Wall clock time and date at job start Mon Mar 30 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 O 1.42896 * 109.47047 * 120.00414 * 2 1 3 5 5 C 1.42901 * 114.00080 * 90.00251 * 4 2 1 6 6 C 1.53006 * 109.46875 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.38127 * 120.03458 * 265.00104 * 7 6 5 9 9 C 1.38281 * 120.07020 * 179.97438 * 8 7 6 10 10 C 1.38325 * 120.13446 * 0.04441 * 9 8 7 11 11 C 1.38078 * 120.07219 * 359.97438 * 10 9 8 12 12 C 1.38856 * 120.03366 * 84.72606 * 7 6 5 13 13 O 1.35750 * 120.06931 * 359.97438 * 12 7 6 14 14 C 1.34834 * 116.99697 * 174.12666 * 13 12 7 15 15 H 1.07997 * 120.00310 * 5.07261 * 14 13 12 16 16 C 1.38656 * 119.99678 * 185.06421 * 14 13 12 17 17 N 1.31557 * 120.00133 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00132 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99474 * 18 16 14 20 20 H 1.48493 * 109.47037 * 209.99678 * 18 16 14 21 21 H 1.48499 * 109.46776 * 329.99999 * 18 16 14 22 22 H 1.09002 * 109.47319 * 59.99917 * 1 2 3 23 23 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47137 * 299.99881 * 1 2 3 25 25 H 1.09009 * 109.46899 * 240.00138 * 2 1 3 26 26 H 1.09002 * 109.46749 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47097 * 300.00219 * 3 2 1 28 28 H 1.08996 * 109.47023 * 60.00049 * 3 2 1 29 29 H 1.08997 * 109.47464 * 59.99686 * 5 4 2 30 30 H 1.08995 * 109.46624 * 299.99379 * 5 4 2 31 31 H 1.09007 * 109.46987 * 59.99814 * 6 5 4 32 32 H 1.08991 * 109.47102 * 300.00087 * 6 5 4 33 33 H 1.08000 * 119.96676 * 359.97438 * 8 7 6 34 34 H 1.07991 * 119.93130 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.96531 * 179.97438 * 10 9 8 36 36 H 1.08001 * 120.03333 * 179.97438 * 11 10 9 37 37 H 0.96995 * 119.99912 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9884 6 6 2.7091 -2.6926 2.2941 7 6 2.9129 -4.1738 2.1063 8 6 1.9152 -5.0597 2.4636 9 6 2.1012 -6.4191 2.2911 10 6 3.2866 -6.8961 1.7613 11 6 4.2879 -6.0156 1.4025 12 6 4.1016 -4.6492 1.5685 13 8 5.0816 -3.7806 1.2108 14 6 6.2541 -4.3121 0.8099 15 1 6.3544 -5.3824 0.7058 16 6 7.3312 -3.4845 0.5312 17 7 8.4754 -4.0031 0.1407 18 14 7.1579 -1.6333 0.7118 19 1 7.5271 -1.2340 2.0936 20 1 8.0568 -0.9553 -0.2564 21 1 5.7518 -1.2392 0.4417 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.9319 -2.2467 0.1985 30 1 1.2538 -2.5433 0.7124 31 1 1.9775 -2.5241 3.0844 32 1 3.6554 -2.2273 2.5698 33 1 0.9888 -4.6904 2.8781 34 1 1.3195 -7.1097 2.5708 35 1 3.4291 -7.9583 1.6282 36 1 5.2134 -6.3888 0.9894 37 1 9.2287 -3.4241 -0.0546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250407876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:08 Heat of formation + Delta-G solvation = -82.546611 kcal Electronic energy + Delta-G solvation = -18294.259759 eV Core-core repulsion = 15422.251599 eV Total energy + Delta-G solvation = -2872.008161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05023 -39.36460 -38.26038 -34.95351 -34.42396 -33.02818 -30.83025 -29.27666 -28.10862 -27.23028 -24.48399 -23.13832 -22.31278 -21.85106 -19.76843 -18.88890 -17.83896 -16.97798 -16.66398 -16.13655 -16.01846 -15.77887 -15.45981 -15.31011 -14.71416 -14.31823 -14.14913 -14.01317 -13.72231 -13.37197 -13.13614 -13.10759 -12.77569 -12.64236 -12.47967 -12.32705 -12.24974 -11.97374 -11.89972 -11.61170 -11.26218 -10.93698 -10.51831 -9.66057 -9.04239 -8.52351 -6.23186 0.50907 0.70148 1.26897 1.30602 1.48376 2.24397 2.63880 2.79735 3.08315 3.16529 3.93968 3.94648 4.07249 4.11081 4.24565 4.25623 4.32856 4.33795 4.50636 4.60294 4.64752 4.73973 4.80105 4.88999 4.90802 4.93975 5.01007 5.10078 5.24173 5.31619 5.33353 5.45875 5.63376 5.75217 5.81289 5.90989 6.27461 6.30149 6.83248 7.59323 8.59482 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.009135 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.965234 B = 3064.409054 C = 4910.368294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 C -0.148 4.148 4 O -0.402 6.402 5 C 0.079 3.921 6 C -0.056 4.056 7 C -0.159 4.159 8 C -0.068 4.068 9 C -0.180 4.180 10 C -0.079 4.079 11 C -0.242 4.242 12 C 0.122 3.878 13 O -0.238 6.238 14 C -0.396 4.396 15 H 0.082 0.918 16 C 0.015 3.985 17 N -0.922 5.922 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.264 1.264 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 4.849 1.538 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.007 3.993 3 C -0.205 4.205 4 O -0.323 6.323 5 C 0.002 3.998 6 C -0.094 4.094 7 C -0.160 4.160 8 C -0.085 4.085 9 C -0.199 4.199 10 C -0.097 4.097 11 C -0.261 4.261 12 C 0.073 3.927 13 O -0.145 6.145 14 C -0.472 4.472 15 H 0.099 0.901 16 C -0.183 4.183 17 N -0.563 5.563 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.192 1.192 21 H -0.188 1.188 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.793 5.226 1.632 17.663 hybrid contribution 1.017 0.048 -0.494 1.132 sum -15.776 5.274 1.138 16.673 Atomic orbital electron populations 1.22220 0.93918 1.02589 1.03457 1.22371 0.95287 0.94204 0.87486 1.21886 1.00920 0.93992 1.03683 1.87848 1.87057 1.20533 1.36831 1.22384 0.98995 0.81053 0.97332 1.20112 1.01521 0.90358 0.97391 1.19140 0.93453 0.96032 1.07398 1.21106 0.97526 0.92716 0.97183 1.21230 0.98286 0.95723 1.04615 1.21186 0.92839 0.99527 0.96167 1.21335 1.01861 0.93300 1.09614 1.19530 0.89383 0.89550 0.94230 1.83546 1.21071 1.34215 1.75665 1.20711 0.86701 0.94459 1.45354 0.90089 1.25152 0.93311 1.04139 0.95734 1.69718 1.02518 1.38083 1.45984 0.85368 0.78914 0.78615 0.78829 1.19300 1.19170 1.18834 0.89748 0.92606 0.91557 0.93085 0.93762 0.88840 0.91396 0.96033 0.91542 0.88301 0.93346 0.82549 0.82846 0.84342 0.87570 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.53 71.98 0.69 -2.52 16 2 C 0.06 1.67 3.34 30.59 0.10 1.77 16 3 C -0.15 -3.32 9.56 71.98 0.69 -2.63 16 4 O -0.40 -13.35 9.99 -148.98 -1.49 -14.84 16 5 C 0.08 2.70 5.73 71.98 0.41 3.11 16 6 C -0.06 -2.01 5.43 29.85 0.16 -1.85 16 7 C -0.16 -6.02 5.15 -19.74 -0.10 -6.12 16 8 C -0.07 -1.99 9.68 22.25 0.22 -1.78 16 9 C -0.18 -5.09 10.04 22.30 0.22 -4.87 16 10 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 11 C -0.24 -10.66 9.17 22.39 0.21 -10.46 16 12 C 0.12 5.73 6.62 22.58 0.15 5.88 16 13 O -0.24 -12.97 7.73 -22.78 -0.18 -13.15 16 14 C -0.40 -23.57 9.95 67.92 0.68 -22.89 16 15 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 16 C 0.02 0.89 5.49 84.83 0.47 1.36 16 17 N -0.92 -55.77 13.96 21.61 0.30 -55.47 16 18 Si 0.96 46.91 28.62 68.60 1.96 48.87 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -13.08 7.11 99.48 0.71 -12.38 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.39 7.79 -2.38 -0.02 1.37 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.07 1.94 7.87 -2.39 -0.02 1.92 16 31 H 0.10 2.86 8.05 -2.38 -0.02 2.84 16 32 H 0.05 2.00 7.71 -2.39 -0.02 1.99 16 33 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.11 5.17 5.64 -2.91 -0.02 5.16 16 37 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -67.67 313.00 5.75 -61.93 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.04 Total: 16.12 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 4.11 Total: -43.46 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.30 Total: -55.47 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.66 Total: -27.99 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.96 Total: 48.87 kcal Total: -67.67 5.75 -61.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250407876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.621 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds