Wall clock time and date at job start Mon Mar 30 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38512 * 120.07921 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.01853 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.17586 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91434 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47273 * 90.00549 * 7 6 5 9 9 C 1.46895 * 111.00000 * 66.03984 * 8 7 6 10 10 C 1.46895 * 111.00438 * 189.99871 * 8 7 6 11 11 C 1.50698 * 109.47315 * 169.99767 * 10 8 7 12 12 H 1.08004 * 119.99860 * 359.97438 * 11 10 8 13 13 C 1.37872 * 119.99920 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00331 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99948 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47221 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47376 * 119.99612 * 15 13 11 18 18 H 1.48504 * 109.47117 * 239.99641 * 15 13 11 19 19 C 1.38219 * 120.16714 * 359.97438 * 6 5 4 20 20 C 1.38726 * 119.97666 * 359.76405 * 19 6 5 21 21 N 1.39968 * 120.08996 * 180.25239 * 20 19 6 22 22 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 23 23 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 25 25 H 1.07995 * 119.99121 * 0.02610 * 4 3 2 26 26 H 1.07991 * 119.91003 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47205 * 210.00396 * 7 6 5 28 28 H 1.08997 * 109.47444 * 330.00720 * 7 6 5 29 29 H 1.09003 * 109.46898 * 60.00669 * 9 8 7 30 30 H 1.09000 * 109.47461 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47474 * 300.00587 * 9 8 7 32 32 H 1.08999 * 109.46859 * 290.00097 * 10 8 7 33 33 H 1.09008 * 109.46933 * 49.99533 * 10 8 7 34 34 H 0.96996 * 120.00046 * 180.02562 * 14 13 11 35 35 H 1.08000 * 120.01267 * 180.02562 * 19 6 5 36 36 H 0.96999 * 119.99975 * 180.24996 * 21 20 19 37 37 H 0.96995 * 120.00112 * 0.25888 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 -0.0011 6 6 3.3033 3.6812 -0.0005 7 6 3.9828 5.0263 -0.0017 8 7 4.2031 5.4649 1.3829 9 6 5.1638 4.5886 2.0662 10 6 4.6437 6.8655 1.4278 11 6 4.6229 7.3532 2.8535 12 1 4.3128 6.6893 3.6469 13 6 4.9986 8.6474 3.1449 14 7 5.3757 9.4561 2.1788 15 14 4.9735 9.2518 4.9123 16 1 4.5148 8.1562 5.8036 17 1 6.3401 9.6749 5.3103 18 1 4.0449 10.4050 5.0279 19 6 4.0618 2.5257 0.0011 20 6 3.4376 1.2868 0.0071 21 7 4.2034 0.1152 0.0141 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2152 2.3193 -0.0005 26 1 1.3342 4.5114 -0.0011 27 1 4.9412 4.9488 -0.5151 28 1 3.3524 5.7514 -0.5165 29 1 6.1164 4.6111 1.5367 30 1 5.3082 4.9355 3.0894 31 1 4.7796 3.5686 2.0795 32 1 5.6569 6.9404 1.0329 33 1 3.9725 7.4770 0.8247 34 1 5.6403 10.3664 2.3838 35 1 5.1401 2.5873 0.0019 36 1 3.7656 -0.7503 0.0146 37 1 5.1719 0.1689 0.0185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021037795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:02 Heat of formation + Delta-G solvation = -30.417659 kcal Electronic energy + Delta-G solvation = -17966.194304 eV Core-core repulsion = 15128.739376 eV Total energy + Delta-G solvation = -2837.454929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13620 -39.06469 -37.56485 -35.42526 -34.56567 -31.76016 -29.79218 -29.11495 -28.60245 -27.24279 -25.37066 -23.19399 -22.68671 -21.44027 -18.92735 -18.52495 -17.98511 -17.20719 -16.77023 -16.54262 -16.14409 -15.89184 -15.65448 -15.37996 -14.88491 -14.39960 -14.33626 -13.86200 -13.79424 -13.25072 -12.92936 -12.83548 -12.66808 -12.50204 -12.43972 -12.16562 -11.88278 -11.83431 -11.77150 -11.42260 -11.20319 -10.61037 -9.37648 -8.95555 -8.19908 -8.11566 -6.29025 0.48419 0.70599 1.41894 1.42583 1.56499 2.41759 2.44698 2.86540 3.07305 3.13420 3.58353 3.93853 3.98535 4.25697 4.42001 4.47465 4.50293 4.52613 4.59969 4.69549 4.76419 4.79496 4.85352 5.04425 5.10656 5.13961 5.20482 5.31832 5.48626 5.66384 5.85284 5.89697 6.06649 6.31349 6.36879 6.64223 6.77424 6.87386 7.08585 7.40633 8.92240 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.004272 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.497661 B = 6553.148245 C = 6705.155837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.334 6.334 3 C 0.036 3.964 4 C -0.160 4.160 5 C -0.133 4.133 6 C -0.062 4.062 7 C 0.095 3.905 8 N -0.541 5.541 9 C 0.043 3.957 10 C 0.206 3.794 11 C -0.522 4.522 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.970 3.030 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.167 4.167 20 C 0.187 3.813 21 N -0.867 5.867 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.056 0.944 25 H 0.147 0.853 26 H 0.120 0.880 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.054 0.946 31 H 0.073 0.927 32 H -0.036 1.036 33 H 0.006 0.994 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.406 0.594 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -19.683 -5.261 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C -0.013 4.013 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.063 4.063 7 C -0.032 4.032 8 N -0.265 5.265 9 C -0.105 4.105 10 C 0.080 3.920 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.576 5.576 15 Si 0.794 3.206 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.191 4.191 20 C 0.083 3.917 21 N -0.409 5.409 22 H 0.079 0.921 23 H 0.137 0.863 24 H 0.075 0.925 25 H 0.165 0.835 26 H 0.138 0.862 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.092 0.908 32 H -0.019 1.019 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.235 0.765 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.406 -19.701 -5.047 21.644 hybrid contribution 0.939 0.818 0.213 1.263 sum -6.467 -18.883 -4.834 20.537 Atomic orbital electron populations 1.23235 0.76950 1.05168 1.01796 1.85905 1.22873 1.25998 1.90054 1.18517 0.90600 0.85315 1.06823 1.21158 1.00553 0.91149 1.05015 1.20695 0.93698 0.97533 1.03466 1.19414 0.93913 0.93491 0.99528 1.20985 0.98267 0.93939 0.90020 1.62035 1.46961 1.03340 1.14180 1.22208 0.92585 0.96837 0.98879 1.19427 0.91743 0.84325 0.96535 1.21491 1.43701 0.97247 0.93596 0.92036 1.25904 0.94814 0.96842 1.02052 1.70091 1.46304 1.07142 1.34022 0.85327 0.77805 0.78266 0.79172 1.18850 1.20329 1.20318 1.20357 0.99671 0.89808 1.09222 1.17126 0.87851 0.88149 0.98600 1.42199 1.08443 1.04803 1.85493 0.92146 0.86302 0.92528 0.83543 0.86173 0.95034 0.91157 0.96963 0.92704 0.90802 1.01860 0.97602 0.92668 0.85350 0.76489 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -7.27 9.74 -93.65 -0.91 -8.18 16 3 C 0.04 0.93 6.70 22.59 0.15 1.08 16 4 C -0.16 -4.13 9.04 22.35 0.20 -3.93 16 5 C -0.13 -4.07 9.69 22.29 0.22 -3.85 16 6 C -0.06 -2.04 4.88 -19.86 -0.10 -2.14 16 7 C 0.10 3.65 5.11 85.56 0.44 4.09 16 8 N -0.54 -24.60 4.74 -931.65 -4.42 -29.02 16 9 C 0.04 1.76 8.95 127.69 1.14 2.91 16 10 C 0.21 11.32 4.72 85.56 0.40 11.73 16 11 C -0.52 -30.34 8.46 25.60 0.22 -30.12 16 12 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C -0.17 -4.83 7.80 22.38 0.17 -4.66 16 20 C 0.19 4.90 6.77 38.22 0.26 5.16 16 21 N -0.87 -16.93 9.09 -51.05 -0.46 -17.39 16 22 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 23 H 0.12 1.05 8.14 -2.38 -0.02 1.04 16 24 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 25 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 26 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 28 H 0.07 2.71 7.87 -2.39 -0.02 2.69 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 2.41 6.76 -2.39 -0.02 2.39 16 31 H 0.07 2.65 6.16 -2.39 -0.01 2.63 16 32 H -0.04 -2.15 8.12 -2.39 -0.02 -2.16 16 33 H 0.01 0.35 7.93 -2.38 -0.02 0.33 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.13 3.46 8.03 -2.91 -0.02 3.44 16 36 H 0.41 6.96 8.19 -92.71 -0.76 6.20 16 37 H 0.41 6.37 8.85 -92.71 -0.82 5.55 16 Total: -1.00 -67.88 306.51 0.70 -67.18 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.50 Total: 14.90 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.68 Total: -17.75 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.60 Total: -103.12 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.91 Total: -8.18 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.88 0.70 -67.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021037795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.763 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds