.33 0.18 -6.76 16 11 C -0.19 -7.37 10.04 22.42 0.23 -7.14 16 12 C -0.11 -4.73 9.97 22.00 0.22 -4.51 16 13 C -0.23 -11.58 7.30 22.47 0.16 -11.42 16 14 C 0.04 2.46 5.15 -21.20 -0.11 2.35 16 15 C -0.47 -28.66 9.21 23.40 0.22 -28.45 16 16 H 0.04 3.09 7.86 -2.91 -0.02 3.06 16 17 C 0.04 2.44 5.39 85.25 0.46 2.90 16 18 N -0.85 -49.70 13.93 21.83 0.30 -49.40 16 19 Si 0.97 45.05 24.60 68.60 1.69 46.74 16 20 H -0.25 -10.87 6.43 99.48 0.64 -10.23 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.26 -12.22 7.08 99.48 0.70 -11.52 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.72 7.56 -2.39 -0.02 1.71 16 32 H 0.05 1.68 6.92 -2.38 -0.02 1.66 16 33 H 0.14 4.46 5.44 -2.91 -0.02 4.44 16 34 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.10 5.05 4.45 -2.91 -0.01 5.03 16 37 H 0.29 15.21 8.30 -92.71 -0.77 14.44 16 Total: -1.00 -70.30 302.04 4.71 -65.59 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.98 Total: 20.51 kcal Atomic # 6 Polarization: -56.06 SS G_CDS: 3.88 Total: -52.19 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.30 Total: -49.40 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.13 Total: -31.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.69 Total: 46.74 kcal Total: -70.30 4.71 -65.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.793 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds