Wall clock time and date at job start Mon Mar 30 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48501 * 109.47548 * 275.66095 * 3 2 1 5 5 H 1.48497 * 109.47308 * 35.66870 * 3 2 1 6 6 H 1.48502 * 109.47015 * 155.66263 * 3 2 1 7 7 C 1.38813 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00065 * 338.11751 * 7 2 1 9 9 N 1.36938 * 119.99987 * 158.11698 * 7 2 1 10 10 C 1.46505 * 120.00136 * 321.23353 * 9 7 2 11 11 N 1.46497 * 109.47036 * 269.99944 * 10 9 7 12 12 C 1.47051 * 124.32453 * 270.02556 * 11 10 9 13 13 C 1.53385 * 105.15595 * 195.90065 * 12 11 10 14 14 C 1.51785 * 122.52674 * 192.64988 * 13 12 11 15 15 C 1.51805 * 122.50307 * 119.10269 * 13 12 11 16 16 C 1.53684 * 103.04206 * 335.71389 * 13 12 11 17 17 C 1.34548 * 124.32182 * 90.02244 * 11 10 9 18 18 O 1.21280 * 124.91974 * 359.61910 * 17 11 10 19 19 C 1.46501 * 119.99779 * 141.23073 * 9 7 2 20 20 C 1.52998 * 117.50304 * 3.21164 * 19 9 7 21 21 C 1.52993 * 117.50059 * 294.54740 * 19 9 7 22 22 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46807 * 150.00145 * 10 9 7 24 24 H 1.08999 * 109.46860 * 29.99993 * 10 9 7 25 25 H 1.09007 * 110.30253 * 314.81575 * 12 11 10 26 26 H 1.09000 * 110.31123 * 76.87491 * 12 11 10 27 27 H 1.08996 * 117.52849 * 355.53101 * 14 13 12 28 28 H 1.08999 * 117.53005 * 140.73539 * 14 13 12 29 29 H 1.08996 * 117.52894 * 219.30549 * 15 13 12 30 30 H 1.09003 * 117.52597 * 4.50990 * 15 13 12 31 31 H 1.08997 * 110.67891 * 265.21622 * 16 13 12 32 32 H 1.09005 * 110.48339 * 142.36205 * 16 13 12 33 33 H 1.09004 * 115.54545 * 148.88090 * 19 9 7 34 34 H 1.08999 * 117.49738 * 359.97438 * 20 19 9 35 35 H 1.08991 * 117.49877 * 145.01756 * 20 19 9 36 36 H 1.09006 * 117.49945 * 214.97990 * 21 19 9 37 37 H 1.09004 * 117.50207 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3782 2.1155 -1.3932 5 1 1.5127 2.6151 0.8164 6 1 3.6025 1.4085 0.5770 7 6 2.0102 -1.2022 -0.0005 8 1 1.5286 -2.1039 0.3476 9 7 3.3056 -1.2447 -0.4426 10 6 3.7113 -0.4437 -1.6002 11 7 3.5259 -1.2263 -2.8247 12 6 4.5531 -2.0966 -3.4160 13 6 4.0734 -2.3678 -4.8475 14 6 4.6879 -3.4438 -5.7241 15 6 4.8794 -1.9627 -6.0684 16 6 2.5546 -2.1538 -4.7506 17 6 2.3939 -1.2405 -3.5518 18 8 1.3888 -0.6170 -3.2839 19 6 4.2858 -2.0913 0.2422 20 6 3.7842 -2.9607 1.3970 21 6 4.6469 -1.7293 1.6842 22 1 -0.4850 0.8401 0.0004 23 1 4.7611 -0.1675 -1.5010 24 1 3.1013 0.4583 -1.6496 25 1 5.5172 -1.5881 -3.4302 26 1 4.6264 -3.0294 -2.8569 27 1 5.5481 -3.9846 -5.3296 28 1 4.0151 -4.0247 -6.3549 29 1 4.3324 -1.5699 -6.9255 30 1 5.8655 -1.5297 -5.9002 31 1 2.0425 -3.1010 -4.5814 32 1 2.1791 -1.6706 -5.6527 33 1 5.0767 -2.4985 -0.3877 34 1 2.7250 -2.9025 1.6475 35 1 4.2453 -3.9396 1.5270 36 1 5.6754 -1.8987 2.0031 37 1 4.1556 -0.8610 2.1233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345054672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:54 Heat of formation + Delta-G solvation = 36.417605 kcal Electronic energy + Delta-G solvation = -19186.962791 eV Core-core repulsion = 16352.406057 eV Total energy + Delta-G solvation = -2834.556734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36459 -38.88186 -38.33864 -36.10963 -34.83844 -33.05275 -30.43563 -27.94977 -26.83783 -25.22822 -23.26322 -23.05043 -21.57672 -20.82109 -20.46338 -18.72492 -17.50886 -17.41263 -16.98066 -16.53380 -16.04222 -15.89946 -15.47309 -14.79014 -14.59730 -14.39260 -14.23629 -13.93468 -13.74999 -13.36676 -13.02579 -12.73277 -12.30560 -12.24457 -12.06861 -11.93825 -11.85625 -11.57329 -11.36921 -11.05638 -10.87516 -10.66655 -10.47205 -9.58467 -8.79423 -8.22116 -5.64637 1.22536 1.28635 1.39480 1.78790 2.31068 2.37536 2.87753 3.01128 3.20848 3.36306 3.41655 3.48682 3.85923 4.06717 4.14852 4.25244 4.35116 4.42194 4.51344 4.58110 4.69040 4.71234 4.72749 4.89245 4.91989 4.94406 5.01588 5.04844 5.13695 5.30301 5.36761 5.54297 5.77808 5.94134 6.16647 6.42463 6.92838 7.44935 7.57440 7.94307 8.97077 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.009033 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.479755 B = 3098.888904 C = 3786.413909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.928 3.072 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.259 4.259 8 H 0.036 0.964 9 N -0.575 5.575 10 C 0.351 3.649 11 N -0.625 5.625 12 C 0.141 3.859 13 C -0.164 4.164 14 C -0.134 4.134 15 C -0.151 4.151 16 C -0.107 4.107 17 C 0.492 3.508 18 O -0.578 6.578 19 C 0.102 3.898 20 C -0.189 4.189 21 C -0.203 4.203 22 H 0.258 0.742 23 H 0.105 0.895 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.341 -6.808 -10.365 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.197 4.197 3 Si 0.756 3.244 4 H -0.219 1.219 5 H -0.234 1.234 6 H -0.161 1.161 7 C -0.388 4.388 8 H 0.053 0.947 9 N -0.296 5.296 10 C 0.144 3.856 11 N -0.362 5.362 12 C 0.018 3.982 13 C -0.165 4.165 14 C -0.171 4.171 15 C -0.188 4.188 16 C -0.147 4.147 17 C 0.280 3.720 18 O -0.457 6.457 19 C -0.005 4.005 20 C -0.227 4.227 21 C -0.244 4.244 22 H 0.067 0.933 23 H 0.122 0.878 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.700 -6.329 -10.114 20.524 hybrid contribution -0.975 1.065 0.458 1.515 sum 15.725 -5.264 -9.656 19.189 Atomic orbital electron populations 1.69983 1.07944 1.26975 1.52934 1.25964 0.95385 1.00947 0.97369 0.86075 0.80669 0.81180 0.76443 1.21874 1.23352 1.16094 1.18303 0.87747 0.92485 1.40308 0.94674 1.44344 1.06403 1.50984 1.27905 1.21376 0.98896 0.89105 0.76185 1.49911 1.14865 1.46198 1.25272 1.21545 0.91363 0.94359 0.90891 1.21290 0.92575 1.09640 0.92977 1.22928 1.02701 0.91349 1.00079 1.23056 1.01157 0.98276 0.96262 1.21724 0.96855 0.99701 0.96407 1.21794 0.82585 0.81790 0.85814 1.90774 1.32418 1.48050 1.74477 1.21565 0.94339 0.97020 0.87535 1.23033 0.99291 0.95628 1.04784 1.23359 1.00180 0.98189 1.02634 0.93306 0.87755 0.93956 0.88378 0.90767 0.86395 0.87488 0.88151 0.86855 0.87916 0.88063 0.85107 0.92029 0.86756 0.86371 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.64 13.97 21.65 0.30 -63.33 16 2 C 0.00 0.10 5.30 84.86 0.45 0.55 16 3 Si 0.93 49.11 25.06 68.60 1.72 50.82 16 4 H -0.29 -15.60 6.69 99.48 0.67 -14.94 16 5 H -0.31 -16.27 7.11 99.48 0.71 -15.56 16 6 H -0.24 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.26 -15.28 8.95 84.03 0.75 -14.53 16 8 H 0.04 2.35 6.87 -2.91 -0.02 2.33 16 9 N -0.58 -26.98 2.63 -689.69 -1.81 -28.80 16 10 C 0.35 15.07 5.34 170.96 0.91 15.99 16 11 N -0.62 -23.91 3.18 -830.56 -2.64 -26.55 16 12 C 0.14 3.48 7.20 86.40 0.62 4.11 16 13 C -0.16 -3.50 2.43 -52.61 -0.13 -3.63 16 14 C -0.13 -1.81 10.35 30.28 0.31 -1.50 16 15 C -0.15 -2.26 10.34 30.29 0.31 -1.94 16 16 C -0.11 -3.19 6.71 30.35 0.20 -2.99 16 17 C 0.49 21.69 8.04 87.97 0.71 22.39 16 18 O -0.58 -33.49 17.59 -3.03 -0.05 -33.54 16 19 C 0.10 3.74 6.56 44.99 0.30 4.03 16 20 C -0.19 -6.88 9.80 30.62 0.30 -6.58 16 21 C -0.20 -6.97 10.36 30.62 0.32 -6.65 16 22 H 0.26 16.87 8.31 -92.71 -0.77 16.09 16 23 H 0.10 3.54 8.07 -2.39 -0.02 3.52 16 24 H 0.04 2.18 3.19 -2.39 -0.01 2.17 16 25 H 0.10 1.85 8.13 -2.38 -0.02 1.83 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.06 2.78 6.45 -2.39 -0.02 2.77 16 35 H 0.11 3.27 8.14 -2.39 -0.02 3.26 16 36 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -82.95 305.29 3.58 -79.37 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.01 Total: 12.78 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.06 Total: 9.25 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -4.16 Total: -118.68 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.72 Total: 50.82 kcal Total: -82.95 3.58 -79.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345054672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.788 kcal (2) G-P(sol) polarization free energy of solvation -82.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds