Wall clock time and date at job start Mon Mar 30 2020 18:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 O 1.42901 * 109.46861 * 75.00430 * 3 2 1 5 5 C 1.35894 * 117.00118 * 74.99666 * 4 3 2 6 6 C 1.38758 * 120.05994 * 359.72778 * 5 4 3 7 7 C 1.38122 * 119.94648 * 179.73937 * 6 5 4 8 8 C 1.50697 * 119.96944 * 180.25094 * 7 6 5 9 9 C 1.38289 * 120.05519 * 0.51400 * 7 6 5 10 10 C 1.38251 * 120.11152 * 359.75891 * 9 7 6 11 11 C 1.38169 * 120.05366 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.02406 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47108 * 265.02146 * 12 11 10 14 14 C 1.50704 * 109.47239 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99623 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00407 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00203 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47117 * 60.00187 * 18 16 14 20 20 H 1.48503 * 109.47268 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47203 * 300.00353 * 18 16 14 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 25 25 H 1.08994 * 109.46755 * 194.99862 * 3 2 1 26 26 H 1.08996 * 109.47368 * 315.00017 * 3 2 1 27 27 H 1.08001 * 120.02477 * 359.97375 * 6 5 4 28 28 H 1.08996 * 109.47328 * 270.25532 * 8 7 6 29 29 H 1.08999 * 109.47226 * 30.26232 * 8 7 6 30 30 H 1.09003 * 109.46910 * 150.25664 * 8 7 6 31 31 H 1.07991 * 119.94301 * 179.74385 * 9 7 6 32 32 H 1.07995 * 119.96762 * 179.97438 * 10 9 7 33 33 H 1.08993 * 109.47137 * 25.02452 * 12 11 10 34 34 H 1.09004 * 109.46861 * 145.02477 * 12 11 10 35 35 H 1.08993 * 109.47372 * 300.00162 * 13 12 11 36 36 H 1.09004 * 109.46990 * 60.00410 * 13 12 11 37 37 H 0.97005 * 119.99566 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7187 1.4130 2.2668 6 6 3.6340 0.4135 1.9692 7 6 4.4835 -0.0581 2.9509 8 6 5.4816 -1.1396 2.6268 9 6 4.4152 0.4576 4.2322 10 6 3.5003 1.4496 4.5328 11 6 2.6521 1.9286 3.5529 12 6 1.6547 3.0094 3.8814 13 6 0.3066 2.3722 4.2243 14 6 -0.6910 3.4532 4.5522 15 1 -0.3933 4.4909 4.5189 16 6 -1.9840 3.1175 4.8937 17 7 -2.3465 1.8539 4.9337 18 14 -3.2207 4.4574 5.2994 19 1 -3.3807 5.3547 4.1271 20 1 -4.5291 3.8390 5.6323 21 1 -2.7352 5.2436 6.4619 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.0647 1.2337 -0.2659 26 1 1.4941 1.9330 -0.7266 27 1 3.6846 0.0073 0.9698 28 1 5.0286 -2.1157 2.7997 29 1 5.7799 -1.0574 1.5817 30 1 6.3584 -1.0278 3.2647 31 1 5.0775 0.0847 4.9994 32 1 3.4487 1.8504 5.5343 33 1 2.0116 3.5860 4.7347 34 1 1.5367 3.6685 3.0212 35 1 -0.0503 1.7957 3.3710 36 1 0.4246 1.7131 5.0845 37 1 -3.2561 1.6177 5.1744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:03 Heat of formation + Delta-G solvation = -102.381053 kcal Electronic energy + Delta-G solvation = -18390.175576 eV Core-core repulsion = 15517.307329 eV Total energy + Delta-G solvation = -2872.868247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35998 -39.27879 -37.41675 -36.15199 -34.38103 -31.83737 -30.91607 -28.87532 -28.29020 -26.42149 -25.66855 -23.17367 -23.00920 -21.58449 -18.87138 -18.51901 -17.85910 -17.59671 -16.58069 -16.52711 -16.30770 -15.70034 -15.07475 -14.86283 -14.58064 -14.46226 -14.31668 -14.07631 -13.89872 -13.23245 -13.06508 -12.82276 -12.76311 -12.62399 -12.35596 -12.22935 -12.07837 -11.79211 -11.67023 -11.48281 -11.21023 -11.06033 -10.55247 -9.55918 -8.95447 -8.18752 -6.31465 0.44744 0.56163 1.38504 1.42599 1.50509 2.36651 2.40768 2.68810 2.92275 3.12945 3.88176 3.92841 4.06154 4.12051 4.24152 4.34940 4.40985 4.42860 4.53052 4.67960 4.78315 4.80988 4.82253 4.88530 4.90641 4.95907 5.17943 5.35906 5.39986 5.48330 5.54984 5.69577 5.77349 5.84674 5.86732 6.01722 6.23772 6.55146 6.84556 7.37321 8.92633 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.006349 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.964450 B = 4408.938216 C = 5266.908362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.201 3.799 4 O -0.345 6.345 5 C 0.116 3.884 6 C -0.201 4.201 7 C -0.067 4.067 8 C -0.106 4.106 9 C -0.156 4.156 10 C -0.094 4.094 11 C -0.134 4.134 12 C -0.052 4.052 13 C 0.047 3.953 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.099 0.901 23 H 0.017 0.983 24 H 0.069 0.931 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.061 0.939 34 H 0.052 0.948 35 H -0.017 1.017 36 H -0.016 1.016 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.600 -4.182 -9.114 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C 0.089 3.911 4 O -0.262 6.262 5 C 0.071 3.929 6 C -0.219 4.219 7 C -0.068 4.068 8 C -0.162 4.162 9 C -0.174 4.174 10 C -0.112 4.112 11 C -0.134 4.134 12 C -0.090 4.090 13 C 0.010 3.990 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.190 1.190 22 H 0.117 0.883 23 H 0.036 0.964 24 H 0.087 0.913 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.420 -4.317 -9.086 16.771 hybrid contribution -1.279 0.623 0.236 1.442 sum 12.141 -3.694 -8.850 15.472 Atomic orbital electron populations 1.22858 0.79674 1.03690 1.00364 1.87954 1.21639 1.29526 1.93666 1.24598 1.00974 0.83366 0.82172 1.86313 1.57870 1.60868 1.21118 1.18972 0.90706 0.94591 0.88608 1.21275 0.99029 0.99881 1.01726 1.20082 0.96613 0.97276 0.92791 1.20804 0.96783 0.95556 1.03095 1.21203 1.00734 0.98314 0.97162 1.21086 0.94718 0.97066 0.98351 1.19706 1.00035 1.01776 0.91932 1.20304 0.93600 0.95103 0.99962 1.18788 0.91601 0.94834 0.93789 1.21660 0.96315 0.93743 1.46435 0.92168 1.26009 1.00622 0.97926 0.95170 1.70128 1.19197 1.18543 1.49530 0.85473 0.77476 0.78771 0.79150 1.19143 1.20656 1.18974 0.88264 0.96401 0.91264 0.85996 0.85818 0.83915 0.90604 0.90520 0.89764 0.83392 0.85074 0.92033 0.92895 0.99884 0.99792 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.89 113.37 1.23 2.11 16 2 O -0.41 -12.27 10.17 -126.21 -1.28 -13.56 16 3 C 0.20 5.46 6.39 113.37 0.72 6.19 16 4 O -0.35 -13.19 9.33 -69.58 -0.65 -13.84 16 5 C 0.12 4.44 6.60 22.51 0.15 4.59 16 6 C -0.20 -6.29 8.43 22.37 0.19 -6.10 16 7 C -0.07 -1.87 5.88 -19.88 -0.12 -1.98 16 8 C -0.11 -1.96 10.01 71.23 0.71 -1.25 16 9 C -0.16 -4.53 9.70 22.28 0.22 -4.31 16 10 C -0.09 -3.34 9.68 22.26 0.22 -3.12 16 11 C -0.13 -5.55 5.15 -19.77 -0.10 -5.65 16 12 C -0.05 -2.46 5.01 29.85 0.15 -2.31 16 13 C 0.05 2.71 4.96 29.85 0.15 2.86 16 14 C -0.54 -32.72 9.11 25.60 0.23 -32.48 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 18 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 23 H 0.02 0.66 8.03 -2.39 -0.02 0.64 16 24 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 25 H 0.12 2.57 6.71 -2.39 -0.02 2.56 16 26 H 0.12 2.67 8.01 -2.39 -0.02 2.65 16 27 H 0.14 3.84 5.86 -2.91 -0.02 3.83 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 31 H 0.15 3.28 8.06 -2.92 -0.02 3.25 16 32 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.06 2.73 8.05 -2.39 -0.02 2.71 16 34 H 0.05 2.50 7.69 -2.38 -0.02 2.49 16 35 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 36 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 37 H 0.26 15.59 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -73.62 314.27 5.63 -68.00 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.04 Total: 11.62 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 4.21 Total: -40.98 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.83 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.93 Total: -27.40 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.62 5.63 -68.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.385 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds