Wall clock time and date at job start Mon Mar 30 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 116.99890 * 2 1 4 4 C 1.38752 * 120.05896 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94897 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97406 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.47269 * 269.97964 * 6 5 4 8 8 C 1.38290 * 120.05322 * 359.97438 * 5 4 3 9 9 C 1.38251 * 120.11123 * 0.03797 * 8 5 4 10 10 C 1.38163 * 120.05527 * 0.24024 * 9 8 5 11 11 C 1.50693 * 120.02868 * 179.74173 * 10 9 8 12 12 C 1.53002 * 109.47274 * 264.99602 * 11 10 9 13 13 C 1.52998 * 109.47409 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46870 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00323 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99747 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00064 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99972 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46933 * 60.00124 * 18 16 14 20 20 H 1.48496 * 109.46808 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46973 * 299.99925 * 18 16 14 22 22 H 1.09006 * 109.47330 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47261 * 300.00252 * 1 2 3 24 24 H 1.09004 * 109.47116 * 60.00474 * 1 2 3 25 25 H 1.07998 * 120.02540 * 0.04695 * 4 3 2 26 26 H 1.08995 * 109.47386 * 29.98178 * 6 5 4 27 27 H 1.09009 * 109.46901 * 149.98041 * 6 5 4 28 28 H 0.96698 * 113.99681 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.94582 * 180.02562 * 8 5 4 30 30 H 1.08002 * 119.96904 * 179.97438 * 9 8 5 31 31 H 1.09004 * 109.47408 * 24.99385 * 11 10 9 32 32 H 1.09000 * 109.47853 * 144.99650 * 11 10 9 33 33 H 1.08995 * 109.46947 * 300.00194 * 12 11 10 34 34 H 1.09010 * 109.47025 * 59.99655 * 12 11 10 35 35 H 1.09005 * 109.46866 * 299.99725 * 13 12 11 36 36 H 1.08998 * 109.47025 * 60.00137 * 13 12 11 37 37 H 0.96996 * 120.00413 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 1.1019 4.8698 -0.0011 7 8 0.8429 5.2696 -1.3484 8 6 3.3019 3.6758 -0.0005 9 6 4.0560 2.5171 -0.0003 10 6 3.4311 1.2848 -0.0055 11 6 4.2537 0.0222 -0.0111 12 6 4.4265 -0.4676 -1.4503 13 6 5.2621 -1.7492 -1.4560 14 6 5.4328 -2.2312 -2.8737 15 1 4.9893 -1.6790 -3.6889 16 6 6.1553 -3.3772 -3.1299 17 7 6.6959 -4.0495 -2.1372 18 14 6.3663 -3.9751 -4.8870 19 1 7.0557 -2.9303 -5.6859 20 1 7.1785 -5.2182 -4.8926 21 1 5.0329 -4.2517 -5.4792 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3203 -0.0002 26 1 0.1574 4.6913 0.5128 27 1 1.6516 5.6585 0.5127 28 1 0.3194 6.0791 -1.4246 29 1 3.7922 4.6381 -0.0005 30 1 5.1344 2.5752 -0.0003 31 1 5.2325 0.2243 0.4239 32 1 3.7468 -0.7444 0.5751 33 1 3.4477 -0.6697 -1.8853 34 1 4.9334 0.2990 -2.0366 35 1 6.2410 -1.5466 -1.0212 36 1 4.7556 -2.5158 -0.8697 37 1 7.2038 -4.8559 -2.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250067169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:55 Heat of formation + Delta-G solvation = -84.921202 kcal Electronic energy + Delta-G solvation = -17747.228317 eV Core-core repulsion = 14875.117186 eV Total energy + Delta-G solvation = -2872.111131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20945 -37.81994 -36.60871 -34.65344 -32.70444 -30.79501 -30.00164 -27.70573 -27.37120 -25.07408 -22.89066 -22.13824 -20.85093 -19.90631 -17.68384 -17.46005 -16.41681 -16.18118 -15.59678 -15.33942 -14.57717 -14.50061 -14.37012 -13.92097 -13.46676 -13.12218 -12.80814 -12.48468 -12.07251 -11.82570 -11.66670 -11.57076 -11.03181 -10.98546 -10.78609 -10.62629 -10.57621 -10.34178 -10.30509 -9.51694 -9.25329 -9.02908 -8.58855 -8.25173 -7.89594 -5.90769 -3.92320 1.35471 1.56790 3.39468 3.42945 3.43816 3.46328 3.72548 4.33325 4.53827 4.75906 4.83244 4.96629 5.08538 5.16161 5.19270 5.24112 5.38791 5.44653 5.52860 5.62229 5.76861 5.92545 6.03502 6.25439 6.39705 6.52428 6.57829 6.64724 6.91848 7.00667 7.07344 7.28690 7.38024 7.56939 7.79314 7.96549 8.11034 8.54565 9.14802 9.70892 11.20645 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.004291 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.572356 B = 6523.957016 C = 6713.422192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.304 6.304 3 C 0.125 3.875 4 C -0.188 4.188 5 C -0.075 4.075 6 C 0.121 3.879 7 O -0.566 6.566 8 C -0.135 4.135 9 C -0.087 4.087 10 C -0.087 4.087 11 C -0.076 4.076 12 C -0.100 4.100 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.124 0.876 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.377 0.623 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 16.853 7.393 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.079 3.921 4 C -0.207 4.207 5 C -0.075 4.075 6 C 0.043 3.957 7 O -0.371 6.371 8 C -0.153 4.153 9 C -0.105 4.105 10 C -0.088 4.088 11 C -0.114 4.114 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.118 0.882 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.142 0.858 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.224 0.776 29 H 0.138 0.862 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.502 15.950 7.309 21.544 hybrid contribution -0.477 0.269 -0.840 1.002 sum -12.979 16.220 6.470 21.757 Atomic orbital electron populations 1.23031 0.79057 1.03891 1.00794 1.86192 1.20680 1.26374 1.88435 1.18840 0.91933 0.84088 0.97219 1.21000 0.99574 0.91772 1.08328 1.19234 0.93706 0.93140 1.01405 1.20948 0.97331 0.93706 0.83686 1.86625 1.76653 1.47399 1.26435 1.20868 0.92883 0.98393 1.03147 1.20933 1.00078 0.90856 0.98650 1.19661 0.90720 0.96806 1.01568 1.20643 0.97813 0.92731 1.00184 1.21579 1.00444 0.99364 0.92374 1.19106 0.94517 0.91104 0.96806 1.21255 1.32342 1.08882 0.93094 0.92850 1.25016 0.95806 0.96757 0.96894 1.69958 1.35375 1.17535 1.30847 0.86681 0.78102 0.78033 0.85319 1.20286 1.21332 1.20297 0.88230 0.93152 0.92866 0.85817 0.93121 0.92773 0.77642 0.86186 0.85104 0.91542 0.91016 0.93245 0.93614 0.96692 0.96569 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.92 9.63 -19.42 -0.19 -5.11 16 3 C 0.12 2.02 6.66 -39.21 -0.26 1.75 16 4 C -0.19 -2.61 8.69 -39.43 -0.34 -2.95 16 5 C -0.07 -0.98 5.51 -104.65 -0.58 -1.55 16 6 C 0.12 1.17 7.17 36.00 0.26 1.42 16 7 O -0.57 -5.93 13.64 -35.23 -0.48 -6.41 16 8 C -0.13 -1.79 9.70 -39.56 -0.38 -2.18 16 9 C -0.09 -1.29 9.68 -39.60 -0.38 -1.68 16 10 C -0.09 -1.47 5.15 -104.48 -0.54 -2.01 16 11 C -0.08 -1.45 5.07 -27.88 -0.14 -1.59 16 12 C -0.10 -2.25 5.13 -26.73 -0.14 -2.39 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.36 9.11 -34.44 -0.31 -15.68 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 18 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 26 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.09 -51.92 -0.42 0.00 16 28 H 0.38 1.88 9.12 45.56 0.42 2.30 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.07 1.18 8.05 -51.93 -0.42 0.77 16 32 H 0.07 1.39 7.68 -51.93 -0.40 0.99 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -34.64 315.05 -7.14 -41.78 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.87 Total: -1.77 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -2.06 Total: -23.52 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.07 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.67 Total: -11.52 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.64 -7.14 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.146 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds