Wall clock time and date at job start Mon Mar 30 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99580 * 2 1 4 4 O 1.42902 * 109.47035 * 74.99686 * 3 2 1 5 5 C 1.35899 * 116.99769 * 75.00268 * 4 3 2 6 6 C 1.38749 * 120.05764 * 0.24762 * 5 4 3 7 7 C 1.38124 * 119.94616 * 180.32030 * 6 5 4 8 8 C 1.38294 * 120.04986 * 359.68533 * 7 6 5 9 9 C 1.38236 * 120.11395 * 0.02562 * 8 7 6 10 10 C 1.38159 * 120.05848 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.03133 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47212 * 265.00010 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47114 * 60.00582 * 18 16 14 20 20 H 1.48503 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00322 * 18 16 14 22 22 H 1.08997 * 109.47575 * 299.99602 * 1 2 3 23 23 H 1.08999 * 109.46929 * 60.00748 * 1 2 3 24 24 H 1.08998 * 109.46717 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46995 * 314.99921 * 3 2 1 26 26 H 1.08993 * 109.47432 * 194.99821 * 3 2 1 27 27 H 1.08002 * 120.03011 * 0.02562 * 6 5 4 28 28 H 1.07994 * 119.97736 * 179.70050 * 7 6 5 29 29 H 1.08004 * 119.94098 * 180.02562 * 8 7 6 30 30 H 1.08003 * 119.97210 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47060 * 25.00065 * 11 10 9 32 32 H 1.09001 * 109.47380 * 145.00153 * 11 10 9 33 33 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 34 34 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 35 35 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 36 36 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 37 37 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7186 1.4133 2.2669 6 6 3.6413 0.4215 1.9666 7 6 4.4827 -0.0584 2.9513 8 6 4.4104 0.4534 4.2340 9 6 3.4961 1.4458 4.5342 10 6 2.6515 1.9285 3.5531 11 6 1.6546 3.0099 3.8812 12 6 0.3044 2.3739 4.2178 13 6 -0.7075 3.4717 4.5515 14 6 -2.0376 2.8453 4.8824 15 1 -2.1498 1.7714 4.8576 16 6 -3.1110 3.6429 5.2178 17 7 -2.9743 4.9506 5.2485 18 14 -4.7599 2.8664 5.6273 19 1 -4.6051 1.9633 6.7960 20 1 -5.7421 3.9320 5.9514 21 1 -5.2434 2.0866 4.4598 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4941 1.9330 -0.7267 26 1 3.0648 1.2339 -0.2659 27 1 3.6984 0.0217 0.9650 28 1 5.1977 -0.8338 2.7193 29 1 5.0694 0.0771 5.0025 30 1 3.4418 1.8442 5.5366 31 1 2.0095 3.5836 4.7374 32 1 1.5405 3.6716 3.0225 33 1 -0.0505 1.8002 3.3616 34 1 0.4184 1.7121 5.0764 35 1 -0.3524 4.0451 5.4078 36 1 -0.8217 4.1337 3.6931 37 1 -3.7295 5.5118 5.4842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:42 Heat of formation + Delta-G solvation = -101.939525 kcal Electronic energy + Delta-G solvation = -18135.461148 eV Core-core repulsion = 15262.612047 eV Total energy + Delta-G solvation = -2872.849101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33551 -39.19214 -37.31857 -36.46616 -34.53633 -31.94288 -30.91192 -28.75537 -28.31525 -26.23663 -25.40326 -22.94739 -22.64580 -21.65026 -19.22058 -18.46675 -17.86158 -17.67380 -16.70042 -16.54969 -16.43212 -15.82671 -15.19512 -14.99368 -14.97011 -14.55526 -14.22483 -14.03835 -13.77648 -13.16311 -13.05367 -12.71398 -12.60873 -12.52331 -12.34555 -12.25161 -12.17142 -11.80105 -11.44620 -11.32410 -11.19815 -11.03963 -10.55613 -9.69819 -9.06318 -8.20020 -6.31851 0.44333 0.54984 1.38134 1.41799 1.49939 2.34139 2.40386 2.69891 2.93530 3.12036 3.86488 3.92537 4.05661 4.14809 4.24239 4.32810 4.43425 4.44686 4.53142 4.57753 4.59518 4.71421 4.81396 4.87625 4.98248 5.15628 5.20666 5.27724 5.45368 5.51813 5.56746 5.65977 5.76460 5.82822 5.84644 5.97973 6.25400 6.51678 6.83886 7.36973 8.91570 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.005504 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.902719 B = 5085.794811 C = 5893.764325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.202 3.798 4 O -0.346 6.346 5 C 0.112 3.888 6 C -0.200 4.200 7 C -0.092 4.092 8 C -0.154 4.154 9 C -0.095 4.095 10 C -0.127 4.127 11 C -0.063 4.063 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.267 1.267 22 H 0.026 0.974 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.044 0.956 35 H -0.007 1.007 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.420 -10.297 -9.453 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C 0.089 3.911 4 O -0.262 6.262 5 C 0.068 3.932 6 C -0.218 4.218 7 C -0.110 4.110 8 C -0.172 4.172 9 C -0.113 4.113 10 C -0.128 4.128 11 C -0.100 4.100 12 C -0.118 4.118 13 C -0.010 4.010 14 C -0.583 4.583 15 H 0.073 0.927 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.192 1.192 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.012 0.988 36 H 0.007 0.993 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.285 -10.159 -9.425 19.902 hybrid contribution -1.223 0.244 0.136 1.255 sum 13.061 -9.915 -9.288 18.846 Atomic orbital electron populations 1.22909 0.79556 1.03834 1.00633 1.87972 1.21771 1.29363 1.93661 1.24584 1.01024 0.83379 0.82089 1.86300 1.57840 1.60950 1.21138 1.19004 0.90921 0.94685 0.88599 1.21449 0.98718 0.99648 1.02005 1.21285 0.98136 0.99127 0.92413 1.21359 1.00095 0.97910 0.97799 1.21143 0.94701 0.96913 0.98549 1.19524 1.00233 1.01144 0.91868 1.20356 0.93201 0.95539 1.00938 1.21291 0.93677 0.97816 0.99017 1.18994 0.93512 0.93962 0.94511 1.21647 0.96740 0.93358 1.46597 0.92666 1.25986 1.03225 0.95301 0.95180 1.70095 1.32717 1.04864 1.49614 0.85506 0.78331 0.78141 0.79109 1.19136 1.20468 1.19204 0.95507 0.91708 0.88163 0.85997 0.86065 0.83908 0.82957 0.83298 0.84722 0.91340 0.92470 0.94462 0.93673 0.98816 0.99295 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.89 113.37 1.23 1.86 16 2 O -0.41 -10.20 10.20 -126.21 -1.29 -11.49 16 3 C 0.20 4.53 6.39 113.37 0.72 5.26 16 4 O -0.35 -11.02 9.34 -69.65 -0.65 -11.67 16 5 C 0.11 3.55 6.60 22.51 0.15 3.69 16 6 C -0.20 -5.07 8.78 22.36 0.20 -4.88 16 7 C -0.09 -2.00 10.04 22.26 0.22 -1.77 16 8 C -0.15 -3.50 10.04 22.28 0.22 -3.28 16 9 C -0.10 -2.69 9.68 22.25 0.22 -2.48 16 10 C -0.13 -4.28 5.15 -19.77 -0.10 -4.38 16 11 C -0.06 -2.46 5.06 29.85 0.15 -2.30 16 12 C -0.08 -3.71 5.13 30.59 0.16 -3.55 16 13 C 0.03 1.54 4.97 29.84 0.15 1.69 16 14 C -0.55 -32.73 9.11 25.60 0.23 -32.49 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 18 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H 0.03 0.79 8.03 -2.39 -0.02 0.77 16 23 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.12 2.17 8.01 -2.38 -0.02 2.15 16 26 H 0.12 2.06 6.69 -2.39 -0.02 2.05 16 27 H 0.14 3.07 5.86 -2.91 -0.02 3.05 16 28 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 32 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.37 314.39 5.42 -65.95 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.03 Total: 9.97 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 4.02 Total: -42.13 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.28 Total: -58.09 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.94 Total: -23.16 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.37 5.42 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.993 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds