Wall clock time and date at job start Mon Mar 30 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35670 * 117.00263 * 2 1 4 4 C 1.38923 * 119.68783 * 180.29473 * 3 2 1 5 5 C 1.38379 * 119.11169 * 180.25008 * 4 3 2 6 6 C 1.50703 * 120.75517 * 179.73506 * 5 4 3 7 7 C 1.38822 * 118.48782 * 359.46469 * 5 4 3 8 8 C 1.50692 * 120.35709 * 180.24981 * 7 5 4 9 9 N 1.46902 * 109.47388 * 285.57740 * 8 7 5 10 10 C 1.46901 * 111.00237 * 287.88385 * 9 8 7 11 11 C 1.46902 * 111.00380 * 163.92762 * 9 8 7 12 12 C 1.50700 * 109.47088 * 190.00229 * 11 9 8 13 13 H 1.07995 * 120.00081 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99931 * 179.97438 * 12 11 9 15 15 N 1.31524 * 119.99797 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47240 * 60.00168 * 16 14 12 18 18 H 1.48505 * 109.47285 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46847 * 299.99942 * 16 14 12 20 20 C 1.38050 * 119.28965 * 0.27525 * 7 5 4 21 21 N 1.31971 * 120.83295 * 359.97438 * 20 7 5 22 22 H 1.09004 * 109.47196 * 59.99768 * 1 2 3 23 23 H 1.09002 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47056 * 300.00049 * 1 2 3 25 25 H 1.08007 * 120.44276 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.47339 * 263.36081 * 6 5 4 27 27 H 1.08997 * 109.47169 * 143.36259 * 6 5 4 28 28 H 1.08999 * 109.47481 * 23.35838 * 6 5 4 29 29 H 1.09002 * 109.47487 * 45.57561 * 8 7 5 30 30 H 1.09004 * 109.47203 * 165.58417 * 8 7 5 31 31 H 1.08999 * 109.47152 * 56.62046 * 10 9 8 32 32 H 1.08998 * 109.47078 * 176.62246 * 10 9 8 33 33 H 1.09004 * 109.47091 * 296.62182 * 10 9 8 34 34 H 1.09003 * 109.46487 * 310.00115 * 11 9 8 35 35 H 1.08993 * 109.47098 * 69.99980 * 11 9 8 36 36 H 0.97001 * 119.99689 * 179.97438 * 15 14 12 37 37 H 1.07995 * 119.58601 * 180.02562 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2739 -0.0062 5 6 4.0485 2.5131 -0.0009 6 6 5.5512 2.6268 -0.0013 7 6 3.2506 3.6490 -0.0008 8 6 3.8769 5.0196 -0.0008 9 7 4.4187 5.3105 1.3333 10 6 3.3387 5.5604 2.2972 11 6 5.3547 6.4418 1.2864 12 6 6.0718 6.5555 2.6070 13 1 5.8538 5.8576 3.4017 14 6 7.0062 7.5507 2.8005 15 7 7.2720 8.4004 1.8324 16 14 7.8956 7.6914 4.4371 17 1 8.6466 6.4379 4.7017 18 1 8.8417 8.8351 4.3897 19 1 6.9053 7.9134 5.5211 20 6 1.8771 3.5097 -0.0003 21 7 1.3186 2.3140 -0.0004 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.0229 0.3694 -0.0106 26 1 5.9053 2.7679 1.0199 27 1 5.8509 3.4793 -0.6108 28 1 5.9845 1.7154 -0.4133 29 1 4.6822 5.0512 -0.7347 30 1 3.1226 5.7638 -0.2566 31 1 2.6660 4.7031 2.3195 32 1 3.7648 5.7137 3.2887 33 1 2.7839 6.4499 1.9986 34 1 6.0818 6.2789 0.4909 35 1 4.8033 7.3616 1.0919 36 1 7.9292 9.1008 1.9687 37 1 1.2519 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232351857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:27 Heat of formation + Delta-G solvation = -23.642221 kcal Electronic energy + Delta-G solvation = -18171.647948 eV Core-core repulsion = 15334.486824 eV Total energy + Delta-G solvation = -2837.161124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70335 -39.38127 -37.86261 -34.97845 -34.48496 -32.32257 -29.65945 -28.85533 -28.07649 -27.51706 -25.57838 -23.71354 -22.77358 -21.56014 -18.80517 -18.49574 -18.21362 -17.02822 -16.80433 -16.24439 -15.99258 -15.83238 -15.36983 -15.09967 -14.63748 -14.57406 -13.85992 -13.64919 -13.59157 -13.32115 -13.24930 -12.86712 -12.79176 -12.61465 -12.56689 -12.35880 -12.24323 -12.01858 -11.82130 -11.31203 -10.59191 -10.56743 -10.38420 -9.38539 -8.97414 -8.17244 -6.26454 0.18288 0.30807 1.43511 1.45541 1.53444 2.16347 2.42443 2.73421 3.15733 3.36555 3.47817 3.82872 3.96407 4.07882 4.18642 4.44294 4.45681 4.51488 4.54060 4.61663 4.69347 4.74569 4.77696 4.87730 4.95004 4.96145 5.09089 5.21351 5.24570 5.34352 5.56102 5.56825 5.68307 6.08131 6.26457 6.34367 6.64555 6.85639 6.89641 7.43069 8.93220 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040333 B = 0.004524 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.053730 B = 6188.192437 C = 6269.529600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.302 3.698 4 C -0.197 4.197 5 C 0.012 3.988 6 C -0.106 4.106 7 C -0.163 4.163 8 C 0.103 3.897 9 N -0.536 5.536 10 C 0.045 3.955 11 C 0.209 3.791 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.005 3.995 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.140 3.860 21 N -0.555 5.555 22 H 0.055 0.945 23 H 0.123 0.877 24 H 0.053 0.947 25 H 0.156 0.844 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.010 0.990 35 H -0.036 1.036 36 H 0.264 0.736 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -13.907 -4.440 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.123 3.877 4 C -0.218 4.218 5 C 0.005 3.995 6 C -0.162 4.162 7 C -0.166 4.166 8 C -0.025 4.025 9 N -0.260 5.260 10 C -0.103 4.103 11 C 0.083 3.917 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.015 4.015 21 N -0.279 5.279 22 H 0.074 0.926 23 H 0.141 0.859 24 H 0.071 0.929 25 H 0.174 0.826 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.028 0.972 35 H -0.019 1.019 36 H 0.072 0.928 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.793 -14.523 -4.328 18.605 hybrid contribution 0.696 1.468 0.420 1.678 sum -10.097 -13.055 -3.908 16.960 Atomic orbital electron populations 1.23029 0.76029 1.04538 1.02093 1.86201 1.24236 1.24248 1.88044 1.20006 0.89788 0.84926 0.92950 1.21095 0.91848 0.99306 1.09518 1.20162 0.97558 0.91146 0.90676 1.20753 0.88972 1.03165 1.03318 1.20562 0.94442 0.95842 1.05768 1.20814 0.98014 0.91889 0.91796 1.62004 1.16287 1.41432 1.06282 1.22137 0.92885 0.98443 0.96867 1.19399 0.90027 0.85734 0.96531 1.21421 1.21634 1.13263 0.99585 0.92083 1.25829 0.97762 0.95281 1.00473 1.70070 1.34863 1.18196 1.34301 0.85516 0.78327 0.77709 0.79547 1.19361 1.20992 1.19520 1.22469 0.92138 0.93867 0.93002 1.67309 1.40993 0.98888 1.20750 0.92585 0.85851 0.92857 0.82611 0.90687 0.91435 0.89447 0.90545 0.93981 0.91749 0.92593 0.96673 0.97183 1.01870 0.92753 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.86 16 2 O -0.32 -8.00 10.48 -89.87 -0.94 -8.94 16 3 C 0.30 8.49 7.49 84.79 0.63 9.13 16 4 C -0.20 -5.29 9.72 22.47 0.22 -5.07 16 5 C 0.01 0.36 5.91 -19.69 -0.12 0.24 16 6 C -0.11 -2.90 9.50 71.24 0.68 -2.22 16 7 C -0.16 -4.94 4.68 -19.77 -0.09 -5.03 16 8 C 0.10 3.51 4.48 85.55 0.38 3.90 16 9 N -0.54 -22.12 4.62 -931.65 -4.31 -26.43 16 10 C 0.05 1.72 9.19 127.69 1.17 2.90 16 11 C 0.21 10.72 4.71 85.56 0.40 11.12 16 12 C -0.52 -28.78 8.51 25.60 0.22 -28.56 16 13 H 0.06 3.33 7.10 -2.91 -0.02 3.31 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 16 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 C 0.14 3.94 10.30 84.63 0.87 4.82 16 21 N -0.56 -15.98 9.22 -308.95 -2.85 -18.82 16 22 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 23 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 25 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 27 H 0.07 1.97 6.65 -2.39 -0.02 1.95 16 28 H 0.09 1.87 8.06 -2.39 -0.02 1.85 16 29 H 0.08 2.64 6.53 -2.39 -0.02 2.62 16 30 H 0.04 1.36 7.86 -2.38 -0.02 1.34 16 31 H 0.06 2.16 6.99 -2.39 -0.02 2.15 16 32 H 0.06 2.31 6.84 -2.39 -0.02 2.30 16 33 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.01 0.55 7.86 -2.39 -0.02 0.53 16 35 H -0.04 -2.03 8.12 -2.39 -0.02 -2.05 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.17 4.05 8.00 -2.91 -0.02 4.02 16 Total: -1.00 -63.33 309.81 1.27 -62.06 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.05 Total: 7.53 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.01 Total: -6.19 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -6.87 Total: -100.17 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.94 Total: -8.94 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.33 1.27 -62.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232351857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.415 kcal (2) G-P(sol) polarization free energy of solvation -63.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds