Wall clock time and date at job start Mon Mar 30 2020 18:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99527 * 2 1 4 4 H 1.48495 * 109.47259 * 269.99523 * 3 2 1 5 5 H 1.48496 * 109.47357 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.46669 * 149.99560 * 3 2 1 7 7 C 1.37874 * 120.00548 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99446 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00418 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47357 * 59.99632 * 9 7 2 11 11 O 1.45197 * 109.47335 * 180.02562 * 9 7 2 12 12 C 1.34227 * 116.99989 * 210.00024 * 11 9 7 13 13 O 1.20826 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.50697 * 119.99947 * 180.02562 * 12 11 9 15 15 C 1.53005 * 119.29533 * 250.22835 * 14 12 11 16 16 C 1.53004 * 60.34832 * 247.77015 * 15 14 12 17 17 H 1.08995 * 119.30107 * 111.29541 * 16 15 14 18 18 C 1.54297 * 118.17743 * 266.34252 * 16 15 14 19 19 C 1.54882 * 104.18375 * 40.62544 * 18 16 15 20 20 C 1.54267 * 117.41752 * 44.56878 * 14 12 11 21 21 C 1.53007 * 109.46872 * 299.99840 * 9 7 2 22 22 C 1.52999 * 117.49668 * 248.74898 * 21 9 7 23 23 C 1.52990 * 117.49755 * 180.08526 * 21 9 7 24 24 H 0.96995 * 120.00616 * 0.02562 * 1 2 3 25 25 H 1.09002 * 117.46173 * 355.35664 * 15 14 12 26 26 H 1.09003 * 117.46029 * 140.18539 * 15 14 12 27 27 H 1.09002 * 110.51624 * 281.93667 * 18 16 15 28 28 H 1.09003 * 110.47034 * 159.28863 * 18 16 15 29 29 H 1.09004 * 110.75379 * 279.59659 * 19 18 16 30 30 H 1.08997 * 110.75836 * 156.22853 * 19 18 16 31 31 H 1.08998 * 110.48272 * 283.48689 * 20 14 12 32 32 H 1.09001 * 110.48058 * 46.12135 * 20 14 12 33 33 H 1.09005 * 115.54828 * 34.41451 * 21 9 7 34 34 H 1.08996 * 117.50285 * 359.97438 * 22 21 9 35 35 H 1.09001 * 117.49802 * 145.02459 * 22 21 9 36 36 H 1.09006 * 117.50155 * 214.97498 * 23 21 9 37 37 H 1.09001 * 117.50361 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8746 -0.6799 0.8911 11 8 3.9957 -2.5628 0.0010 12 6 5.1751 -2.7922 0.5994 13 8 5.7830 -1.8792 1.1061 14 6 5.7414 -4.1881 0.6382 15 6 5.7904 -4.9394 1.9702 16 6 7.0942 -4.5029 1.2990 17 1 7.6953 -3.7193 1.7603 18 6 7.8119 -5.5105 0.3768 19 6 6.6637 -6.1874 -0.4121 20 6 5.6836 -5.0146 -0.6631 21 6 4.0220 -0.4729 -1.2482 22 6 4.7217 -1.3176 -2.3149 23 6 5.5370 -0.3679 -1.4337 24 1 -0.4851 0.8399 -0.0004 25 1 5.4797 -4.3985 2.8641 26 1 5.5497 -6.0024 1.9569 27 1 8.3559 -6.2480 0.9669 28 1 8.4873 -4.9910 -0.3030 29 1 6.1899 -6.9654 0.1866 30 1 7.0298 -6.5933 -1.3551 31 1 4.6744 -5.3902 -0.8319 32 1 6.0153 -4.4150 -1.5108 33 1 3.4139 0.3652 -1.5887 34 1 4.8187 -2.3867 -2.1266 35 1 4.5743 -1.0349 -3.3573 36 1 5.9257 0.5392 -1.8968 37 1 6.1702 -0.8119 -0.6656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345532159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:57 Heat of formation + Delta-G solvation = -34.343036 kcal Electronic energy + Delta-G solvation = -19055.791711 eV Core-core repulsion = 16185.873814 eV Total energy + Delta-G solvation = -2869.917897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58790 -38.96545 -36.59819 -34.94799 -32.74985 -31.39983 -29.15117 -28.20730 -24.39961 -22.99021 -22.28542 -21.70671 -20.05977 -19.67289 -18.78187 -17.26527 -16.63343 -16.07767 -16.04371 -15.24680 -14.93696 -13.87839 -13.82977 -13.40554 -13.21945 -12.78990 -12.59793 -12.29102 -11.94461 -11.60811 -11.41652 -11.18227 -11.16202 -11.09820 -10.94035 -10.74315 -10.35759 -10.21540 -9.96927 -9.76074 -9.60653 -9.59863 -9.29154 -8.80646 -8.67865 -6.23235 -4.25421 2.67830 3.17441 3.29365 3.35524 3.37303 3.71868 4.26850 4.36303 4.50012 4.53625 4.81663 5.03299 5.05736 5.16338 5.29539 5.39812 5.47086 5.53795 5.63331 5.68177 5.72128 5.76266 5.79807 5.88252 5.98874 6.11238 6.18292 6.19370 6.23621 6.31973 6.50284 6.73757 6.78590 6.85701 7.32910 7.50803 8.23600 8.61428 8.84680 9.33825 10.88493 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.006685 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.254384 B = 4187.281135 C = 4372.687029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.519 4.519 8 H 0.088 0.912 9 C 0.224 3.776 10 H 0.051 0.949 11 O -0.330 6.330 12 C 0.496 3.504 13 O -0.519 6.519 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.132 4.132 17 H 0.119 0.881 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.170 4.170 23 C -0.207 4.207 24 H 0.269 0.731 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 -9.877 -0.769 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.556 4.556 8 H 0.106 0.894 9 C 0.171 3.829 10 H 0.068 0.932 11 O -0.245 6.245 12 C 0.339 3.661 13 O -0.409 6.409 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.150 4.150 17 H 0.137 0.863 18 C -0.133 4.133 19 C -0.167 4.167 20 C -0.119 4.119 21 C -0.182 4.182 22 C -0.207 4.207 23 C -0.244 4.244 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.636 -9.452 -0.647 16.605 hybrid contribution 0.245 1.324 -0.133 1.353 sum 13.881 -8.129 -0.780 16.105 Atomic orbital electron populations 1.69833 1.05995 1.27413 1.49133 1.24708 0.94776 0.98559 0.94163 0.87069 0.80800 0.83629 0.78532 1.20016 1.21455 1.18067 1.20711 0.86731 0.95698 1.52488 0.89378 1.20473 0.94919 0.74710 0.92845 0.93182 1.86518 1.33679 1.35555 1.68770 1.22055 0.80200 0.89026 0.74795 1.90567 1.60421 1.45561 1.44375 1.21704 1.04015 0.93286 0.96292 1.23001 0.98733 1.00625 0.93522 1.23352 0.89208 1.01493 1.00973 0.86279 1.21963 0.97375 0.97034 0.96920 1.22540 0.96241 0.97452 1.00449 1.21834 1.00622 0.95313 0.94142 1.23420 0.92878 1.02017 0.99899 1.22766 1.04729 0.97644 0.95581 1.23260 0.95715 1.01560 1.03849 0.92061 0.87653 0.87707 0.90966 0.90656 0.90996 0.90810 0.90129 0.90543 0.87446 0.88866 0.89647 0.89967 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.34 5.44 -17.82 -0.10 2.24 16 3 Si 0.87 21.72 24.48 -169.99 -4.16 17.56 16 4 H -0.27 -6.55 6.72 56.52 0.38 -6.17 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 7 C -0.52 -14.95 9.48 -34.44 -0.33 -15.27 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 9 C 0.22 5.72 2.00 -27.88 -0.06 5.66 16 10 H 0.05 1.36 6.21 -51.93 -0.32 1.04 16 11 O -0.33 -7.62 8.31 -39.25 -0.33 -7.94 16 12 C 0.50 10.06 6.53 36.00 0.24 10.30 16 13 O -0.52 -11.59 13.88 -18.75 -0.26 -11.85 16 14 C -0.15 -2.32 2.86 -154.58 -0.44 -2.76 16 15 C -0.12 -1.54 9.61 -26.73 -0.26 -1.80 16 16 C -0.13 -1.64 6.72 -89.52 -0.60 -2.24 16 17 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 18 C -0.10 -0.92 6.77 -25.06 -0.17 -1.09 16 19 C -0.13 -1.23 6.43 -24.75 -0.16 -1.39 16 20 C -0.08 -1.05 6.42 -25.08 -0.16 -1.21 16 21 C -0.16 -3.81 4.45 -90.62 -0.40 -4.21 16 22 C -0.17 -3.34 9.80 -26.69 -0.26 -3.61 16 23 C -0.21 -4.17 9.85 -26.70 -0.26 -4.43 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.10 1.08 7.21 -51.93 -0.37 0.70 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.62 7.38 -51.93 -0.38 0.23 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.60 4.40 -51.93 -0.23 2.37 16 34 H 0.09 1.79 6.90 -51.93 -0.36 1.43 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 2.12 5.37 -51.93 -0.28 1.84 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -31.30 294.45 -7.86 -39.16 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.36 Total: 4.36 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.96 Total: -19.79 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.59 Total: -19.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.16 Total: 17.56 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.30 -7.86 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345532159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.819 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds