Wall clock time and date at job start Mon Mar 30 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35670 * 117.00263 * 2 1 4 4 C 1.38923 * 119.68783 * 180.29473 * 3 2 1 5 5 C 1.38379 * 119.11169 * 180.25008 * 4 3 2 6 6 C 1.50703 * 120.75517 * 179.73506 * 5 4 3 7 7 C 1.38822 * 118.48782 * 359.46469 * 5 4 3 8 8 C 1.50692 * 120.35709 * 180.24981 * 7 5 4 9 9 N 1.46902 * 109.47388 * 285.57740 * 8 7 5 10 10 C 1.46901 * 111.00237 * 287.88385 * 9 8 7 11 11 C 1.46902 * 111.00380 * 163.92762 * 9 8 7 12 12 C 1.50700 * 109.47088 * 190.00229 * 11 9 8 13 13 H 1.07995 * 120.00081 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99931 * 179.97438 * 12 11 9 15 15 N 1.31524 * 119.99797 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47240 * 60.00168 * 16 14 12 18 18 H 1.48505 * 109.47285 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46847 * 299.99942 * 16 14 12 20 20 C 1.38050 * 119.28965 * 0.27525 * 7 5 4 21 21 N 1.31971 * 120.83295 * 359.97438 * 20 7 5 22 22 H 1.09004 * 109.47196 * 59.99768 * 1 2 3 23 23 H 1.09002 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47056 * 300.00049 * 1 2 3 25 25 H 1.08007 * 120.44276 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.47339 * 263.36081 * 6 5 4 27 27 H 1.08997 * 109.47169 * 143.36259 * 6 5 4 28 28 H 1.08999 * 109.47481 * 23.35838 * 6 5 4 29 29 H 1.09002 * 109.47487 * 45.57561 * 8 7 5 30 30 H 1.09004 * 109.47203 * 165.58417 * 8 7 5 31 31 H 1.08999 * 109.47152 * 56.62046 * 10 9 8 32 32 H 1.08998 * 109.47078 * 176.62246 * 10 9 8 33 33 H 1.09004 * 109.47091 * 296.62182 * 10 9 8 34 34 H 1.09003 * 109.46487 * 310.00115 * 11 9 8 35 35 H 1.08993 * 109.47098 * 69.99980 * 11 9 8 36 36 H 0.97001 * 119.99689 * 179.97438 * 15 14 12 37 37 H 1.07995 * 119.58601 * 180.02562 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2739 -0.0062 5 6 4.0485 2.5131 -0.0009 6 6 5.5512 2.6268 -0.0013 7 6 3.2506 3.6490 -0.0008 8 6 3.8769 5.0196 -0.0008 9 7 4.4187 5.3105 1.3333 10 6 3.3387 5.5604 2.2972 11 6 5.3547 6.4418 1.2864 12 6 6.0718 6.5555 2.6070 13 1 5.8538 5.8576 3.4017 14 6 7.0062 7.5507 2.8005 15 7 7.2720 8.4004 1.8324 16 14 7.8956 7.6914 4.4371 17 1 8.6466 6.4379 4.7017 18 1 8.8417 8.8351 4.3897 19 1 6.9053 7.9134 5.5211 20 6 1.8771 3.5097 -0.0003 21 7 1.3186 2.3140 -0.0004 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.0229 0.3694 -0.0106 26 1 5.9053 2.7679 1.0199 27 1 5.8509 3.4793 -0.6108 28 1 5.9845 1.7154 -0.4133 29 1 4.6822 5.0512 -0.7347 30 1 3.1226 5.7638 -0.2566 31 1 2.6660 4.7031 2.3195 32 1 3.7648 5.7137 3.2887 33 1 2.7839 6.4499 1.9986 34 1 6.0818 6.2789 0.4909 35 1 4.8033 7.3616 1.0919 36 1 7.9292 9.1008 1.9687 37 1 1.2519 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232351857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:27 Heat of formation + Delta-G solvation = -3.046104 kcal Electronic energy + Delta-G solvation = -18170.754833 eV Core-core repulsion = 15334.486824 eV Total energy + Delta-G solvation = -2836.268009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56867 -38.23249 -36.31877 -33.63935 -32.61838 -30.99790 -28.40394 -27.06178 -26.89823 -26.30025 -23.89476 -22.44935 -21.32415 -20.07004 -17.73538 -17.08986 -16.42574 -15.96575 -15.12897 -14.82603 -14.60878 -14.24635 -14.18994 -13.78708 -13.32412 -13.05930 -12.52428 -12.44133 -12.09588 -11.94924 -11.91283 -11.48209 -11.21076 -11.20580 -10.94474 -10.87257 -10.69608 -10.47827 -9.93145 -9.45608 -9.26564 -9.17968 -8.45842 -8.21087 -7.27971 -6.04748 -4.06120 1.33134 1.48675 3.15459 3.32352 3.36553 3.39469 3.91104 4.41668 4.45370 4.97328 5.03686 5.12061 5.16814 5.25434 5.30156 5.34182 5.37301 5.54722 5.71252 5.79118 5.93902 6.00643 6.08803 6.13330 6.24175 6.32264 6.39947 6.70404 6.71184 6.76672 7.24126 7.30671 7.33770 7.77140 7.99792 8.04549 8.16721 8.51376 9.01379 9.58288 11.05996 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040333 B = 0.004524 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.053730 B = 6188.192437 C = 6269.529600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.313 6.313 3 C 0.308 3.692 4 C -0.196 4.196 5 C 0.019 3.981 6 C -0.111 4.111 7 C -0.151 4.151 8 C 0.098 3.902 9 N -0.533 5.533 10 C 0.039 3.961 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.139 3.861 21 N -0.548 5.548 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.030 0.970 35 H -0.009 1.009 36 H 0.262 0.738 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -12.457 -4.943 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.221 6.221 3 C 0.130 3.870 4 C -0.217 4.217 5 C 0.011 3.989 6 C -0.167 4.167 7 C -0.154 4.154 8 C -0.031 4.031 9 N -0.257 5.257 10 C -0.110 4.110 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.016 4.016 21 N -0.272 5.272 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.154 0.846 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.140 -13.045 -4.829 17.213 hybrid contribution 0.596 1.103 0.631 1.403 sum -9.544 -11.942 -4.198 15.853 Atomic orbital electron populations 1.22774 0.77783 1.02408 1.02306 1.86201 1.22484 1.25012 1.88384 1.19740 0.89300 0.84506 0.93466 1.20899 0.91720 0.98923 1.10151 1.20020 0.97235 0.90884 0.90783 1.20806 0.89205 1.02161 1.04514 1.20711 0.93930 0.96743 1.04017 1.20864 0.97889 0.90507 0.93799 1.62112 1.15759 1.43805 1.04064 1.22200 0.93188 0.97383 0.98182 1.19756 0.89907 0.85402 0.98094 1.21108 1.21366 1.13303 0.98794 0.91939 1.24976 0.96962 0.95670 0.96920 1.69948 1.34141 1.17543 1.32238 0.86571 0.79485 0.77530 0.83885 1.20157 1.21376 1.20320 1.22232 0.92308 0.93285 0.93800 1.67250 1.40829 0.98729 1.20348 0.92572 0.89060 0.92494 0.84588 0.88869 0.90440 0.92161 0.90204 0.94844 0.93920 0.90844 0.96918 0.95164 0.99112 0.92864 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.31 -4.27 10.48 -18.71 -0.20 -4.46 16 3 C 0.31 4.64 7.49 -17.12 -0.13 4.51 16 4 C -0.20 -2.82 9.72 -39.28 -0.38 -3.20 16 5 C 0.02 0.28 5.91 -104.35 -0.62 -0.34 16 6 C -0.11 -1.56 9.50 36.01 0.34 -1.22 16 7 C -0.15 -2.37 4.68 -104.48 -0.49 -2.85 16 8 C 0.10 1.68 4.48 -4.98 -0.02 1.66 16 9 N -0.53 -10.95 4.62 -245.82 -1.14 -12.09 16 10 C 0.04 0.76 9.19 60.07 0.55 1.31 16 11 C 0.19 4.83 4.71 -4.97 -0.02 4.81 16 12 C -0.51 -13.85 8.51 -34.44 -0.29 -14.14 16 13 H 0.06 1.70 7.10 -52.49 -0.37 1.32 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 16 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.14 2.07 10.30 -17.56 -0.18 1.89 16 21 N -0.55 -8.38 9.22 -13.33 -0.12 -8.50 16 22 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.60 8.10 -51.93 -0.42 0.17 16 25 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.13 6.65 -51.93 -0.35 0.78 16 28 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 29 H 0.08 1.36 6.53 -51.93 -0.34 1.02 16 30 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 31 H 0.04 0.74 6.99 -51.93 -0.36 0.38 16 32 H 0.07 1.52 6.84 -51.93 -0.36 1.17 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 1.97 8.00 -52.49 -0.42 1.55 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -29.92 309.81 -6.88 -36.80 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.52 Total: -2.61 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.29 Total: -4.64 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.52 Total: -46.07 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.92 -6.88 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232351857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.749 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds