Wall clock time and date at job start Mon Mar 30 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47369 * 2 1 4 4 C 1.42895 * 113.99864 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47779 * 30.00421 * 4 3 2 6 6 C 1.53001 * 109.47173 * 270.00060 * 4 3 2 7 7 C 1.53003 * 109.46885 * 150.00651 * 4 3 2 8 8 O 1.42894 * 109.47749 * 64.99641 * 7 4 3 9 9 C 1.35638 * 117.00171 * 180.02562 * 8 7 4 10 10 C 1.38441 * 120.26710 * 0.02562 * 9 8 7 11 11 C 1.38305 * 120.05211 * 180.29327 * 10 9 8 12 12 C 1.38830 * 120.58950 * 359.44756 * 11 10 9 13 13 C 1.36488 * 120.53770 * 0.55173 * 12 11 10 14 14 C 1.40730 * 119.92787 * 359.72986 * 13 12 11 15 15 C 1.41146 * 120.28514 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99575 * 154.63679 * 15 14 13 17 17 C 1.39931 * 120.00446 * 334.64218 * 15 14 13 18 18 N 1.30862 * 120.00109 * 342.92949 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 162.93052 * 17 15 14 20 20 H 1.48504 * 109.47358 * 89.99958 * 19 17 15 21 21 H 1.48505 * 109.47534 * 209.99766 * 19 17 15 22 22 H 1.48501 * 109.47393 * 330.00079 * 19 17 15 23 23 H 1.08997 * 109.47687 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00424 * 1 2 3 25 25 H 1.09008 * 109.46964 * 59.99832 * 1 2 3 26 26 H 1.09005 * 109.47245 * 240.00169 * 2 1 3 27 27 H 1.08995 * 109.47208 * 120.00321 * 2 1 3 28 28 H 1.09001 * 109.47351 * 300.00016 * 6 4 3 29 29 H 1.08993 * 109.47105 * 59.99895 * 6 4 3 30 30 H 1.09006 * 109.47252 * 180.02562 * 6 4 3 31 31 H 1.09003 * 109.46482 * 304.99530 * 7 4 3 32 32 H 1.09001 * 109.46940 * 185.00238 * 7 4 3 33 33 H 1.08003 * 119.97759 * 0.02562 * 10 9 8 34 34 H 1.08001 * 119.70996 * 179.72634 * 11 10 9 35 35 H 1.07999 * 119.73061 * 180.27884 * 12 11 10 36 36 H 1.07998 * 120.03579 * 179.74464 * 13 12 11 37 37 H 0.97003 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6016 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8410 2.7456 -0.7206 8 8 3.3720 3.8761 0.0170 9 6 3.6532 5.1022 -0.4902 10 6 4.3643 5.2221 -1.6720 11 6 4.6539 6.4746 -2.1820 12 6 4.2276 7.6208 -1.5249 13 6 3.5250 7.5307 -0.3582 14 6 3.2231 6.2675 0.1837 15 6 2.4965 6.1655 1.3895 16 1 1.9197 5.2766 1.5988 17 6 2.5232 7.2159 2.3136 18 7 3.4563 8.1302 2.2381 19 14 1.2269 7.3130 3.6550 20 1 1.6994 6.5756 4.8544 21 1 0.9879 8.7349 4.0106 22 1 -0.0372 6.7057 3.1668 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5061 2.3591 1.9569 29 1 3.6465 0.5847 1.9571 30 1 5.0253 1.5869 1.4438 31 1 3.4045 2.7569 -1.7193 32 1 4.9274 2.7878 -0.7984 33 1 4.6969 4.3369 -2.1938 34 1 5.2128 6.5618 -3.1020 35 1 4.4577 8.5919 -1.9379 36 1 3.2009 8.4277 0.1483 37 1 3.4751 8.8582 2.8789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:11 Heat of formation + Delta-G solvation = -92.215409 kcal Electronic energy + Delta-G solvation = -18356.824924 eV Core-core repulsion = 15484.397493 eV Total energy + Delta-G solvation = -2872.427431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57176 -39.25353 -37.69019 -35.47311 -33.69937 -31.65395 -31.12191 -30.28299 -27.79345 -26.95710 -23.76814 -23.27135 -22.48912 -21.59728 -19.33770 -18.52315 -17.64617 -17.04452 -16.60677 -16.42096 -15.98969 -15.90063 -15.41240 -14.68777 -14.39370 -14.23382 -14.01497 -13.59990 -13.40518 -13.30405 -12.96507 -12.83238 -12.73367 -12.64598 -12.26880 -12.19700 -12.07794 -11.73253 -11.55878 -11.49203 -11.22709 -11.02095 -10.45320 -9.37038 -8.84958 -8.54330 -6.19668 0.94995 1.12937 1.36274 1.47219 1.53149 2.23531 2.71941 2.75633 2.79835 3.71928 3.84214 4.02522 4.18834 4.22441 4.33534 4.39591 4.43447 4.50779 4.55096 4.60840 4.69716 4.74384 4.89160 4.98142 5.04719 5.11395 5.22903 5.27478 5.37872 5.46639 5.49684 5.88905 5.91752 6.18153 6.34244 6.38608 6.56789 6.83509 6.94525 7.28918 8.38587 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.007481 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.944354 B = 3742.159487 C = 4952.154381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.407 6.407 4 C 0.095 3.905 5 H 0.110 0.890 6 C -0.168 4.168 7 C 0.055 3.945 8 O -0.318 6.318 9 C 0.002 3.998 10 C -0.184 4.184 11 C -0.206 4.206 12 C -0.137 4.137 13 C -0.167 4.167 14 C 0.057 3.943 15 C -0.481 4.481 16 H 0.063 0.937 17 C 0.034 3.966 18 N -0.830 5.830 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.261 1.261 22 H -0.264 1.264 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -13.145 -3.033 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.327 6.327 4 C 0.038 3.962 5 H 0.128 0.872 6 C -0.225 4.225 7 C -0.021 4.021 8 O -0.233 6.233 9 C -0.042 4.042 10 C -0.203 4.203 11 C -0.225 4.225 12 C -0.156 4.156 13 C -0.187 4.187 14 C 0.055 3.945 15 C -0.511 4.511 16 H 0.082 0.918 17 C -0.179 4.179 18 N -0.457 5.457 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.185 1.185 22 H -0.189 1.189 23 H 0.115 0.885 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.829 -12.832 -2.737 13.147 hybrid contribution -0.137 0.188 0.468 0.523 sum -0.966 -12.644 -2.268 12.883 Atomic orbital electron populations 1.21770 0.93563 1.03303 1.02164 1.22753 0.96116 0.83013 1.01098 1.88089 1.21336 1.28085 1.95189 1.22257 0.81659 0.95748 0.96581 0.87194 1.22142 1.01689 1.02065 0.96606 1.22985 0.98927 0.84867 0.95279 1.85992 1.75572 1.11921 1.49775 1.19454 1.03222 0.84756 0.96800 1.20985 1.04101 0.98605 0.96573 1.20597 1.08000 0.91702 1.02216 1.20679 1.00618 0.98115 0.96163 1.20844 1.04535 0.96720 0.96598 1.17457 0.93567 0.89779 0.93727 1.19465 1.26835 1.02614 1.02175 0.91832 1.26643 0.96838 0.93789 1.00623 1.69876 1.29128 1.11759 1.34924 0.85308 0.78712 0.78767 0.77535 1.18838 1.18461 1.18852 0.88458 0.93268 0.92828 0.91659 0.92383 0.94335 0.90856 0.90678 0.92520 0.90485 0.85542 0.85737 0.86896 0.87576 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.05 1.04 6.47 71.98 0.47 1.51 16 3 O -0.41 -13.39 9.95 -144.34 -1.44 -14.83 16 4 C 0.09 2.75 3.13 30.60 0.10 2.85 16 5 H 0.11 2.24 7.79 -2.39 -0.02 2.22 16 6 C -0.17 -4.93 9.33 71.98 0.67 -4.26 16 7 C 0.06 1.94 4.61 71.98 0.33 2.27 16 8 O -0.32 -15.42 8.52 -84.87 -0.72 -16.14 16 9 C 0.00 0.13 6.72 23.08 0.16 0.28 16 10 C -0.18 -8.34 9.04 22.33 0.20 -8.13 16 11 C -0.21 -9.11 10.04 22.43 0.23 -8.88 16 12 C -0.14 -6.60 9.97 22.00 0.22 -6.38 16 13 C -0.17 -9.25 8.64 22.47 0.19 -9.06 16 14 C 0.06 3.32 5.58 -21.20 -0.12 3.20 16 15 C -0.48 -28.34 8.71 23.39 0.20 -28.13 16 16 H 0.06 3.83 7.66 -2.91 -0.02 3.81 16 17 C 0.03 1.86 5.15 85.25 0.44 2.30 16 18 N -0.83 -45.60 10.97 21.83 0.24 -45.37 16 19 Si 0.98 41.36 29.59 68.60 2.03 43.39 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.19 16 26 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 27 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 28 H 0.04 1.46 7.56 -2.39 -0.02 1.44 16 29 H 0.07 1.76 7.87 -2.39 -0.02 1.74 16 30 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.06 1.93 7.66 -2.39 -0.02 1.91 16 32 H 0.08 2.41 7.67 -2.39 -0.02 2.39 16 33 H 0.13 4.76 6.31 -2.91 -0.02 4.75 16 34 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 6.09 6.19 -2.91 -0.02 6.07 16 37 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 Total: -1.00 -67.98 309.67 4.97 -63.00 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.04 Total: 24.80 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 3.83 Total: -54.86 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.24 Total: -45.37 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -2.16 Total: -30.97 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -67.98 4.97 -63.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.212 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds