Wall clock time and date at job start Mon Mar 30 2020 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99549 * 2 1 4 4 O 1.42894 * 109.46990 * 75.00092 * 3 2 1 5 5 C 1.35903 * 117.00226 * 75.00001 * 4 3 2 6 6 C 1.38752 * 120.05492 * 359.97438 * 5 4 3 7 7 C 1.38122 * 119.94623 * 180.02562 * 6 5 4 8 8 C 1.38293 * 120.05136 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94147 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46912 * 265.00165 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00636 * 15 13 11 17 17 H 1.48494 * 109.47178 * 210.00332 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00579 * 15 13 11 19 19 C 1.38236 * 120.11323 * 0.25500 * 8 7 6 20 20 C 1.50703 * 119.97494 * 179.70448 * 19 8 7 21 21 C 1.38175 * 120.05734 * 359.45341 * 19 8 7 22 22 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47173 * 300.00254 * 1 2 3 24 24 H 1.09006 * 109.46818 * 60.00121 * 1 2 3 25 25 H 1.08994 * 109.47030 * 314.99410 * 3 2 1 26 26 H 1.09004 * 109.46503 * 194.99859 * 3 2 1 27 27 H 1.07998 * 120.02542 * 359.97438 * 6 5 4 28 28 H 1.07991 * 119.97571 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.47152 * 144.99936 * 9 8 7 30 30 H 1.09001 * 109.46980 * 25.00037 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 33 33 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47130 * 89.99669 * 20 19 8 35 35 H 1.08999 * 109.47440 * 210.00396 * 20 19 8 36 36 H 1.09002 * 109.46951 * 330.00229 * 20 19 8 37 37 H 1.08001 * 120.03048 * 180.25181 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 8 1.8853 1.8825 1.3013 5 6 2.7187 1.4132 2.2669 6 6 3.6375 0.4174 1.9680 7 6 4.4830 -0.0583 2.9511 8 6 4.4139 0.4569 4.2327 9 6 5.3373 -0.0643 5.3036 10 6 4.6276 -1.1620 6.0988 11 6 5.5512 -1.6837 7.1693 12 1 6.5448 -1.2730 7.2725 13 6 5.1274 -2.6845 8.0178 14 7 3.9174 -3.1842 7.8925 15 14 6.2725 -3.3316 9.3443 16 1 6.0870 -2.5404 10.5873 17 1 5.9609 -4.7581 9.6144 18 1 7.6797 -3.2105 8.8857 19 6 3.4955 1.4450 4.5344 20 6 3.4184 1.9994 5.9336 21 6 2.6515 1.9284 3.5530 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.4941 1.9329 -0.7267 26 1 3.0648 1.2337 -0.2660 27 1 3.6908 0.0140 0.9676 28 1 5.1980 -0.8336 2.7191 29 1 5.6124 0.7499 5.9740 30 1 6.2356 -0.4735 4.8412 31 1 3.7294 -0.7528 6.5612 32 1 4.3526 -1.9762 5.4285 33 1 3.6191 -3.8880 8.4896 34 1 4.0919 2.8516 6.0244 35 1 2.3974 2.3192 6.1420 36 1 3.7102 1.2282 6.6466 37 1 1.9369 2.7033 3.7882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:43 Heat of formation + Delta-G solvation = -82.796876 kcal Electronic energy + Delta-G solvation = -17921.729558 eV Core-core repulsion = 15049.710545 eV Total energy + Delta-G solvation = -2872.019013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15328 -38.40200 -36.61640 -33.73807 -32.15880 -31.65422 -28.86602 -27.72715 -26.58313 -25.35502 -24.45404 -22.02716 -21.13612 -19.79740 -17.85078 -16.97887 -16.75694 -16.33625 -15.39648 -15.01901 -14.55870 -14.43948 -13.89424 -13.68864 -13.38085 -13.02673 -12.81247 -12.44781 -12.28793 -11.88997 -11.64940 -11.45178 -11.29176 -11.13992 -10.91973 -10.64375 -10.50156 -10.42723 -10.19179 -9.74147 -9.49165 -9.03392 -8.37341 -8.31452 -7.55706 -5.96509 -3.99601 1.74982 1.87830 3.28418 3.33721 3.40084 3.43360 3.57044 4.18146 4.48777 4.77492 4.93911 5.12568 5.21894 5.24845 5.31643 5.38826 5.53576 5.55995 5.64043 5.80716 5.84672 6.08171 6.16442 6.26932 6.43996 6.57204 6.68291 6.72775 6.75793 6.89968 7.01199 7.22244 7.25770 7.66476 7.73726 7.87437 8.04728 8.44559 9.07842 9.64318 11.14363 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.004421 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.536278 B = 6331.931805 C = 6668.800991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.213 3.787 4 O -0.336 6.336 5 C 0.106 3.894 6 C -0.198 4.198 7 C -0.083 4.083 8 C -0.090 4.090 9 C -0.077 4.077 10 C 0.029 3.971 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.050 4.050 20 C -0.121 4.121 21 C -0.150 4.150 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 10.257 -14.473 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.100 3.900 4 O -0.253 6.253 5 C 0.063 3.937 6 C -0.216 4.216 7 C -0.101 4.101 8 C -0.090 4.090 9 C -0.114 4.114 10 C -0.008 4.008 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.050 4.050 20 C -0.177 4.177 21 C -0.169 4.169 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.751 10.097 -14.388 18.208 hybrid contribution 0.367 -0.463 0.495 0.771 sum -4.385 9.634 -13.892 17.465 Atomic orbital electron populations 1.22805 0.80363 1.03075 1.00338 1.88075 1.20949 1.28660 1.93672 1.24099 0.99596 0.83227 0.83114 1.86157 1.58243 1.60823 1.20071 1.18761 0.91108 0.95188 0.88643 1.21135 0.99451 1.00451 1.00593 1.20867 0.98348 0.98587 0.92296 1.20175 0.97928 0.95688 0.95183 1.20781 0.96405 0.99628 0.94577 1.19089 0.95608 0.92090 0.94015 1.21274 1.00139 1.19398 1.15188 0.92635 1.25017 0.95107 0.96592 0.97641 1.69974 1.17413 1.27532 1.38414 0.86618 0.81218 0.78109 0.82201 1.20681 1.21271 1.19878 1.19573 0.94526 0.95559 0.95306 1.20917 1.01699 1.01660 0.93438 1.20201 1.02892 1.03531 0.90268 0.89462 0.93161 0.93974 0.88286 0.88263 0.85813 0.85968 0.92116 0.92516 0.96195 0.96554 0.93023 0.91550 0.92101 0.89265 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.89 101.05 1.10 1.40 16 2 O -0.39 -4.89 10.19 -59.04 -0.60 -5.49 16 3 C 0.21 2.27 6.39 101.05 0.65 2.92 16 4 O -0.34 -4.73 10.19 -43.25 -0.44 -5.17 16 5 C 0.11 1.72 6.63 -39.22 -0.26 1.46 16 6 C -0.20 -3.19 8.78 -39.43 -0.35 -3.54 16 7 C -0.08 -1.47 9.67 -39.60 -0.38 -1.86 16 8 C -0.09 -1.72 5.13 -104.60 -0.54 -2.26 16 9 C -0.08 -1.62 4.58 -27.88 -0.13 -1.75 16 10 C 0.03 0.76 4.76 -27.88 -0.13 0.62 16 11 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 C -0.05 -0.88 5.88 -104.64 -0.62 -1.50 16 20 C -0.12 -1.96 9.21 36.01 0.33 -1.63 16 21 C -0.15 -2.49 9.64 -39.43 -0.38 -2.87 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16 24 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 25 H 0.10 0.74 8.01 -51.93 -0.42 0.32 16 26 H 0.10 0.94 6.70 -51.93 -0.35 0.59 16 27 H 0.12 1.76 5.86 -52.49 -0.31 1.45 16 28 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 29 H 0.06 1.23 7.00 -51.93 -0.36 0.86 16 30 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 31 H 0.02 0.55 6.87 -51.93 -0.36 0.19 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.09 1.66 5.39 -51.93 -0.28 1.38 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -31.98 309.37 -7.18 -39.17 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.40 Total: -0.92 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.12 Total: -22.53 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.04 Total: -10.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.98 -7.18 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.630 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds