Wall clock time and date at job start Mon Mar 30 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47369 * 2 1 4 4 C 1.42895 * 113.99864 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47779 * 30.00421 * 4 3 2 6 6 C 1.53001 * 109.47173 * 270.00060 * 4 3 2 7 7 C 1.53003 * 109.46885 * 150.00651 * 4 3 2 8 8 O 1.42894 * 109.47749 * 64.99641 * 7 4 3 9 9 C 1.35638 * 117.00171 * 180.02562 * 8 7 4 10 10 C 1.38441 * 120.26710 * 0.02562 * 9 8 7 11 11 C 1.38305 * 120.05211 * 180.29327 * 10 9 8 12 12 C 1.38830 * 120.58950 * 359.44756 * 11 10 9 13 13 C 1.36488 * 120.53770 * 0.55173 * 12 11 10 14 14 C 1.40730 * 119.92787 * 359.72986 * 13 12 11 15 15 C 1.41146 * 120.28514 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99575 * 154.63679 * 15 14 13 17 17 C 1.39931 * 120.00446 * 334.64218 * 15 14 13 18 18 N 1.30862 * 120.00109 * 342.92949 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 162.93052 * 17 15 14 20 20 H 1.48504 * 109.47358 * 89.99958 * 19 17 15 21 21 H 1.48505 * 109.47534 * 209.99766 * 19 17 15 22 22 H 1.48501 * 109.47393 * 330.00079 * 19 17 15 23 23 H 1.08997 * 109.47687 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00424 * 1 2 3 25 25 H 1.09008 * 109.46964 * 59.99832 * 1 2 3 26 26 H 1.09005 * 109.47245 * 240.00169 * 2 1 3 27 27 H 1.08995 * 109.47208 * 120.00321 * 2 1 3 28 28 H 1.09001 * 109.47351 * 300.00016 * 6 4 3 29 29 H 1.08993 * 109.47105 * 59.99895 * 6 4 3 30 30 H 1.09006 * 109.47252 * 180.02562 * 6 4 3 31 31 H 1.09003 * 109.46482 * 304.99530 * 7 4 3 32 32 H 1.09001 * 109.46940 * 185.00238 * 7 4 3 33 33 H 1.08003 * 119.97759 * 0.02562 * 10 9 8 34 34 H 1.08001 * 119.70996 * 179.72634 * 11 10 9 35 35 H 1.07999 * 119.73061 * 180.27884 * 12 11 10 36 36 H 1.07998 * 120.03579 * 179.74464 * 13 12 11 37 37 H 0.97003 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6016 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8410 2.7456 -0.7206 8 8 3.3720 3.8761 0.0170 9 6 3.6532 5.1022 -0.4902 10 6 4.3643 5.2221 -1.6720 11 6 4.6539 6.4746 -2.1820 12 6 4.2276 7.6208 -1.5249 13 6 3.5250 7.5307 -0.3582 14 6 3.2231 6.2675 0.1837 15 6 2.4965 6.1655 1.3895 16 1 1.9197 5.2766 1.5988 17 6 2.5232 7.2159 2.3136 18 7 3.4563 8.1302 2.2381 19 14 1.2269 7.3130 3.6550 20 1 1.6994 6.5756 4.8544 21 1 0.9879 8.7349 4.0106 22 1 -0.0372 6.7057 3.1668 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5061 2.3591 1.9569 29 1 3.6465 0.5847 1.9571 30 1 5.0253 1.5869 1.4438 31 1 3.4045 2.7569 -1.7193 32 1 4.9274 2.7878 -0.7984 33 1 4.6969 4.3369 -2.1938 34 1 5.2128 6.5618 -3.1020 35 1 4.4577 8.5919 -1.9379 36 1 3.2009 8.4277 0.1483 37 1 3.4751 8.8582 2.8789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:11 Heat of formation + Delta-G solvation = -75.146255 kcal Electronic energy + Delta-G solvation = -18356.084750 eV Core-core repulsion = 15484.397493 eV Total energy + Delta-G solvation = -2871.687257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.92093 -37.86906 -35.94180 -33.51811 -32.51212 -30.15085 -29.58857 -28.42961 -26.36383 -24.99719 -22.77175 -21.71819 -20.61223 -20.02064 -17.42926 -16.94506 -16.14520 -15.59102 -15.16232 -14.96521 -14.44389 -14.09039 -13.82380 -13.17365 -12.89279 -12.70216 -12.48170 -12.37891 -11.96303 -11.72128 -11.58399 -11.28561 -11.12002 -11.06832 -10.91454 -10.69057 -10.51166 -10.39769 -9.81147 -9.65460 -9.45504 -9.23943 -9.07180 -7.39844 -6.92256 -6.60996 -4.14684 2.83049 3.07885 3.14702 3.20075 3.28821 3.81596 4.04237 4.32294 4.72770 5.00570 5.05599 5.27974 5.32816 5.37311 5.48641 5.58720 5.72183 5.82147 5.92852 5.96129 6.04739 6.09370 6.16657 6.18945 6.37833 6.54055 6.64876 7.02813 7.19748 7.39149 7.41426 7.48594 7.82449 7.86312 8.14964 8.31533 8.51897 8.80850 8.95290 9.18442 10.30690 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.007481 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.944354 B = 3742.159487 C = 4952.154381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.368 6.368 4 C 0.093 3.907 5 H 0.067 0.933 6 C -0.171 4.171 7 C 0.067 3.933 8 O -0.294 6.294 9 C 0.013 3.987 10 C -0.180 4.180 11 C -0.216 4.216 12 C -0.128 4.128 13 C -0.147 4.147 14 C 0.098 3.902 15 C -0.443 4.443 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.800 5.800 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.261 1.261 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -11.544 -2.190 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.288 6.288 4 C 0.036 3.964 5 H 0.085 0.915 6 C -0.229 4.229 7 C -0.010 4.010 8 O -0.208 6.208 9 C -0.031 4.031 10 C -0.200 4.200 11 C -0.235 4.235 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.096 3.904 15 C -0.473 4.473 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.184 1.184 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.141 0.859 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.371 -11.218 -1.878 11.457 hybrid contribution -0.042 -0.193 0.346 0.399 sum -1.413 -11.412 -1.532 11.600 Atomic orbital electron populations 1.21724 0.93963 1.01675 1.03446 1.22472 0.95658 0.84707 0.99401 1.88123 1.20548 1.25119 1.94982 1.22157 0.81731 0.95950 0.96585 0.91524 1.22188 1.01205 1.02899 0.96600 1.22563 0.97864 0.85535 0.95029 1.86010 1.75093 1.11387 1.48318 1.19232 1.03411 0.84223 0.96227 1.20598 1.05048 0.96983 0.97322 1.20110 1.09489 0.92350 1.01577 1.20368 1.01197 0.96173 0.96900 1.20859 1.03006 0.97467 0.95309 1.17054 0.92278 0.88274 0.92837 1.19428 1.25132 1.02037 1.00702 0.89910 1.25883 0.95139 0.94609 0.98696 1.69843 1.27957 1.11141 1.33710 0.86342 0.81965 0.78021 0.80576 1.19613 1.20263 1.18443 0.91564 0.91682 0.91842 0.93913 0.93753 0.89923 0.93218 0.91901 0.92912 0.92189 0.88950 0.89511 0.89458 0.85947 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.05 0.67 6.47 37.16 0.24 0.91 16 3 O -0.37 -6.22 9.95 -40.08 -0.40 -6.62 16 4 C 0.09 1.44 3.13 -26.73 -0.08 1.36 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 6 C -0.17 -2.60 9.33 37.16 0.35 -2.25 16 7 C 0.07 1.22 4.61 37.16 0.17 1.39 16 8 O -0.29 -6.97 8.52 -23.46 -0.20 -7.17 16 9 C 0.01 0.35 6.72 -38.33 -0.26 0.09 16 10 C -0.18 -4.23 9.04 -39.48 -0.36 -4.59 16 11 C -0.22 -5.02 10.04 -39.34 -0.39 -5.41 16 12 C -0.13 -3.12 9.97 -39.99 -0.40 -3.51 16 13 C -0.15 -3.95 8.64 -39.27 -0.34 -4.28 16 14 C 0.10 2.75 5.58 -106.68 -0.59 2.15 16 15 C -0.44 -12.39 8.71 -37.85 -0.33 -12.72 16 16 H 0.08 2.33 7.66 -52.48 -0.40 1.92 16 17 C 0.07 1.91 5.15 -17.33 -0.09 1.82 16 18 N -0.80 -21.30 10.97 55.55 0.61 -20.69 16 19 Si 0.91 19.58 29.59 -169.99 -5.03 14.55 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 28 H 0.08 1.53 7.56 -51.93 -0.39 1.13 16 29 H 0.05 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.94 7.66 -51.93 -0.40 0.54 16 32 H 0.06 1.00 7.67 -51.93 -0.40 0.60 16 33 H 0.09 1.88 6.31 -52.48 -0.33 1.55 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.36 6.19 -52.49 -0.32 3.03 16 37 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -29.98 309.67 -7.62 -37.59 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.56 Total: 4.02 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -1.70 Total: -26.35 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.61 Total: -20.69 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.60 Total: -13.79 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.98 -7.62 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.552 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds