Wall clock time and date at job start Mon Mar 30 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99858 * 2 1 4 4 H 1.48490 * 109.47473 * 240.00388 * 3 2 1 5 5 H 1.48503 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47208 * 120.00079 * 3 2 1 7 7 C 1.37869 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00476 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46884 * 180.02562 * 10 9 7 12 12 N 1.30274 * 126.27763 * 89.96319 * 11 10 9 13 13 N 1.28674 * 109.37802 * 180.02562 * 12 11 10 14 14 C 1.30274 * 109.37972 * 359.97438 * 13 12 11 15 15 C 1.50703 * 126.28371 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47277 * 89.95481 * 15 14 13 17 17 C 1.54264 * 110.03132 * 292.17002 * 16 15 14 18 18 C 1.54886 * 104.19691 * 217.10410 * 17 16 15 19 19 C 1.54896 * 102.74640 * 37.94337 * 18 17 16 20 20 C 1.53869 * 110.03231 * 175.00167 * 16 15 14 21 21 O 1.34356 * 126.28319 * 270.00440 * 11 10 9 22 22 H 0.96999 * 120.00261 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46842 * 60.00415 * 9 7 2 24 24 H 1.08995 * 109.47321 * 300.00810 * 9 7 2 25 25 H 1.08998 * 109.46581 * 60.00993 * 10 9 7 26 26 H 1.08990 * 109.47483 * 300.00020 * 10 9 7 27 27 H 1.08999 * 109.46841 * 209.95855 * 15 14 13 28 28 H 1.09002 * 109.46633 * 329.95567 * 15 14 13 29 29 H 1.08996 * 110.01341 * 53.60797 * 16 15 14 30 30 H 1.09006 * 110.48643 * 335.78081 * 17 16 15 31 31 H 1.08998 * 110.48787 * 98.42490 * 17 16 15 32 32 H 1.08994 * 110.75625 * 279.63117 * 18 17 16 33 33 H 1.09005 * 110.76160 * 156.25441 * 18 17 16 34 34 H 1.09005 * 110.48397 * 203.37875 * 19 18 17 35 35 H 1.08998 * 110.48885 * 80.73883 * 19 18 17 36 36 H 1.08993 * 110.03389 * 238.57072 * 20 16 15 37 37 H 1.09004 * 110.03278 * 359.95445 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 7 1.1055 -5.6337 -1.0530 13 7 0.4898 -6.7000 -0.6795 14 6 0.4630 -6.7503 0.6220 15 6 -0.1622 -7.8357 1.4599 16 6 0.8751 -8.9249 1.7403 17 6 1.2296 -9.6658 0.4345 18 6 1.4148 -11.1399 0.8724 19 6 0.3073 -11.3210 1.9400 20 6 0.2887 -9.9773 2.6976 21 8 1.0948 -5.6565 1.0802 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6047 0.8878 26 1 2.8714 -3.6039 -0.8922 27 1 -0.5088 -7.4126 2.4027 28 1 -1.0068 -8.2679 0.9232 29 1 1.7717 -8.4831 2.1750 30 1 0.4153 -9.5811 -0.2852 31 1 2.1551 -9.2740 0.0128 32 1 2.4015 -11.2918 1.3098 33 1 1.2554 -11.8156 0.0320 34 1 0.5599 -12.1372 2.6170 35 1 -0.6558 -11.5037 1.4635 36 1 0.9013 -10.0469 3.5964 37 1 -0.7346 -9.7116 2.9630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258640427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:17 Heat of formation + Delta-G solvation = -1.822833 kcal Electronic energy + Delta-G solvation = -17696.195423 eV Core-core repulsion = 14859.980459 eV Total energy + Delta-G solvation = -2836.214964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.74704 -38.65012 -35.66858 -34.48286 -33.00955 -31.63572 -29.16706 -28.74739 -26.25960 -25.17911 -22.68177 -22.07983 -20.90317 -20.73726 -19.88255 -17.00258 -16.80236 -16.32705 -16.08334 -15.23518 -14.58055 -14.51094 -14.11671 -13.71604 -13.53653 -13.14477 -12.54131 -12.40471 -11.93784 -11.54637 -11.48754 -11.37232 -11.27908 -11.22329 -11.13889 -11.00112 -10.83898 -10.76761 -10.69187 -10.50493 -10.10632 -9.92863 -9.32973 -8.83311 -8.45443 -6.09765 -4.14881 1.62071 2.70173 2.85358 3.29578 3.34222 3.36276 4.13861 4.34539 4.38161 4.40062 4.52059 4.81971 5.03561 5.08408 5.21855 5.26347 5.26776 5.38628 5.43348 5.50294 5.56898 5.65998 5.69072 5.81407 5.87751 5.93504 6.02132 6.07793 6.10003 6.20900 6.21938 6.24324 6.62987 7.48017 7.56632 7.85502 8.21122 8.78772 8.90161 9.49957 11.01519 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.060328 B = 0.003544 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.016524 B = 7898.747834 C = 7986.283569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.025 4.025 11 C 0.196 3.804 12 N -0.305 5.305 13 N -0.286 5.286 14 C 0.137 3.863 15 C -0.012 4.012 16 C -0.091 4.091 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.118 4.118 21 O -0.227 6.227 22 H 0.264 0.736 23 H 0.027 0.973 24 H 0.021 0.979 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -20.097 5.807 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.064 4.064 11 C -0.014 4.014 12 N -0.151 5.151 13 N -0.133 5.133 14 C -0.074 4.074 15 C -0.051 4.051 16 C -0.110 4.110 17 C -0.157 4.157 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.156 4.156 21 O -0.106 6.106 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.735 -20.292 4.559 20.811 hybrid contribution 0.533 1.366 1.192 1.890 sum 1.268 -18.926 5.751 19.821 Atomic orbital electron populations 1.69962 1.06170 1.27101 1.49767 1.25018 0.94889 0.99460 0.94886 0.86551 0.79498 0.82615 0.78738 1.20025 1.21210 1.20105 1.21040 0.93123 0.90261 1.52106 0.92103 1.19155 0.93600 0.89880 0.98381 1.20714 0.97874 0.83679 1.04100 1.28904 0.96661 0.97085 0.78718 1.74400 1.13519 1.01571 1.25602 1.74264 1.15804 1.14029 1.09157 1.27714 0.98338 0.89412 0.91951 1.20285 0.97548 0.89150 0.98123 1.21825 0.97854 0.94601 0.96733 1.22464 1.02244 0.94460 0.96553 1.22505 0.98741 0.96615 0.98444 1.22364 0.99211 0.96968 0.97664 1.22186 1.01279 0.94216 0.97924 1.84792 1.56676 1.30223 1.38950 0.92670 0.95439 0.96066 0.89660 0.88085 0.88739 0.87485 0.90552 0.90510 0.91875 0.91689 0.91550 0.91785 0.91481 0.91437 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.71 4.96 -27.88 -0.14 0.57 16 10 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 11 C 0.20 4.00 7.73 -12.94 -0.10 3.90 16 12 N -0.31 -6.49 12.22 32.55 0.40 -6.09 16 13 N -0.29 -5.45 12.22 32.55 0.40 -5.05 16 14 C 0.14 2.26 7.30 -12.94 -0.09 2.16 16 15 C -0.01 -0.14 4.97 -27.88 -0.14 -0.28 16 16 C -0.09 -0.87 2.92 -89.51 -0.26 -1.14 16 17 C -0.12 -1.22 5.93 -25.07 -0.15 -1.37 16 18 C -0.13 -1.01 6.91 -24.74 -0.17 -1.18 16 19 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 20 C -0.12 -0.88 6.46 -25.61 -0.17 -1.04 16 21 O -0.23 -4.25 10.87 5.40 0.06 -4.19 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.04 8.00 -51.93 -0.42 0.62 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -31.35 311.00 -6.54 -37.88 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.83 Total: -4.31 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.96 Total: -13.26 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 1.53 Total: -36.96 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.06 Total: -4.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.35 -6.54 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258640427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.061 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds