Wall clock time and date at job start Mon Mar 30 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48497 * 109.46913 * 269.99902 * 3 2 1 5 5 H 1.48492 * 109.46961 * 29.99772 * 3 2 1 6 6 H 1.48501 * 109.47188 * 150.00101 * 3 2 1 7 7 C 1.37884 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99467 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47214 * 180.02562 * 9 7 2 11 11 N 1.30272 * 126.28328 * 89.99934 * 10 9 7 12 12 N 1.28673 * 109.37441 * 179.73382 * 11 10 9 13 13 C 1.30265 * 109.38423 * 0.44162 * 12 11 10 14 14 C 1.50707 * 126.28297 * 179.83078 * 13 12 11 15 15 C 1.52999 * 109.47009 * 89.69006 * 14 13 12 16 16 C 1.53006 * 109.46623 * 184.99986 * 15 14 13 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46991 * 60.00378 * 17 16 15 19 19 C 1.52996 * 109.47131 * 299.99311 * 18 17 16 20 20 C 1.52997 * 109.47317 * 65.00166 * 15 14 13 21 21 O 1.34363 * 107.43878 * 359.56579 * 13 12 11 22 22 H 0.97002 * 119.99566 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47186 * 59.99779 * 9 7 2 24 24 H 1.09008 * 109.46842 * 300.00020 * 9 7 2 25 25 H 1.08994 * 109.47032 * 329.68710 * 14 13 12 26 26 H 1.08998 * 109.46579 * 209.69147 * 14 13 12 27 27 H 1.09001 * 109.47362 * 304.99435 * 15 14 13 28 28 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 29 29 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 30 30 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 31 31 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 32 32 H 1.09001 * 109.47289 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47611 * 59.99933 * 18 17 16 34 34 H 1.08996 * 109.47452 * 300.00000 * 19 18 17 35 35 H 1.09000 * 109.47054 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47153 * 299.99641 * 20 15 14 37 37 H 1.08996 * 109.46952 * 59.99813 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 7 2.7312 -4.2307 1.0496 12 7 3.5269 -5.1701 0.6754 13 6 3.5678 -5.2092 -0.6261 14 6 4.3815 -6.1611 -1.4646 15 6 3.5603 -7.4205 -1.7483 16 6 4.4278 -8.4379 -2.4923 17 6 3.6068 -9.6976 -2.7754 18 6 2.3954 -9.3339 -3.6363 19 6 1.5280 -8.3166 -2.8924 20 6 2.3492 -7.0565 -2.6094 21 8 2.7469 -4.2490 -1.0838 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8898 25 1 5.2899 -6.4330 -0.9273 26 1 4.6464 -5.6802 -2.4062 27 1 3.2203 -7.8523 -0.8070 28 1 4.7678 -8.0061 -3.4335 29 1 5.2906 -8.6972 -1.8788 30 1 4.2249 -10.4226 -3.3050 31 1 3.2671 -10.1292 -1.8340 32 1 1.8107 -10.2314 -3.8385 33 1 2.7351 -8.9024 -4.5778 34 1 1.1883 -8.7482 -1.9510 35 1 0.6647 -8.0579 -3.5055 36 1 1.7312 -6.3316 -2.0794 37 1 2.6893 -6.6247 -3.5507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256996190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:14 Heat of formation + Delta-G solvation = -8.894965 kcal Electronic energy + Delta-G solvation = -18097.766854 eV Core-core repulsion = 15261.245220 eV Total energy + Delta-G solvation = -2836.521635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.39496 -38.85973 -35.31298 -34.09733 -33.30067 -31.03055 -30.81796 -28.52599 -26.26512 -23.84510 -22.93565 -22.32236 -21.28125 -20.91389 -19.83128 -17.04374 -16.32555 -16.14928 -15.41553 -14.91660 -14.73325 -14.49441 -14.29157 -13.94254 -13.26858 -12.70154 -12.50245 -12.35079 -12.25258 -11.84473 -11.76399 -11.59932 -11.26118 -11.17020 -11.11037 -10.93451 -10.85570 -10.61044 -10.36143 -10.29496 -10.15886 -9.98633 -9.77960 -8.62180 -8.54600 -6.25183 -4.30984 1.98014 3.05677 3.20166 3.23387 3.29885 3.35969 4.30005 4.41511 4.50576 4.58369 4.73017 4.93839 5.10536 5.13152 5.17579 5.28745 5.31915 5.38329 5.38741 5.50519 5.56058 5.70014 5.75958 5.88693 5.98945 5.99538 6.01468 6.09848 6.17437 6.21936 6.29989 6.38890 6.56993 7.11872 7.20832 7.68312 7.92542 8.69261 9.14896 9.33802 10.85125 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.004351 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.840354 B = 6433.973429 C = 6661.630051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.104 3.896 10 C 0.222 3.778 11 N -0.320 5.320 12 N -0.292 5.292 13 C 0.123 3.877 14 C -0.012 4.012 15 C -0.084 4.084 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.118 4.118 21 O -0.228 6.228 22 H 0.268 0.732 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -16.410 -8.236 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.066 3.934 10 C 0.012 3.988 11 N -0.166 5.166 12 N -0.140 5.140 13 C -0.089 4.089 14 C -0.051 4.051 15 C -0.103 4.103 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.156 4.156 21 O -0.107 6.107 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.912 -16.572 -6.976 18.927 hybrid contribution 0.170 1.282 -1.135 1.721 sum 6.082 -15.289 -8.111 18.345 Atomic orbital electron populations 1.69929 1.06048 1.27605 1.49024 1.24942 0.95007 0.99467 0.94340 0.86343 0.79805 0.82168 0.78338 1.20324 1.20771 1.19603 1.20825 0.93244 0.88965 1.53277 0.92130 1.18170 0.89786 0.84548 1.00933 1.29480 0.95875 0.95360 0.78043 1.74391 1.10334 1.06019 1.25835 1.74200 1.15525 1.14975 1.09261 1.27518 0.96465 0.92975 0.91929 1.20097 0.95891 0.91081 0.98013 1.21214 0.95516 0.93871 0.99743 1.21555 0.97811 0.95185 1.00389 1.21517 0.96785 0.97193 1.00120 1.21544 0.96627 0.98785 0.98745 1.21526 0.98010 0.95650 1.00454 1.21647 0.96403 0.97537 0.99977 1.84823 1.47454 1.39215 1.39257 0.92265 0.92925 0.91223 0.87872 0.89095 0.90318 0.91615 0.91595 0.92038 0.91945 0.92268 0.92002 0.92068 0.91955 0.91832 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 2 C 0.07 1.81 5.46 -17.81 -0.10 1.71 16 3 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.60 9.09 -34.44 -0.31 -14.91 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 9 C 0.10 2.67 5.60 -29.04 -0.16 2.51 16 10 C 0.22 5.29 7.67 -12.94 -0.10 5.19 16 11 N -0.32 -7.76 12.22 32.55 0.40 -7.36 16 12 N -0.29 -6.30 12.22 32.55 0.40 -5.90 16 13 C 0.12 2.28 6.89 -12.94 -0.09 2.19 16 14 C -0.01 -0.15 5.32 -27.88 -0.15 -0.30 16 15 C -0.08 -0.93 2.18 -90.62 -0.20 -1.13 16 16 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 17 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 19 C -0.12 -1.20 5.92 -26.71 -0.16 -1.36 16 20 C -0.12 -1.39 5.02 -26.71 -0.13 -1.52 16 21 O -0.23 -4.85 10.31 5.37 0.06 -4.80 16 22 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.07 1.85 8.14 -51.92 -0.42 1.42 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.93 6.92 -51.93 -0.36 0.57 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -30.23 306.06 -6.50 -36.73 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.82 Total: -3.99 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.86 Total: -10.95 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 1.53 Total: -37.71 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.06 Total: -4.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.23 -6.50 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256996190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.834 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds