Wall clock time and date at job start Mon Mar 30 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 O 1.42901 * 109.46861 * 75.00430 * 3 2 1 5 5 C 1.35894 * 117.00118 * 74.99666 * 4 3 2 6 6 C 1.38758 * 120.05994 * 359.72778 * 5 4 3 7 7 C 1.38122 * 119.94648 * 179.73937 * 6 5 4 8 8 C 1.50697 * 119.96944 * 180.25094 * 7 6 5 9 9 C 1.38289 * 120.05519 * 0.51400 * 7 6 5 10 10 C 1.38251 * 120.11152 * 359.75891 * 9 7 6 11 11 C 1.38169 * 120.05366 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.02406 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47108 * 265.02146 * 12 11 10 14 14 C 1.50704 * 109.47239 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99623 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00407 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00203 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47117 * 60.00187 * 18 16 14 20 20 H 1.48503 * 109.47268 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47203 * 300.00353 * 18 16 14 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 25 25 H 1.08994 * 109.46755 * 194.99862 * 3 2 1 26 26 H 1.08996 * 109.47368 * 315.00017 * 3 2 1 27 27 H 1.08001 * 120.02477 * 359.97375 * 6 5 4 28 28 H 1.08996 * 109.47328 * 270.25532 * 8 7 6 29 29 H 1.08999 * 109.47226 * 30.26232 * 8 7 6 30 30 H 1.09003 * 109.46910 * 150.25664 * 8 7 6 31 31 H 1.07991 * 119.94301 * 179.74385 * 9 7 6 32 32 H 1.07995 * 119.96762 * 179.97438 * 10 9 7 33 33 H 1.08993 * 109.47137 * 25.02452 * 12 11 10 34 34 H 1.09004 * 109.46861 * 145.02477 * 12 11 10 35 35 H 1.08993 * 109.47372 * 300.00162 * 13 12 11 36 36 H 1.09004 * 109.46990 * 60.00410 * 13 12 11 37 37 H 0.97005 * 119.99566 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7187 1.4130 2.2668 6 6 3.6340 0.4135 1.9692 7 6 4.4835 -0.0581 2.9509 8 6 5.4816 -1.1396 2.6268 9 6 4.4152 0.4576 4.2322 10 6 3.5003 1.4496 4.5328 11 6 2.6521 1.9286 3.5529 12 6 1.6547 3.0094 3.8814 13 6 0.3066 2.3722 4.2243 14 6 -0.6910 3.4532 4.5522 15 1 -0.3933 4.4909 4.5189 16 6 -1.9840 3.1175 4.8937 17 7 -2.3465 1.8539 4.9337 18 14 -3.2207 4.4574 5.2994 19 1 -3.3807 5.3547 4.1271 20 1 -4.5291 3.8390 5.6323 21 1 -2.7352 5.2436 6.4619 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.0647 1.2337 -0.2659 26 1 1.4941 1.9330 -0.7266 27 1 3.6846 0.0073 0.9698 28 1 5.0286 -2.1157 2.7997 29 1 5.7799 -1.0574 1.5817 30 1 6.3584 -1.0278 3.2647 31 1 5.0775 0.0847 4.9994 32 1 3.4487 1.8504 5.5343 33 1 2.0116 3.5860 4.7347 34 1 1.5367 3.6685 3.0212 35 1 -0.0503 1.7957 3.3710 36 1 0.4246 1.7131 5.0845 37 1 -3.2561 1.6177 5.1744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:04 Heat of formation + Delta-G solvation = -83.017339 kcal Electronic energy + Delta-G solvation = -18389.335902 eV Core-core repulsion = 15517.307329 eV Total energy + Delta-G solvation = -2872.028573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06506 -38.04463 -36.17567 -34.32897 -32.50262 -30.17240 -29.61334 -27.66906 -26.73403 -25.13203 -24.00650 -21.78939 -21.36936 -20.01951 -17.58863 -16.67656 -16.44313 -16.20541 -15.27728 -14.99632 -14.46879 -14.41912 -13.81546 -13.61000 -13.20797 -13.05057 -12.74799 -12.57936 -12.18064 -11.91987 -11.70826 -11.34548 -11.14995 -11.02658 -10.84004 -10.82141 -10.56885 -10.39260 -9.93594 -9.69324 -9.48595 -9.01258 -8.27894 -8.23076 -7.57122 -5.93068 -3.95273 1.77276 1.86795 3.36511 3.40517 3.43293 3.56623 3.82875 4.20147 4.51153 5.01739 5.10838 5.11897 5.19535 5.42062 5.43382 5.49485 5.55341 5.70026 5.71005 5.74707 5.89826 6.00130 6.01857 6.08877 6.35733 6.46020 6.77224 6.81278 6.88310 6.97147 7.07621 7.16324 7.30745 7.77440 7.82961 7.95978 8.09356 8.49730 9.11686 9.67659 11.17981 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.006349 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.964450 B = 4408.938216 C = 5266.908362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.212 3.788 4 O -0.316 6.316 5 C 0.130 3.870 6 C -0.196 4.196 7 C -0.074 4.074 8 C -0.108 4.108 9 C -0.155 4.155 10 C -0.086 4.086 11 C -0.091 4.091 12 C -0.070 4.070 13 C 0.034 3.966 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -4.037 -8.517 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C 0.098 3.902 4 O -0.231 6.231 5 C 0.086 3.914 6 C -0.215 4.215 7 C -0.074 4.074 8 C -0.164 4.164 9 C -0.173 4.173 10 C -0.104 4.104 11 C -0.092 4.092 12 C -0.107 4.107 13 C -0.003 4.003 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.103 0.897 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.115 -4.175 -8.479 15.365 hybrid contribution -0.935 0.663 0.097 1.150 sum 11.180 -3.512 -8.382 14.408 Atomic orbital electron populations 1.22853 0.79750 1.02945 1.01240 1.87985 1.21459 1.28601 1.93790 1.24098 0.99033 0.83482 0.83593 1.86348 1.57351 1.59893 1.19527 1.18749 0.90024 0.93862 0.88780 1.21024 0.99495 1.00590 1.00371 1.19529 0.97005 0.97427 0.93446 1.20716 0.97218 0.96959 1.01554 1.20838 1.01168 0.99361 0.95960 1.20888 0.94564 0.96436 0.98561 1.19772 0.98664 1.00608 0.90141 1.20648 0.95286 0.94488 1.00284 1.19011 0.88875 0.95770 0.96641 1.21240 0.95274 0.93118 1.45974 0.92777 1.25008 0.98379 0.95259 0.95750 1.69977 1.18492 1.16104 1.48942 0.86685 0.80527 0.82082 0.78849 1.20305 1.21350 1.20268 0.89708 0.91988 0.94035 0.88734 0.88221 0.85731 0.91465 0.92071 0.91874 0.86608 0.85631 0.92587 0.92066 0.96381 0.96804 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.89 101.05 1.10 1.50 16 2 O -0.40 -6.10 10.17 -59.04 -0.60 -6.71 16 3 C 0.21 2.94 6.39 101.05 0.65 3.58 16 4 O -0.32 -5.84 9.33 -43.22 -0.40 -6.25 16 5 C 0.13 2.45 6.60 -39.21 -0.26 2.20 16 6 C -0.20 -3.20 8.43 -39.43 -0.33 -3.53 16 7 C -0.07 -1.11 5.88 -104.65 -0.62 -1.72 16 8 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 9 C -0.15 -2.39 9.70 -39.56 -0.38 -2.78 16 10 C -0.09 -1.52 9.68 -39.60 -0.38 -1.91 16 11 C -0.09 -1.83 5.15 -104.47 -0.54 -2.36 16 12 C -0.07 -1.56 5.01 -27.89 -0.14 -1.70 16 13 C 0.03 0.93 4.96 -27.88 -0.14 0.79 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 24 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 25 H 0.10 1.08 6.71 -51.93 -0.35 0.74 16 26 H 0.10 1.13 8.01 -51.93 -0.42 0.71 16 27 H 0.12 1.81 5.86 -52.49 -0.31 1.50 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.06 1.37 7.69 -51.93 -0.40 0.97 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -32.72 314.27 -7.29 -40.01 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.65 Total: -1.43 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.09 Total: -20.59 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.00 Total: -12.95 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.72 -7.29 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.009 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds