Wall clock time and date at job start Mon Mar 30 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17409 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46941 * 179.67944 * 4 3 2 6 6 C 1.52991 * 109.47260 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 179.97438 * 6 5 4 8 8 O 1.20829 * 119.99856 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00293 * 179.97438 * 7 6 5 10 10 C 1.45202 * 117.00174 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46556 * 329.99960 * 10 9 7 12 12 C 1.50699 * 109.46854 * 210.00166 * 10 9 7 13 13 H 1.08002 * 120.00511 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99783 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99573 * 180.27665 * 14 12 10 16 16 Si 1.86800 * 119.99781 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12 19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12 20 20 C 1.52993 * 109.47241 * 90.00021 * 10 9 7 21 21 C 1.53002 * 117.49816 * 8.74611 * 20 10 9 22 22 C 1.52997 * 117.50033 * 300.08935 * 20 10 9 23 23 H 1.09003 * 109.46914 * 180.31947 * 1 2 3 24 24 H 1.09001 * 109.47393 * 300.32294 * 1 2 3 25 25 H 1.09004 * 109.47548 * 60.32108 * 1 2 3 26 26 H 1.08997 * 109.46946 * 59.68302 * 4 3 2 27 27 H 1.08993 * 109.47247 * 299.67564 * 4 3 2 28 28 H 1.09001 * 109.47272 * 59.99688 * 5 4 3 29 29 H 1.09004 * 109.46957 * 300.00310 * 5 4 3 30 30 H 1.09004 * 109.47717 * 59.99960 * 6 5 4 31 31 H 1.09004 * 109.47278 * 299.99977 * 6 5 4 32 32 H 0.97004 * 119.99485 * 179.72881 * 15 14 12 33 33 H 1.09005 * 115.55203 * 154.41640 * 20 10 9 34 34 H 1.08995 * 117.49810 * 0.02562 * 21 20 10 35 35 H 1.09005 * 117.49503 * 145.01979 * 21 20 10 36 36 H 1.09006 * 117.50311 * 214.97932 * 22 20 10 37 37 H 1.09007 * 117.50018 * 359.97171 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6267 1.4448 -0.0081 6 6 6.1566 1.4462 -0.0087 7 6 6.6576 2.8675 -0.0173 8 8 5.8716 3.7851 -0.0219 9 8 7.9771 3.1140 -0.0188 10 6 8.3875 4.5068 -0.0266 11 1 7.6364 5.1040 -0.5438 12 6 9.7097 4.6369 -0.7379 13 1 10.1931 3.7605 -1.1439 14 6 10.3019 5.8749 -0.8713 15 7 11.4531 5.9890 -1.4968 16 14 9.4649 7.3909 -0.1710 17 1 9.9142 7.6024 1.2285 18 1 9.8225 8.5767 -0.9903 19 1 7.9926 7.1989 -0.1945 20 6 8.5318 5.0041 1.4130 21 6 8.4389 3.9648 2.5321 22 6 7.2908 4.9516 2.3063 23 1 -0.3633 -1.0277 0.0057 24 1 -0.3634 0.5188 0.8871 25 1 -0.3634 0.5088 -0.8929 26 1 4.4818 -0.5166 -0.8871 27 1 4.4818 -0.5066 0.8928 28 1 4.2628 1.9633 0.8790 29 1 4.2628 1.9533 -0.9009 30 1 6.5202 0.9279 -0.8960 31 1 6.5208 0.9376 0.8839 32 1 11.8678 6.8606 -1.5942 33 1 9.2198 5.8374 1.5559 34 1 8.2755 2.9268 2.2426 35 1 9.0656 4.1146 3.4113 36 1 7.1624 5.7501 3.0371 37 1 6.3713 4.5632 1.8682 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:03 Heat of formation + Delta-G solvation = -47.479859 kcal Electronic energy + Delta-G solvation = -17843.989364 eV Core-core repulsion = 14973.501811 eV Total energy + Delta-G solvation = -2870.487552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63529 -38.65734 -36.81873 -36.47075 -34.91552 -34.23800 -31.15963 -30.29299 -27.61539 -25.02596 -23.79202 -23.25655 -22.05236 -20.94589 -19.12060 -18.46568 -17.94535 -17.71702 -17.08432 -16.52669 -15.99396 -15.55414 -14.95551 -14.82636 -14.72500 -14.40754 -14.31513 -13.78334 -13.65608 -13.54921 -13.22506 -13.14463 -12.71028 -12.53367 -12.42687 -12.13694 -11.91838 -11.88633 -11.47502 -11.43671 -11.02642 -10.78105 -10.66889 -10.64887 -10.56197 -8.45386 -6.52938 1.20802 1.29211 1.33031 1.41104 1.68120 1.79400 2.04925 2.19462 2.82606 2.97860 3.38293 3.74303 3.88197 4.00666 4.03468 4.07879 4.10993 4.34278 4.55476 4.60771 4.67360 4.72558 4.76489 4.81089 4.82592 4.85427 4.88482 5.00232 5.10786 5.14926 5.16721 5.23213 5.28496 5.37497 5.70615 6.16960 6.50995 6.74063 6.93487 7.12713 8.70338 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035218 B = 0.004324 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.859740 B = 6473.816976 C = 6585.783503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.216 4.216 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.094 4.094 6 C -0.105 4.105 7 C 0.443 3.557 8 O -0.546 6.546 9 O -0.351 6.351 10 C 0.232 3.768 11 H 0.027 0.973 12 C -0.532 4.532 13 H 0.049 0.951 14 C 0.032 3.968 15 N -0.930 5.930 16 Si 0.936 3.064 17 H -0.253 1.253 18 H -0.283 1.283 19 H -0.257 1.257 20 C -0.201 4.201 21 C -0.150 4.150 22 C -0.189 4.189 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.275 0.725 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.585 -11.328 6.842 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.216 4.216 3 C -0.215 4.215 4 C -0.037 4.037 5 C -0.132 4.132 6 C -0.142 4.142 7 C 0.288 3.712 8 O -0.437 6.437 9 O -0.267 6.267 10 C 0.178 3.822 11 H 0.045 0.955 12 C -0.570 4.570 13 H 0.067 0.933 14 C -0.168 4.168 15 N -0.568 5.568 16 Si 0.760 3.240 17 H -0.179 1.179 18 H -0.209 1.209 19 H -0.181 1.181 20 C -0.220 4.220 21 C -0.187 4.187 22 C -0.226 4.226 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.631 -10.916 6.773 21.015 hybrid contribution 0.214 1.217 -0.169 1.247 sum -16.417 -9.699 6.604 20.179 Atomic orbital electron populations 1.19057 0.82645 1.04235 1.03953 1.23410 0.95436 1.00889 1.01893 1.23005 0.94803 1.02053 1.01620 1.18727 0.83363 0.96194 1.05382 1.21240 0.92331 0.96760 1.02884 1.21530 0.96335 0.88030 1.08340 1.24729 0.80801 0.94435 0.71213 1.90568 1.57308 1.48618 1.47238 1.86509 1.25500 1.32322 1.82368 1.19962 0.94123 0.76204 0.91953 0.95492 1.20922 1.04321 0.95144 1.36593 0.93315 1.25509 0.95011 1.01416 0.94819 1.69961 1.17949 1.26036 1.42887 0.86039 0.80165 0.78653 0.79096 1.17853 1.20921 1.18104 1.23161 1.02012 1.03275 0.93529 1.22912 1.01062 0.95902 0.98795 1.23282 0.93193 1.03316 1.02806 0.88618 0.89226 0.89342 0.87567 0.87188 0.92033 0.92627 0.85420 0.84685 0.91606 0.88599 0.88262 0.87109 0.87546 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.17 16 2 C -0.22 -4.65 14.13 31.12 0.44 -4.21 16 3 C -0.21 -4.82 13.34 31.12 0.42 -4.41 16 4 C 0.00 -0.01 5.70 28.79 0.16 0.16 16 5 C -0.09 -2.12 4.46 30.59 0.14 -1.98 16 6 C -0.11 -2.41 5.81 29.85 0.17 -2.24 16 7 C 0.44 16.27 6.91 71.24 0.49 16.76 16 8 O -0.55 -23.10 13.03 21.96 0.29 -22.81 16 9 O -0.35 -15.48 8.38 -51.42 -0.43 -15.91 16 10 C 0.23 11.74 2.00 29.85 0.06 11.80 16 11 H 0.03 1.49 6.21 -2.38 -0.01 1.47 16 12 C -0.53 -31.39 9.48 25.60 0.24 -31.15 16 13 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 14 C 0.03 1.88 5.44 84.66 0.46 2.34 16 15 N -0.93 -57.28 13.96 21.45 0.30 -56.98 16 16 Si 0.94 45.04 24.48 68.60 1.68 46.71 16 17 H -0.25 -11.29 6.72 99.48 0.67 -10.62 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 20 C -0.20 -8.96 4.45 -10.80 -0.05 -9.01 16 21 C -0.15 -5.34 9.80 30.62 0.30 -5.04 16 22 C -0.19 -6.98 9.85 30.62 0.30 -6.67 16 23 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 26 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 29 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 30 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.10 4.46 4.40 -2.38 -0.01 4.45 16 34 H 0.10 3.39 6.91 -2.39 -0.02 3.37 16 35 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 36 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 37 H 0.09 3.65 5.37 -2.38 -0.01 3.64 16 Total: -1.00 -73.09 310.64 6.66 -66.43 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.96 Total: 16.05 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.86 Total: -33.49 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.30 Total: -56.98 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.15 Total: -38.72 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.68 Total: 46.71 kcal Total: -73.09 6.66 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.954 kcal (2) G-P(sol) polarization free energy of solvation -73.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds