Wall clock time and date at job start Mon Mar 30 2020 18:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99770 * 2 1 4 4 O 1.42899 * 109.46961 * 75.00704 * 3 2 1 5 5 C 1.35893 * 117.00392 * 74.99664 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38271 * 120.05803 * 359.41293 * 7 6 5 9 9 C 1.50698 * 119.94467 * 180.30180 * 8 7 6 10 10 C 1.52998 * 109.47439 * 270.30447 * 9 8 7 11 11 C 1.52999 * 109.47288 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47417 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99773 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00346 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00017 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00273 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47452 * 119.99983 * 16 14 12 19 19 H 1.48501 * 109.47397 * 240.00222 * 16 14 12 20 20 C 1.38259 * 120.10889 * 0.60974 * 8 7 6 21 21 C 1.38146 * 120.05909 * 359.67363 * 20 8 7 22 22 H 1.09000 * 109.46789 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47068 * 299.99057 * 1 2 3 24 24 H 1.08998 * 109.47420 * 59.99665 * 1 2 3 25 25 H 1.08993 * 109.47483 * 315.00209 * 3 2 1 26 26 H 1.09000 * 109.47196 * 195.00111 * 3 2 1 27 27 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 28 28 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 29 29 H 1.09000 * 109.47353 * 30.30435 * 9 8 7 30 30 H 1.09002 * 109.47057 * 150.30403 * 9 8 7 31 31 H 1.09004 * 109.47273 * 300.00469 * 10 9 8 32 32 H 1.09002 * 109.47032 * 59.99940 * 10 9 8 33 33 H 1.09000 * 109.47442 * 299.99949 * 11 10 9 34 34 H 1.09002 * 109.47120 * 60.00010 * 11 10 9 35 35 H 0.97001 * 120.00394 * 179.97438 * 15 14 12 36 36 H 1.08006 * 119.97147 * 179.69573 * 20 8 7 37 37 H 1.07993 * 120.03340 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8855 1.8823 1.3014 5 6 2.7188 1.4130 2.2668 6 6 2.6517 1.9280 3.5533 7 6 3.5042 1.4536 4.5312 8 6 4.4156 0.4578 4.2319 9 6 5.3398 -0.0627 5.3025 10 6 6.6256 0.7664 5.3136 11 6 7.5635 0.2385 6.4009 12 6 8.8303 1.0547 6.4114 13 1 8.9538 1.8689 5.7127 14 6 9.8311 0.7627 7.3137 15 7 9.6805 -0.2285 8.1648 16 14 11.4010 1.7750 7.3272 17 1 11.3226 2.8240 6.2790 18 1 11.5655 2.4157 8.6566 19 1 12.5628 0.8904 7.0568 20 6 4.4848 -0.0568 2.9506 21 6 3.6384 0.4183 1.9675 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.4941 1.9330 -0.7266 26 1 3.0648 1.2337 -0.2660 27 1 1.9366 2.7024 3.7888 28 1 3.4557 1.8577 5.5317 29 1 4.8502 0.0131 6.2734 30 1 5.5817 -1.1056 5.0980 31 1 7.1151 0.6907 4.3426 32 1 6.3836 1.8094 5.5180 33 1 7.0738 0.3146 7.3717 34 1 7.8056 -0.8046 6.1969 35 1 10.3847 -0.4342 8.7994 36 1 5.2008 -0.8312 2.7180 37 1 3.6925 0.0157 0.9668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:39 Heat of formation + Delta-G solvation = -85.025846 kcal Electronic energy + Delta-G solvation = -17354.432559 eV Core-core repulsion = 14482.316891 eV Total energy + Delta-G solvation = -2872.115669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31651 -38.41516 -36.73597 -34.36998 -32.36777 -30.89803 -29.82046 -28.01791 -26.60179 -25.31749 -23.36447 -22.49306 -20.96996 -19.93497 -18.47374 -17.16020 -16.90884 -16.26617 -15.65447 -15.18430 -14.79745 -14.42449 -14.06763 -13.93621 -13.78214 -13.35399 -13.09432 -12.60704 -12.33796 -12.05565 -11.59511 -11.38175 -11.25578 -11.17654 -10.88410 -10.67374 -10.51917 -10.42418 -10.36908 -9.61691 -9.28164 -9.02920 -8.82275 -8.31185 -7.88269 -5.96182 -3.98118 1.51845 1.59910 3.10163 3.33340 3.39231 3.40666 3.45332 3.96155 4.49507 4.63001 4.78898 4.96187 5.00211 5.05566 5.12677 5.27638 5.36863 5.39505 5.47802 5.59826 5.75146 5.91903 6.16599 6.21069 6.30568 6.46991 6.54832 6.55639 6.66271 6.91752 6.97645 7.02986 7.19922 7.42089 7.73284 7.88417 8.04972 8.48219 9.09576 9.65784 11.15198 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.049911 B = 0.003284 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.864362 B = 8524.560426 C = 8599.605638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.212 3.788 4 O -0.335 6.335 5 C 0.108 3.892 6 C -0.148 4.148 7 C -0.085 4.085 8 C -0.096 4.096 9 C -0.082 4.082 10 C -0.103 4.103 11 C 0.019 3.981 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.083 4.083 21 C -0.191 4.191 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.124 0.876 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.070 1.865 -15.372 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.099 3.901 4 O -0.252 6.252 5 C 0.064 3.936 6 C -0.167 4.167 7 C -0.103 4.103 8 C -0.096 4.096 9 C -0.119 4.119 10 C -0.140 4.140 11 C -0.018 4.018 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.101 4.101 21 C -0.210 4.210 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.019 1.754 -15.227 23.656 hybrid contribution 0.842 0.582 -0.099 1.028 sum -17.177 2.336 -15.326 23.138 Atomic orbital electron populations 1.22810 0.80335 1.03026 1.00459 1.88065 1.20974 1.28727 1.93676 1.24147 0.99796 0.83204 0.82984 1.86178 1.58107 1.60734 1.20134 1.18858 0.91028 0.94931 0.88784 1.20381 1.02607 1.03127 0.90538 1.20907 0.94454 0.95985 0.98930 1.20144 0.97116 0.96859 0.95479 1.20743 0.95481 0.99941 0.95740 1.21626 0.93535 0.98184 1.00695 1.19132 0.93232 0.96353 0.93042 1.21321 1.01224 1.15685 1.17403 0.92699 1.25031 0.98594 0.95326 0.95610 1.69977 1.33651 1.29272 1.20732 0.86559 0.83493 0.80267 0.77831 1.19749 1.21041 1.21042 1.20902 0.97752 0.99261 0.92223 1.21212 0.99005 1.00113 1.00677 0.89490 0.93208 0.93821 0.88051 0.88061 0.85746 0.85364 0.91487 0.91526 0.93409 0.93365 0.96599 0.96620 0.93115 0.85772 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.39 -4.03 10.19 -59.04 -0.60 -4.64 16 3 C 0.21 1.90 6.39 101.05 0.65 2.55 16 4 O -0.34 -4.05 10.19 -43.22 -0.44 -4.49 16 5 C 0.11 1.48 6.63 -39.21 -0.26 1.22 16 6 C -0.15 -2.03 9.99 -39.43 -0.39 -2.42 16 7 C -0.08 -1.24 9.69 -39.61 -0.38 -1.62 16 8 C -0.10 -1.52 5.13 -104.60 -0.54 -2.05 16 9 C -0.08 -1.43 5.34 -27.89 -0.15 -1.58 16 10 C -0.10 -2.17 5.14 -26.73 -0.14 -2.31 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 C -0.08 -1.23 9.69 -39.61 -0.38 -1.62 16 21 C -0.19 -2.61 8.78 -39.43 -0.35 -2.96 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.40 8.03 -51.93 -0.42 -0.01 16 24 H 0.04 0.24 8.11 -51.93 -0.42 -0.18 16 25 H 0.10 0.61 8.01 -51.93 -0.42 0.20 16 26 H 0.10 0.81 6.70 -51.93 -0.35 0.47 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.13 1.51 5.86 -52.49 -0.31 1.21 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -32.23 315.56 -7.64 -39.87 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.67 Total: -2.97 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.40 Total: -22.89 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.04 Total: -9.12 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.23 -7.64 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.152 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds