Wall clock time and date at job start Mon Mar 30 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47130 * 2 1 4 4 C 1.35989 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07399 * 359.97438 * 4 3 2 6 6 C 1.38248 * 119.99773 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.92337 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47083 * 89.99709 * 7 6 5 9 9 C 1.50699 * 109.47080 * 179.97438 * 8 7 6 10 10 H 1.08008 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00416 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99702 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00297 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47213 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46966 * 120.00040 * 13 11 9 16 16 H 1.48495 * 109.47056 * 239.99844 * 13 11 9 17 17 C 1.38249 * 120.14769 * 359.97438 * 6 5 4 18 18 C 1.38243 * 120.14885 * 359.76965 * 17 6 5 19 19 C 1.38568 * 119.99625 * 0.50940 * 18 17 6 20 20 O 1.35987 * 120.07352 * 179.74382 * 19 18 17 21 21 C 1.42905 * 117.00096 * 359.72402 * 20 19 18 22 22 H 1.09007 * 109.47288 * 59.99706 * 1 2 3 23 23 H 1.09002 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47418 * 299.99797 * 1 2 3 25 25 H 1.09000 * 109.47418 * 240.00203 * 2 1 3 26 26 H 1.08997 * 109.47223 * 120.00428 * 2 1 3 27 27 H 1.08002 * 120.00278 * 359.97438 * 5 4 3 28 28 H 1.09000 * 109.47027 * 209.99982 * 7 6 5 29 29 H 1.08996 * 109.47332 * 329.99661 * 7 6 5 30 30 H 1.08993 * 109.47173 * 299.99754 * 8 7 6 31 31 H 1.09004 * 109.46872 * 60.00631 * 8 7 6 32 32 H 0.96997 * 119.99786 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.92425 * 180.02562 * 17 6 5 34 34 H 1.08001 * 120.00196 * 180.25609 * 18 17 6 35 35 H 1.09001 * 109.47103 * 300.00410 * 21 20 19 36 36 H 1.09004 * 109.47054 * 59.99914 * 21 20 19 37 37 H 1.09000 * 109.47187 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4277 0.0016 6 6 5.5703 0.6106 0.0027 7 6 6.4883 -0.5845 0.0032 8 6 6.8000 -0.9888 -1.4390 9 6 7.7185 -2.1836 -1.4385 10 1 8.0468 -2.6120 -0.5029 11 6 8.1399 -2.7298 -2.6322 12 7 7.7398 -2.2085 -3.7715 13 14 9.2778 -4.2112 -2.6315 14 1 9.5773 -4.6047 -1.2313 15 1 8.6186 -5.3421 -3.3328 16 1 10.5417 -3.8649 -3.3299 17 6 6.1003 1.8875 0.0022 18 6 5.2624 2.9871 -0.0042 19 6 3.8880 2.8107 0.0005 20 8 3.0623 3.8913 -0.0005 21 6 3.6801 5.1799 -0.0004 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7885 -0.5709 0.0024 28 1 7.4150 -0.3306 0.5178 29 1 6.0035 -1.4148 0.5166 30 1 5.8733 -1.2428 -1.9535 31 1 7.2850 -0.1585 -1.9524 32 1 8.0365 -2.5926 -4.6113 33 1 7.1713 2.0263 0.0026 34 1 5.6790 3.9835 -0.0088 35 1 4.2999 5.2856 0.8900 36 1 4.3013 5.2850 -0.8900 37 1 2.9106 5.9518 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:46 Heat of formation + Delta-G solvation = -70.347547 kcal Electronic energy + Delta-G solvation = -17880.569222 eV Core-core repulsion = 15009.090052 eV Total energy + Delta-G solvation = -2871.479170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28582 -38.31752 -37.08030 -33.70860 -32.03550 -31.41672 -29.61179 -28.67969 -27.05332 -24.78528 -23.73384 -21.90951 -21.31447 -20.16569 -18.16348 -16.91016 -16.32775 -16.23157 -16.06842 -15.35378 -14.48573 -14.43190 -14.09777 -13.80210 -13.37230 -13.17700 -12.59460 -12.48671 -12.34530 -11.95925 -11.89026 -11.69229 -11.30077 -11.05409 -10.95603 -10.84418 -10.70865 -10.48119 -10.37361 -9.83880 -9.48978 -9.08429 -8.37212 -8.29417 -7.37441 -6.00285 -4.03516 1.63690 1.82228 3.30427 3.37958 3.38221 3.41979 3.45825 4.08451 4.45672 4.97015 4.99029 5.04886 5.16957 5.19698 5.30867 5.32880 5.35301 5.42892 5.47978 5.62619 5.69602 5.81562 5.83472 5.94865 6.01219 6.33712 6.51483 6.63570 6.66653 6.90881 7.10590 7.15345 7.28043 7.68028 7.81412 7.84890 7.99829 8.40092 9.03911 9.60674 11.10728 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.004932 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.257743 B = 5676.276099 C = 6508.306667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.310 6.310 4 C 0.101 3.899 5 C -0.172 4.172 6 C -0.051 4.051 7 C -0.077 4.077 8 C 0.029 3.971 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.119 4.119 18 C -0.169 4.169 19 C 0.075 3.925 20 O -0.312 6.312 21 C 0.029 3.971 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 9.971 8.354 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.225 6.225 4 C 0.056 3.944 5 C -0.191 4.191 6 C -0.051 4.051 7 C -0.115 4.115 8 C -0.008 4.008 9 C -0.560 4.560 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.138 4.138 18 C -0.187 4.187 19 C 0.030 3.970 20 O -0.226 6.226 21 C -0.067 4.067 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.656 10.094 8.166 16.797 hybrid contribution 1.013 -0.875 -0.240 1.359 sum -9.643 9.219 7.926 15.518 Atomic orbital electron populations 1.21742 0.93068 1.02547 1.03221 1.22764 0.95544 0.82433 1.01648 1.86098 1.18470 1.28594 1.89315 1.18161 0.82768 0.91110 1.02337 1.21007 0.93629 0.97268 1.07165 1.20102 0.93433 0.95915 0.95659 1.20810 0.96248 0.92652 1.01757 1.19081 0.96717 0.96227 0.88740 1.21299 1.28747 1.13593 0.92363 0.92528 1.25028 0.96467 0.97266 0.95653 1.69988 1.45015 1.41084 0.97255 0.86544 0.80657 0.82775 0.78085 1.19705 1.21024 1.21005 1.20798 0.99714 0.91341 1.01902 1.20981 0.91109 0.99922 1.06727 1.18114 0.88932 0.84977 1.04975 1.86119 1.33920 1.12820 1.89761 1.22973 0.99479 0.83153 1.01047 0.91661 0.90557 0.91799 0.91820 0.92182 0.84930 0.92057 0.92306 0.96500 0.96361 0.93039 0.85644 0.85318 0.93066 0.92934 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 2 C 0.05 0.67 5.46 37.16 0.20 0.87 16 3 O -0.31 -5.12 9.92 -34.21 -0.34 -5.46 16 4 C 0.10 1.78 6.70 -39.12 -0.26 1.52 16 5 C -0.17 -3.07 8.69 -39.46 -0.34 -3.42 16 6 C -0.05 -0.96 5.13 -104.61 -0.54 -1.50 16 7 C -0.08 -1.61 5.28 -27.88 -0.15 -1.76 16 8 C 0.03 0.76 4.96 -27.88 -0.14 0.63 16 9 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 13 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C -0.12 -2.05 9.69 -39.58 -0.38 -2.43 16 18 C -0.17 -2.62 9.04 -39.46 -0.36 -2.98 16 19 C 0.07 1.26 6.70 -39.12 -0.26 1.00 16 20 O -0.31 -4.84 10.28 -34.20 -0.35 -5.19 16 21 C 0.03 0.30 9.81 101.05 0.99 1.29 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.83 7.67 -51.93 -0.40 0.44 16 26 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 27 H 0.13 2.20 6.30 -52.49 -0.33 1.87 16 28 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.13 1.60 6.30 -52.49 -0.33 1.27 16 35 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 36 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -32.30 313.04 -7.12 -39.42 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.59 Total: -2.37 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.26 Total: -21.38 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.69 Total: -10.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.30 -7.12 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.931 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds