Wall clock time and date at job start Mon Mar 30 2020 18:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47172 * 2 1 4 4 C 1.42900 * 114.00280 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46825 * 330.00316 * 4 3 2 6 6 C 1.53000 * 109.47033 * 89.99887 * 4 3 2 7 7 C 1.52996 * 109.46920 * 210.00185 * 4 3 2 8 8 O 1.42896 * 109.47131 * 294.99487 * 7 4 3 9 9 C 1.35642 * 117.00365 * 180.02562 * 8 7 4 10 10 C 1.38449 * 120.26131 * 0.28192 * 9 8 7 11 11 C 1.38309 * 120.04764 * 180.25632 * 10 9 8 12 12 C 1.38823 * 120.59178 * 359.74123 * 11 10 9 13 13 C 1.36486 * 120.54052 * 359.97438 * 12 11 10 14 14 C 1.40723 * 119.92690 * 0.02562 * 13 12 11 15 15 C 1.41149 * 120.28821 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00238 * 205.26740 * 15 14 13 17 17 C 1.39941 * 120.00200 * 25.26787 * 15 14 13 18 18 N 1.30868 * 119.99587 * 26.52888 * 17 15 14 19 19 Si 1.86799 * 120.00240 * 206.52510 * 17 15 14 20 20 H 1.48500 * 109.47092 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47002 * 300.00053 * 19 17 15 22 22 H 1.48501 * 109.46882 * 59.99808 * 19 17 15 23 23 H 1.08999 * 109.46957 * 299.99702 * 1 2 3 24 24 H 1.08997 * 109.46876 * 60.00400 * 1 2 3 25 25 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47251 * 239.99872 * 2 1 3 27 27 H 1.09006 * 109.47408 * 119.99793 * 2 1 3 28 28 H 1.09007 * 109.46691 * 60.00100 * 6 4 3 29 29 H 1.08996 * 109.47012 * 179.97438 * 6 4 3 30 30 H 1.08998 * 109.47032 * 300.00321 * 6 4 3 31 31 H 1.09007 * 109.46852 * 175.00416 * 7 4 3 32 32 H 1.08992 * 109.47653 * 55.00152 * 7 4 3 33 33 H 1.08001 * 119.97891 * 359.97153 * 10 9 8 34 34 H 1.07997 * 119.70209 * 179.76369 * 11 10 9 35 35 H 1.07998 * 119.73084 * 179.97438 * 12 11 10 36 36 H 1.07996 * 120.03916 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99956 * 5.88154 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5002 -1.4417 7 6 3.8403 2.7459 0.7218 8 8 3.3719 3.8760 -0.0165 9 6 3.6535 5.1024 0.4900 10 6 4.3698 5.2228 1.6687 11 6 4.6499 6.4753 2.1840 12 6 4.2233 7.6213 1.5267 13 6 3.5205 7.5308 0.3603 14 6 3.2232 6.2676 -0.1840 15 6 2.4963 6.1651 -1.3897 16 1 1.9241 5.2738 -1.6013 17 6 2.5171 7.2183 -2.3109 18 7 3.5422 8.0308 -2.3528 19 14 1.0818 7.4643 -3.4809 20 1 1.3469 8.6394 -4.3493 21 1 0.9175 6.2532 -4.3242 22 1 -0.1597 7.6956 -2.6995 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.5075 2.3587 -1.9558 29 1 5.0264 1.5868 -1.4413 30 1 3.6482 0.5843 -1.9555 31 1 4.9267 2.7882 0.8004 32 1 3.4030 2.7575 1.7202 33 1 4.7062 4.3379 2.1885 34 1 5.2058 6.5626 3.1058 35 1 4.4494 8.5923 1.9418 36 1 3.1929 8.4276 -0.1445 37 1 4.3238 7.8540 -1.8063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:14 Heat of formation + Delta-G solvation = -98.540188 kcal Electronic energy + Delta-G solvation = -18392.594029 eV Core-core repulsion = 15519.892335 eV Total energy + Delta-G solvation = -2872.701694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69919 -39.34913 -37.87718 -35.69679 -33.74908 -31.46966 -31.10792 -30.42073 -27.79305 -26.87548 -23.79249 -23.29795 -22.71455 -21.65595 -19.95388 -18.60824 -17.65640 -16.85357 -16.62408 -16.41732 -16.20668 -15.68421 -15.57252 -14.83513 -14.61319 -14.21919 -14.06388 -13.77276 -13.56317 -13.37909 -13.00077 -12.82679 -12.70257 -12.40956 -12.28413 -12.15914 -11.95332 -11.80371 -11.70498 -11.59024 -11.24898 -10.82948 -10.49064 -9.59339 -9.28726 -8.86182 -6.30459 0.84471 0.97022 1.48553 1.62312 1.79106 2.33749 2.64467 2.68352 2.73207 3.52851 3.78590 3.97376 4.13267 4.18588 4.26883 4.30186 4.37392 4.42044 4.48354 4.53007 4.62232 4.67609 4.85208 4.93052 4.95025 5.02399 5.15764 5.25314 5.30409 5.34586 5.53992 5.77208 5.83343 5.99997 6.16391 6.33071 6.38242 6.54308 6.92049 7.16178 8.06871 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.007446 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.335168 B = 3759.549324 C = 4933.681343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.407 6.407 4 C 0.095 3.905 5 H 0.112 0.888 6 C -0.167 4.167 7 C 0.055 3.945 8 O -0.318 6.318 9 C 0.000 4.000 10 C -0.174 4.174 11 C -0.215 4.215 12 C -0.117 4.117 13 C -0.220 4.220 14 C 0.049 3.951 15 C -0.541 4.541 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.818 5.818 19 Si 1.112 2.888 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.265 1.265 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -13.847 3.699 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.328 6.328 4 C 0.038 3.962 5 H 0.129 0.871 6 C -0.225 4.225 7 C -0.021 4.021 8 O -0.232 6.232 9 C -0.045 4.045 10 C -0.193 4.193 11 C -0.234 4.234 12 C -0.136 4.136 13 C -0.239 4.239 14 C 0.046 3.954 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.211 4.211 18 N -0.442 5.442 19 Si 0.929 3.071 20 H -0.190 1.190 21 H -0.187 1.187 22 H -0.190 1.190 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.619 -12.719 2.339 13.033 hybrid contribution 1.026 -0.952 1.421 1.994 sum -0.594 -13.671 3.760 14.191 Atomic orbital electron populations 1.21773 0.93506 1.03351 1.02167 1.22763 0.96164 0.82935 1.01127 1.88088 1.21295 1.28187 1.95191 1.22256 0.81720 0.95697 0.96569 0.87082 1.22139 1.01659 1.02057 0.96609 1.23008 0.98970 0.84828 0.95283 1.86000 1.75556 1.11902 1.49790 1.19374 1.03242 0.84789 0.97065 1.21041 1.03260 0.98779 0.96217 1.20576 1.08840 0.91533 1.02478 1.20616 0.99190 0.98387 0.95372 1.20657 1.08386 0.95727 0.99175 1.17490 0.93445 0.90063 0.94378 1.20424 1.28211 1.04891 1.03415 0.92147 1.28334 1.02536 0.90734 0.99484 1.70584 1.04031 1.35789 1.33788 0.83082 0.71866 0.77954 0.74158 1.18971 1.18741 1.18990 0.92845 0.93238 0.88399 0.92349 0.91631 0.94511 0.90669 0.90750 0.90395 0.92485 0.85321 0.85433 0.86517 0.88917 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.05 1.03 6.47 71.98 0.47 1.50 16 3 O -0.41 -13.38 9.95 -144.34 -1.44 -14.82 16 4 C 0.09 2.74 3.13 30.59 0.10 2.84 16 5 H 0.11 2.24 7.79 -2.39 -0.02 2.22 16 6 C -0.17 -4.91 9.33 71.98 0.67 -4.24 16 7 C 0.05 1.91 4.62 71.98 0.33 2.25 16 8 O -0.32 -15.38 8.52 -84.92 -0.72 -16.10 16 9 C 0.00 0.00 6.72 23.08 0.16 0.15 16 10 C -0.17 -7.77 9.04 22.34 0.20 -7.57 16 11 C -0.22 -9.31 10.04 22.43 0.23 -9.09 16 12 C -0.12 -5.51 9.97 22.00 0.22 -5.29 16 13 C -0.22 -11.94 7.93 22.47 0.18 -11.77 16 14 C 0.05 2.82 5.30 -21.20 -0.11 2.71 16 15 C -0.54 -31.88 8.64 23.40 0.20 -31.68 16 16 H 0.06 3.68 7.72 -2.91 -0.02 3.65 16 17 C 0.00 0.24 4.91 85.25 0.42 0.66 16 18 N -0.82 -46.48 12.32 21.83 0.27 -46.21 16 19 Si 1.11 46.76 30.01 68.60 2.06 48.82 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 27 H 0.07 1.17 8.08 -2.38 -0.02 1.15 16 28 H 0.04 1.40 7.56 -2.38 -0.02 1.38 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.78 7.87 -2.39 -0.02 1.76 16 31 H 0.08 2.40 7.65 -2.38 -0.02 2.38 16 32 H 0.06 1.93 7.68 -2.39 -0.02 1.91 16 33 H 0.13 4.76 6.31 -2.91 -0.02 4.74 16 34 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 36 H 0.09 5.24 6.52 -2.91 -0.02 5.22 16 37 H 0.28 16.61 6.78 -92.71 -0.63 15.98 16 Total: -1.00 -68.53 309.01 5.14 -63.40 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.18 Total: 26.86 kcal Atomic # 6 Polarization: -65.73 SS G_CDS: 3.79 Total: -61.93 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.27 Total: -46.21 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -2.16 Total: -30.92 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.06 Total: 48.82 kcal Total: -68.53 5.14 -63.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.144 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds