Wall clock time and date at job start Mon Mar 30 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 O 1.42896 * 109.47047 * 120.00414 * 2 1 3 5 5 C 1.42901 * 114.00080 * 90.00251 * 4 2 1 6 6 C 1.53006 * 109.46875 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.38127 * 120.03458 * 265.00104 * 7 6 5 9 9 C 1.38281 * 120.07020 * 179.97438 * 8 7 6 10 10 C 1.38325 * 120.13446 * 0.04441 * 9 8 7 11 11 C 1.38078 * 120.07219 * 359.97438 * 10 9 8 12 12 C 1.38856 * 120.03366 * 84.72606 * 7 6 5 13 13 O 1.35750 * 120.06931 * 359.97438 * 12 7 6 14 14 C 1.34834 * 116.99697 * 174.12666 * 13 12 7 15 15 H 1.07997 * 120.00310 * 5.07261 * 14 13 12 16 16 C 1.38656 * 119.99678 * 185.06421 * 14 13 12 17 17 N 1.31557 * 120.00133 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00132 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99474 * 18 16 14 20 20 H 1.48493 * 109.47037 * 209.99678 * 18 16 14 21 21 H 1.48499 * 109.46776 * 329.99999 * 18 16 14 22 22 H 1.09002 * 109.47319 * 59.99917 * 1 2 3 23 23 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47137 * 299.99881 * 1 2 3 25 25 H 1.09009 * 109.46899 * 240.00138 * 2 1 3 26 26 H 1.09002 * 109.46749 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47097 * 300.00219 * 3 2 1 28 28 H 1.08996 * 109.47023 * 60.00049 * 3 2 1 29 29 H 1.08997 * 109.47464 * 59.99686 * 5 4 2 30 30 H 1.08995 * 109.46624 * 299.99379 * 5 4 2 31 31 H 1.09007 * 109.46987 * 59.99814 * 6 5 4 32 32 H 1.08991 * 109.47102 * 300.00087 * 6 5 4 33 33 H 1.08000 * 119.96676 * 359.97438 * 8 7 6 34 34 H 1.07991 * 119.93130 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.96531 * 179.97438 * 10 9 8 36 36 H 1.08001 * 120.03333 * 179.97438 * 11 10 9 37 37 H 0.96995 * 119.99912 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9884 6 6 2.7091 -2.6926 2.2941 7 6 2.9129 -4.1738 2.1063 8 6 1.9152 -5.0597 2.4636 9 6 2.1012 -6.4191 2.2911 10 6 3.2866 -6.8961 1.7613 11 6 4.2879 -6.0156 1.4025 12 6 4.1016 -4.6492 1.5685 13 8 5.0816 -3.7806 1.2108 14 6 6.2541 -4.3121 0.8099 15 1 6.3544 -5.3824 0.7058 16 6 7.3312 -3.4845 0.5312 17 7 8.4754 -4.0031 0.1407 18 14 7.1579 -1.6333 0.7118 19 1 7.5271 -1.2340 2.0936 20 1 8.0568 -0.9553 -0.2564 21 1 5.7518 -1.2392 0.4417 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.9319 -2.2467 0.1985 30 1 1.2538 -2.5433 0.7124 31 1 1.9775 -2.5241 3.0844 32 1 3.6554 -2.2273 2.5698 33 1 0.9888 -4.6904 2.8781 34 1 1.3195 -7.1097 2.5708 35 1 3.4291 -7.9583 1.6282 36 1 5.2134 -6.3888 0.9894 37 1 9.2287 -3.4241 -0.0546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250407876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:08 Heat of formation + Delta-G solvation = -65.898818 kcal Electronic energy + Delta-G solvation = -18293.537857 eV Core-core repulsion = 15422.251599 eV Total energy + Delta-G solvation = -2871.286258 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39896 -38.11268 -36.58417 -33.62919 -32.40269 -31.75829 -29.26104 -27.80588 -27.18149 -25.26449 -23.05334 -21.47529 -21.20371 -20.36751 -17.85039 -17.14121 -16.59062 -15.53949 -15.01143 -14.75252 -14.67845 -14.12306 -13.75561 -13.70653 -13.40787 -12.84649 -12.65170 -12.34587 -12.24103 -12.20713 -12.10834 -11.65426 -11.57775 -11.10529 -10.94472 -10.79594 -10.70780 -10.54945 -10.45780 -10.15528 -9.39733 -9.27272 -8.88197 -8.15612 -7.37030 -6.42896 -4.09667 2.02829 2.25817 3.21915 3.26922 3.42489 3.88227 4.23509 4.48352 4.82801 4.94025 5.06704 5.08581 5.24729 5.40608 5.49007 5.55255 5.59626 5.67335 5.72409 5.78526 5.82819 5.88526 5.93583 6.01438 6.17556 6.20152 6.23929 6.41201 6.47876 6.58523 6.82840 7.13715 7.18051 7.29918 7.52174 7.60549 7.77933 8.02807 8.92615 9.54327 10.64597 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.009135 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.965234 B = 3064.409054 C = 4910.368294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.385 6.385 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.160 4.160 8 C -0.073 4.073 9 C -0.206 4.206 10 C -0.077 4.077 11 C -0.221 4.221 12 C 0.164 3.836 13 O -0.211 6.211 14 C -0.390 4.390 15 H 0.106 0.894 16 C 0.065 3.935 17 N -0.879 5.879 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.255 1.255 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 4.518 0.612 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.305 6.305 5 C -0.007 4.007 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.092 4.092 9 C -0.225 4.225 10 C -0.095 4.095 11 C -0.240 4.240 12 C 0.111 3.889 13 O -0.116 6.116 14 C -0.466 4.466 15 H 0.123 0.877 16 C -0.138 4.138 17 N -0.517 5.517 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.179 1.179 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.151 0.849 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.027 4.913 0.697 13.940 hybrid contribution 0.144 0.337 -0.287 0.465 sum -12.883 5.250 0.410 13.918 Atomic orbital electron populations 1.22288 0.96377 1.02206 1.02128 1.22029 0.93264 0.93798 0.88855 1.21857 1.02063 0.94715 1.02027 1.87879 1.86565 1.20916 1.35136 1.22573 0.98989 0.80213 0.98883 1.20103 1.02110 0.91286 0.96018 1.18788 0.94171 0.94669 1.08508 1.20579 0.96984 0.92873 0.98728 1.20643 0.98523 0.95032 1.08289 1.20820 0.93221 0.98504 0.96966 1.21290 1.01418 0.92867 1.08391 1.18935 0.88652 0.88993 0.92303 1.83584 1.21177 1.33623 1.73221 1.20767 0.85291 0.95264 1.45260 0.87662 1.24443 0.93583 1.00162 0.95604 1.69643 1.01696 1.36649 1.43692 0.86263 0.79447 0.83344 0.78471 1.19804 1.20856 1.17907 0.92002 0.92525 0.91971 0.92317 0.91918 0.91585 0.91966 0.92718 0.93844 0.91368 0.90347 0.86901 0.87459 0.87263 0.84920 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.53 37.16 0.35 -1.57 16 2 C 0.08 1.08 3.34 -26.73 -0.09 0.99 16 3 C -0.15 -1.79 9.56 37.16 0.36 -1.44 16 4 O -0.39 -6.57 9.99 -35.23 -0.35 -6.92 16 5 C 0.07 1.22 5.73 37.16 0.21 1.43 16 6 C -0.06 -1.06 5.43 -27.88 -0.15 -1.21 16 7 C -0.16 -3.14 5.15 -104.44 -0.54 -3.68 16 8 C -0.07 -1.25 9.68 -39.61 -0.38 -1.63 16 9 C -0.21 -3.43 10.04 -39.53 -0.40 -3.83 16 10 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 11 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 12 C 0.16 3.73 6.62 -39.11 -0.26 3.48 16 13 O -0.21 -5.46 7.73 0.04 0.00 -5.46 16 14 C -0.39 -10.89 9.95 30.89 0.31 -10.58 16 15 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 16 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 17 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 18 Si 0.90 21.76 28.62 -169.99 -4.86 16.90 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.81 7.79 -51.92 -0.40 0.41 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.07 1.09 8.05 -51.92 -0.42 0.67 16 32 H 0.08 1.59 7.71 -51.93 -0.40 1.19 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 37 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -29.19 313.00 -6.73 -35.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.56 Total: 2.61 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.44 Total: -23.20 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.77 Total: -24.56 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.35 Total: -12.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.19 -6.73 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250407876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds