Wall clock time and date at job start Mon Mar 30 2020 18:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47172 * 2 1 4 4 C 1.42900 * 114.00280 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46825 * 330.00316 * 4 3 2 6 6 C 1.53000 * 109.47033 * 89.99887 * 4 3 2 7 7 C 1.52996 * 109.46920 * 210.00185 * 4 3 2 8 8 O 1.42896 * 109.47131 * 294.99487 * 7 4 3 9 9 C 1.35642 * 117.00365 * 180.02562 * 8 7 4 10 10 C 1.38449 * 120.26131 * 0.28192 * 9 8 7 11 11 C 1.38309 * 120.04764 * 180.25632 * 10 9 8 12 12 C 1.38823 * 120.59178 * 359.74123 * 11 10 9 13 13 C 1.36486 * 120.54052 * 359.97438 * 12 11 10 14 14 C 1.40723 * 119.92690 * 0.02562 * 13 12 11 15 15 C 1.41149 * 120.28821 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00238 * 205.26740 * 15 14 13 17 17 C 1.39941 * 120.00200 * 25.26787 * 15 14 13 18 18 N 1.30868 * 119.99587 * 26.52888 * 17 15 14 19 19 Si 1.86799 * 120.00240 * 206.52510 * 17 15 14 20 20 H 1.48500 * 109.47092 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47002 * 300.00053 * 19 17 15 22 22 H 1.48501 * 109.46882 * 59.99808 * 19 17 15 23 23 H 1.08999 * 109.46957 * 299.99702 * 1 2 3 24 24 H 1.08997 * 109.46876 * 60.00400 * 1 2 3 25 25 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47251 * 239.99872 * 2 1 3 27 27 H 1.09006 * 109.47408 * 119.99793 * 2 1 3 28 28 H 1.09007 * 109.46691 * 60.00100 * 6 4 3 29 29 H 1.08996 * 109.47012 * 179.97438 * 6 4 3 30 30 H 1.08998 * 109.47032 * 300.00321 * 6 4 3 31 31 H 1.09007 * 109.46852 * 175.00416 * 7 4 3 32 32 H 1.08992 * 109.47653 * 55.00152 * 7 4 3 33 33 H 1.08001 * 119.97891 * 359.97153 * 10 9 8 34 34 H 1.07997 * 119.70209 * 179.76369 * 11 10 9 35 35 H 1.07998 * 119.73084 * 179.97438 * 12 11 10 36 36 H 1.07996 * 120.03916 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99956 * 5.88154 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5002 -1.4417 7 6 3.8403 2.7459 0.7218 8 8 3.3719 3.8760 -0.0165 9 6 3.6535 5.1024 0.4900 10 6 4.3698 5.2228 1.6687 11 6 4.6499 6.4753 2.1840 12 6 4.2233 7.6213 1.5267 13 6 3.5205 7.5308 0.3603 14 6 3.2232 6.2676 -0.1840 15 6 2.4963 6.1651 -1.3897 16 1 1.9241 5.2738 -1.6013 17 6 2.5171 7.2183 -2.3109 18 7 3.5422 8.0308 -2.3528 19 14 1.0818 7.4643 -3.4809 20 1 1.3469 8.6394 -4.3493 21 1 0.9175 6.2532 -4.3242 22 1 -0.1597 7.6956 -2.6995 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.5075 2.3587 -1.9558 29 1 5.0264 1.5868 -1.4413 30 1 3.6482 0.5843 -1.9555 31 1 4.9267 2.7882 0.8004 32 1 3.4030 2.7575 1.7202 33 1 4.7062 4.3379 2.1885 34 1 5.2058 6.5626 3.1058 35 1 4.4494 8.5923 1.9418 36 1 3.1929 8.4276 -0.1445 37 1 4.3238 7.8540 -1.8063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:14 Heat of formation + Delta-G solvation = -81.383877 kcal Electronic energy + Delta-G solvation = -18391.850076 eV Core-core repulsion = 15519.892335 eV Total energy + Delta-G solvation = -2871.957741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.01477 -37.96687 -36.13178 -33.73877 -32.56177 -30.17010 -29.36677 -28.57207 -26.37855 -24.87901 -22.80053 -21.75302 -20.80980 -20.08597 -18.00489 -17.05479 -16.21339 -15.60894 -15.14494 -14.70291 -14.57159 -14.07420 -13.93335 -13.24056 -13.03632 -12.80383 -12.48031 -12.42966 -12.06226 -11.83147 -11.67890 -11.39403 -11.20584 -10.96283 -10.90691 -10.59542 -10.45174 -10.32806 -9.93528 -9.87371 -9.44324 -9.28355 -8.86496 -7.61611 -7.25032 -6.91670 -4.22767 2.78062 2.91683 3.23318 3.34142 3.44334 3.77538 4.10810 4.24155 4.64346 4.96075 5.02741 5.23267 5.28970 5.34630 5.42449 5.52400 5.57208 5.74844 5.90002 5.90746 5.99473 6.01913 6.09641 6.15224 6.24665 6.41263 6.59779 6.88440 7.09194 7.23425 7.41624 7.56910 7.70245 7.87391 8.01477 8.18597 8.30796 8.47757 8.94374 9.05232 10.14502 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.007446 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.335168 B = 3759.549324 C = 4933.681343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.369 6.369 4 C 0.094 3.906 5 H 0.068 0.932 6 C -0.171 4.171 7 C 0.067 3.933 8 O -0.293 6.293 9 C 0.011 3.989 10 C -0.170 4.170 11 C -0.231 4.231 12 C -0.106 4.106 13 C -0.207 4.207 14 C 0.087 3.913 15 C -0.504 4.504 16 H 0.081 0.919 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 1.064 2.936 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -12.101 2.374 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.288 6.288 4 C 0.036 3.964 5 H 0.085 0.915 6 C -0.229 4.229 7 C -0.010 4.010 8 O -0.207 6.207 9 C -0.034 4.034 10 C -0.189 4.189 11 C -0.251 4.251 12 C -0.125 4.125 13 C -0.226 4.226 14 C 0.084 3.916 15 C -0.532 4.532 16 H 0.099 0.901 17 C -0.183 4.183 18 N -0.423 5.423 19 Si 0.887 3.113 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.106 -10.950 0.991 11.195 hybrid contribution 1.081 -1.348 1.629 2.375 sum -1.025 -12.298 2.620 12.616 Atomic orbital electron populations 1.21725 0.93914 1.01714 1.03451 1.22480 0.95699 0.84642 0.99422 1.88122 1.20492 1.25199 1.94983 1.22149 0.81797 0.95874 0.96583 0.91460 1.22186 1.01158 1.02939 0.96593 1.22576 0.97851 0.85534 0.95056 1.86014 1.75068 1.11336 1.48284 1.19131 1.03470 0.84266 0.96500 1.20634 1.04240 0.97075 0.96995 1.20042 1.10853 0.92212 1.01956 1.20277 0.99721 0.96347 0.96143 1.20653 1.07319 0.96583 0.98091 1.17094 0.92365 0.88511 0.93611 1.20419 1.26276 1.04534 1.01948 0.90058 1.26997 1.01069 0.91582 0.98656 1.70467 1.03931 1.34801 1.33088 0.83668 0.74671 0.77268 0.75667 1.20000 1.20130 1.20014 0.91852 0.91656 0.91518 0.93718 0.93901 0.89988 0.91928 0.93119 0.92201 0.92886 0.88826 0.89343 0.89305 0.87246 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.05 0.67 6.47 37.16 0.24 0.91 16 3 O -0.37 -6.23 9.95 -40.09 -0.40 -6.63 16 4 C 0.09 1.44 3.13 -26.73 -0.08 1.36 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 6 C -0.17 -2.59 9.33 37.16 0.35 -2.25 16 7 C 0.07 1.21 4.62 37.16 0.17 1.38 16 8 O -0.29 -6.96 8.52 -23.48 -0.20 -7.16 16 9 C 0.01 0.27 6.72 -38.33 -0.26 0.01 16 10 C -0.17 -3.97 9.04 -39.48 -0.36 -4.33 16 11 C -0.23 -5.34 10.04 -39.34 -0.39 -5.73 16 12 C -0.11 -2.56 9.97 -40.00 -0.40 -2.96 16 13 C -0.21 -5.48 7.93 -39.28 -0.31 -5.79 16 14 C 0.09 2.42 5.30 -106.68 -0.57 1.86 16 15 C -0.50 -14.07 8.64 -37.84 -0.33 -14.40 16 16 H 0.08 2.31 7.72 -52.48 -0.41 1.90 16 17 C 0.04 1.00 4.91 -17.32 -0.09 0.92 16 18 N -0.80 -21.79 12.32 55.55 0.68 -21.10 16 19 Si 1.06 22.56 30.01 -169.99 -5.10 17.46 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.50 7.87 -51.93 -0.41 0.09 16 27 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.08 1.52 7.56 -51.92 -0.39 1.13 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 31 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 32 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.09 1.90 6.31 -52.49 -0.33 1.57 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.11 2.96 6.52 -52.49 -0.34 2.61 16 37 H 0.30 8.34 6.78 -40.82 -0.28 8.06 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -30.05 309.01 -7.52 -37.57 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.52 Total: 5.52 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: -1.64 Total: -30.31 kcal Atomic # 7 Polarization: -21.79 SS G_CDS: 0.68 Total: -21.10 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.60 Total: -13.79 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.10 Total: 17.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.05 -7.52 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.815 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds