Wall clock time and date at job start Mon Mar 30 2020 18:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35913 * 116.99815 * 2 1 4 4 C 1.39136 * 120.47747 * 359.97438 * 3 2 1 5 5 C 1.38535 * 118.37820 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.21650 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.54992 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46612 * 95.00712 * 7 6 5 9 9 C 1.46901 * 110.99966 * 293.94761 * 8 7 6 10 10 C 1.46902 * 110.99838 * 169.99631 * 8 7 6 11 11 C 1.50694 * 109.47375 * 189.99780 * 10 8 7 12 12 H 1.08002 * 120.00032 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00197 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99995 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00137 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47158 * 90.00206 * 15 13 11 17 17 H 1.48501 * 109.47319 * 210.00453 * 15 13 11 18 18 H 1.48498 * 109.47036 * 330.00203 * 15 13 11 19 19 N 1.31843 * 120.88833 * 0.02562 * 6 5 4 20 20 C 1.31834 * 121.78262 * 359.97438 * 19 6 5 21 21 C 1.50703 * 119.65993 * 180.27467 * 20 19 6 22 22 H 1.09009 * 109.46934 * 299.99322 * 1 2 3 23 23 H 1.09000 * 109.47513 * 59.99182 * 1 2 3 24 24 H 1.08997 * 109.47518 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.81116 * 0.04267 * 4 3 2 26 26 H 1.07992 * 120.38935 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.46864 * 214.99751 * 7 6 5 28 28 H 1.08998 * 109.47378 * 335.00389 * 7 6 5 29 29 H 1.08992 * 109.46841 * 60.00033 * 9 8 7 30 30 H 1.08999 * 109.46914 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.46895 * 300.00304 * 9 8 7 32 32 H 1.09007 * 109.47193 * 310.00069 * 10 8 7 33 33 H 1.09008 * 109.47098 * 69.99842 * 10 8 7 34 34 H 0.97000 * 119.99982 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47232 * 269.72942 * 21 20 19 36 36 H 1.08993 * 109.46851 * 29.72704 * 21 20 19 37 37 H 1.08999 * 109.47233 * 149.72599 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2979 2.3842 -0.0005 5 6 1.9716 3.5947 -0.0011 6 6 3.3542 3.5975 -0.0005 7 6 4.0947 4.9101 -0.0016 8 7 4.4400 5.2786 1.3779 9 6 3.2323 5.5594 2.1657 10 6 5.3621 6.4219 1.4023 11 6 5.8846 6.6161 2.8023 12 1 5.5634 5.9565 3.5949 13 6 6.7717 7.6365 3.0717 14 7 7.2273 7.8063 4.2937 15 14 7.3267 8.7779 1.7010 16 1 6.4029 9.9375 1.6180 17 1 8.7023 9.2601 1.9849 18 1 7.3163 8.0432 0.4105 19 7 4.0334 2.4675 0.0000 20 6 3.4305 1.2951 0.0005 21 6 4.2542 0.0330 0.0074 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2184 2.3519 -0.0003 26 1 1.4232 4.5250 -0.0019 27 1 5.0066 4.8122 -0.5906 28 1 3.4622 5.6837 -0.4370 29 1 2.5993 4.6725 2.1889 30 1 3.5167 5.8300 3.1826 31 1 2.6850 6.3846 1.7100 32 1 6.1958 6.2307 0.7265 33 1 4.8347 7.3210 1.0833 34 1 7.8518 8.5240 4.4832 35 1 4.4531 -0.2766 -1.0186 36 1 5.1978 0.2179 0.5205 37 1 3.7073 -0.7549 0.5252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249888083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:37 Heat of formation + Delta-G solvation = 5.167769 kcal Electronic energy + Delta-G solvation = -18036.348747 eV Core-core repulsion = 15200.436918 eV Total energy + Delta-G solvation = -2835.911829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73494 -38.43341 -36.48174 -33.18315 -32.41858 -31.47725 -28.71616 -27.88502 -27.36982 -26.26127 -23.74976 -22.23190 -21.40934 -20.10308 -18.13835 -17.11793 -16.83513 -16.06567 -15.42259 -14.82403 -14.64954 -14.22856 -14.14777 -13.79618 -13.76284 -13.29864 -12.86095 -12.38166 -12.22617 -12.20305 -11.92812 -11.67457 -11.56452 -11.42347 -11.11789 -10.95443 -10.65171 -10.24306 -9.82443 -9.59938 -9.35790 -9.23644 -8.54612 -8.17384 -7.35454 -6.01658 -3.98803 1.19494 1.32149 3.06360 3.30678 3.38552 3.41053 3.78823 4.38064 4.45137 4.59290 4.63975 4.83441 4.88528 5.01779 5.13692 5.18926 5.29666 5.32017 5.56809 5.65379 5.72177 5.76940 5.96690 6.03579 6.12412 6.16503 6.22256 6.28762 6.52301 6.70681 6.85416 7.00652 7.14535 7.62045 7.90642 8.04544 8.23472 8.68946 9.07239 9.59749 11.11561 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.004465 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.874554 B = 6269.290728 C = 6410.711800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.063 3.937 4 C -0.162 4.162 5 C -0.135 4.135 6 C 0.123 3.877 7 C 0.102 3.898 8 N -0.521 5.521 9 C 0.034 3.966 10 C 0.163 3.837 11 C -0.507 4.507 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.266 1.266 19 N -0.428 5.428 20 C 0.107 3.893 21 C -0.094 4.094 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.012 0.988 32 H 0.031 0.969 33 H -0.015 1.015 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -13.020 -11.054 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.016 3.984 4 C -0.188 4.188 5 C -0.156 4.156 6 C -0.016 4.016 7 C -0.027 4.027 8 N -0.245 5.245 9 C -0.115 4.115 10 C 0.037 3.963 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.703 3.297 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.138 5.138 20 C -0.033 4.033 21 C -0.151 4.151 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.002 0.998 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.993 -13.461 -10.727 21.565 hybrid contribution -1.397 1.601 -0.931 2.320 sum -14.390 -11.860 -11.658 21.991 Atomic orbital electron populations 1.23054 0.78723 1.03892 1.01263 1.86074 1.21030 1.26200 1.88919 1.19893 0.93282 0.84828 1.00424 1.21581 1.00331 0.92081 1.04817 1.21822 0.95085 0.98158 1.00504 1.21156 0.90383 0.94020 0.96015 1.20942 0.98928 0.89902 0.92942 1.61904 1.14046 1.40451 1.08090 1.22313 0.91287 0.97604 1.00247 1.20221 0.91091 0.85974 0.99026 1.21023 1.25829 1.14483 0.93232 0.90137 1.24892 0.95873 0.97246 0.95330 1.69898 1.32548 1.32344 1.19233 0.86857 0.78248 0.81405 0.83213 1.20405 1.21143 1.19086 1.67437 1.39580 0.96902 1.09881 1.20821 0.88051 0.94634 0.99781 1.20565 0.99634 0.92190 1.02726 0.92697 0.92825 0.88206 0.84667 0.84855 0.89494 0.94199 0.93558 0.90024 0.96957 0.95101 0.99766 0.92688 0.90884 0.90264 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.18 16 2 O -0.31 -3.51 9.55 -19.47 -0.19 -3.70 16 3 C 0.06 0.84 6.67 -39.07 -0.26 0.58 16 4 C -0.16 -1.98 9.14 -39.14 -0.36 -2.34 16 5 C -0.14 -1.87 8.35 -39.46 -0.33 -2.20 16 6 C 0.12 2.07 5.64 -82.58 -0.47 1.60 16 7 C 0.10 1.85 5.28 -4.97 -0.03 1.82 16 8 N -0.52 -11.41 4.74 -245.82 -1.17 -12.58 16 9 C 0.03 0.67 9.02 60.07 0.54 1.21 16 10 C 0.16 4.04 3.79 -4.98 -0.02 4.02 16 11 C -0.51 -14.71 9.01 -34.44 -0.31 -15.02 16 12 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 15 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 N -0.43 -7.55 10.18 -5.62 -0.06 -7.61 16 20 C 0.11 1.62 6.80 -82.41 -0.56 1.06 16 21 C -0.09 -1.15 9.95 36.01 0.36 -0.79 16 22 H 0.05 0.36 7.70 -51.92 -0.40 -0.04 16 23 H 0.05 0.33 7.70 -51.93 -0.40 -0.07 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.14 1.22 6.45 -52.49 -0.34 0.88 16 26 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 28 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 29 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 30 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.03 0.78 6.99 -51.93 -0.36 0.41 16 33 H -0.02 -0.37 7.55 -51.92 -0.39 -0.76 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -33.01 304.93 -6.70 -39.72 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.46 Total: -3.31 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.53 Total: -6.97 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.45 Total: -47.36 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.01 -6.70 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249888083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds