Wall clock time and date at job start Mon Mar 30 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46851 * 2 1 4 4 C 1.46498 * 120.00096 * 85.16485 * 3 2 1 5 5 C 1.50694 * 109.47268 * 90.00129 * 4 3 2 6 6 H 1.08001 * 119.99887 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00296 * 179.72682 * 5 4 3 8 8 N 1.31515 * 119.99966 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99831 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47200 * 89.99842 * 9 7 5 11 11 H 1.48500 * 109.47175 * 209.99980 * 9 7 5 12 12 H 1.48503 * 109.46968 * 330.00393 * 9 7 5 13 13 C 1.34779 * 119.99908 * 265.16234 * 3 2 1 14 14 O 1.21281 * 120.00123 * 4.53916 * 13 3 2 15 15 C 1.50704 * 119.99917 * 184.52863 * 13 3 2 16 16 C 1.47206 * 112.84584 * 60.51303 * 15 13 3 17 17 N 5.06333 * 136.50492 * 2.03080 * 2 1 3 18 18 C 1.53774 * 113.61857 * 289.31198 * 15 13 3 19 19 C 1.54049 * 86.98675 * 270.83828 * 18 15 13 20 20 C 1.52998 * 113.61802 * 220.02187 * 19 18 15 21 21 C 1.53774 * 87.07684 * 334.56875 * 19 18 15 22 22 H 1.09002 * 109.47394 * 304.98480 * 1 2 3 23 23 H 1.09007 * 109.47129 * 64.98504 * 1 2 3 24 24 H 1.09005 * 109.47073 * 184.98126 * 1 2 3 25 25 H 1.08994 * 109.47294 * 240.00375 * 2 1 3 26 26 H 1.08994 * 109.46837 * 119.99809 * 2 1 3 27 27 H 1.09003 * 109.47219 * 329.99881 * 4 3 2 28 28 H 1.09004 * 109.47276 * 209.99725 * 4 3 2 29 29 H 0.96999 * 119.99362 * 180.02562 * 8 7 5 30 30 H 1.09009 * 113.61563 * 25.43573 * 18 15 13 31 31 H 1.08998 * 113.61447 * 156.33042 * 18 15 13 32 32 H 1.09004 * 113.61350 * 89.11693 * 19 18 15 33 33 H 1.08997 * 109.47094 * 157.50024 * 20 19 18 34 34 H 1.09003 * 109.47040 * 277.49218 * 20 19 18 35 35 H 1.08994 * 109.47246 * 37.49317 * 20 19 18 36 36 H 1.09005 * 113.61436 * 270.88060 * 21 19 18 37 37 H 1.09000 * 113.61722 * 139.97772 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1616 2.1075 1.2642 5 6 3.5455 1.8847 1.8174 6 1 4.2480 1.2639 1.2812 7 6 3.9168 2.4777 3.0056 8 7 5.1244 2.2828 3.4886 9 14 2.7044 3.5577 3.9292 10 1 1.9213 2.7245 4.8768 11 1 3.4452 4.6009 4.6829 12 1 1.7827 4.2062 2.9621 13 6 2.3357 1.9838 -1.1631 14 8 2.1399 1.4129 -2.2150 15 6 2.9338 3.3670 -1.1564 16 6 4.2147 3.4324 -0.4340 17 7 5.2032 3.4829 0.1235 18 6 1.9392 4.4663 -0.7477 19 6 1.5712 4.5748 -2.2396 20 6 1.3579 6.0132 -2.7153 21 6 2.9752 4.0269 -2.5448 22 1 -0.3634 0.5892 0.8420 23 1 -0.3634 0.4346 -0.9313 24 1 -0.3633 -1.0238 0.0892 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4222 1.7441 1.9779 28 1 2.0067 3.1725 1.0910 29 1 5.3853 2.6997 4.3247 30 1 1.1237 4.1061 -0.1204 31 1 2.4171 5.3614 -0.3496 32 1 0.7660 3.9045 -2.5406 33 1 1.4990 6.0635 -3.7950 34 1 0.3458 6.3320 -2.4660 35 1 2.0767 6.6688 -2.2239 36 1 3.7359 4.8022 -2.6373 37 1 2.9958 3.3122 -3.3675 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156902350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:14 Heat of formation + Delta-G solvation = 15.146015 kcal Electronic energy + Delta-G solvation = -19340.161250 eV Core-core repulsion = 16504.682110 eV Total energy + Delta-G solvation = -2835.479140 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65988 -37.70194 -35.61226 -34.89859 -32.63919 -31.10614 -29.79317 -27.69832 -25.68927 -24.89642 -22.83789 -22.54690 -20.04507 -18.75596 -17.29417 -16.98867 -15.91971 -15.63918 -15.02680 -14.47680 -13.89139 -13.62037 -13.50288 -13.17259 -12.87058 -12.62879 -12.46980 -12.28396 -12.13127 -11.88609 -11.78792 -11.70458 -11.66180 -10.99279 -10.85939 -10.74197 -10.70020 -10.54529 -10.30193 -10.23259 -10.01383 -9.55269 -9.20310 -8.64718 -7.87049 -6.14721 -4.15434 2.92661 3.16443 3.22181 3.25894 3.51664 3.63653 3.92928 4.28728 4.58526 4.64547 4.68693 4.99244 5.09191 5.16422 5.31828 5.51363 5.53924 5.67142 5.76155 5.78661 5.79499 5.84367 5.93997 6.08171 6.15631 6.21740 6.27051 6.31573 6.43408 6.48971 6.53992 6.65208 7.22622 7.45349 7.99909 8.39103 8.55711 8.70873 8.90709 9.42979 10.97716 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.010280 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.663668 B = 2723.052151 C = 3349.921743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.581 5.581 4 C 0.198 3.802 5 C -0.543 4.543 6 H 0.077 0.923 7 C 0.086 3.914 8 N -0.876 5.876 9 Si 0.860 3.140 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.547 3.453 14 O -0.554 6.554 15 C 0.001 3.999 16 C 0.203 3.797 17 N -0.371 5.371 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.139 4.139 21 C -0.104 4.104 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 4.285 -8.917 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.310 5.310 4 C 0.077 3.923 5 C -0.581 4.581 6 H 0.095 0.905 7 C -0.119 4.119 8 N -0.513 5.513 9 Si 0.687 3.313 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.333 3.667 14 O -0.433 6.433 15 C -0.006 4.006 16 C -0.116 4.116 17 N -0.045 5.045 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.196 4.196 21 C -0.143 4.143 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.863 4.081 -8.411 12.882 hybrid contribution -0.833 0.414 0.879 1.280 sum -9.696 4.495 -7.533 13.075 Atomic orbital electron populations 1.22118 0.96564 1.01544 1.01961 1.21338 0.93545 0.83009 1.03110 1.47904 1.62162 1.13661 1.07278 1.20045 0.98506 0.92577 0.81184 1.21246 0.96695 1.32695 1.07474 0.90481 1.24766 0.94733 0.95644 0.96750 1.69886 1.18115 1.43128 1.20157 0.87097 0.81911 0.81359 0.80935 1.19939 1.20919 1.18815 1.19267 0.77843 0.85865 0.83764 1.90614 1.55977 1.65633 1.31086 1.19189 0.88614 0.95298 0.97473 1.27538 0.93976 0.95622 0.94452 1.81199 1.12475 1.05734 1.05126 1.23271 0.97593 0.97053 0.97170 1.22552 0.97608 0.97591 0.95310 1.21695 1.01646 0.95190 1.01110 1.22978 0.97430 0.99548 0.94355 0.92583 0.92658 0.92136 0.90515 0.90161 0.95089 0.94195 0.92580 0.89729 0.88468 0.88493 0.92361 0.92596 0.92436 0.88956 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.96 6.15 -4.04 -0.02 1.93 16 3 N -0.58 -11.54 2.46 -175.06 -0.43 -11.97 16 4 C 0.20 4.30 3.76 -5.20 -0.02 4.28 16 5 C -0.54 -14.33 6.77 -34.44 -0.23 -14.56 16 6 H 0.08 2.34 7.95 -52.49 -0.42 1.93 16 7 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 8 N -0.88 -26.14 13.96 55.43 0.77 -25.37 16 9 Si 0.86 20.09 27.47 -169.99 -4.67 15.42 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -5.67 6.53 56.52 0.37 -5.30 16 13 C 0.55 10.68 6.38 -10.98 -0.07 10.61 16 14 O -0.55 -11.32 15.45 5.56 0.09 -11.24 16 15 C 0.00 0.02 0.65 -157.63 -0.10 -0.09 16 16 C 0.20 4.37 11.51 -20.76 -0.24 4.13 16 17 N -0.37 -9.16 17.50 42.15 0.74 -8.42 16 18 C -0.11 -1.64 5.53 -25.78 -0.14 -1.78 16 19 C -0.11 -1.37 4.09 -89.67 -0.37 -1.74 16 20 C -0.14 -1.34 9.71 37.16 0.36 -0.97 16 21 C -0.10 -1.45 6.60 -25.92 -0.17 -1.62 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 26 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 27 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 28 H 0.04 0.84 3.44 -51.93 -0.18 0.67 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.08 1.25 6.69 -51.92 -0.35 0.90 16 31 H 0.10 1.34 7.91 -51.93 -0.41 0.93 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 36 H 0.09 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.09 1.32 7.35 -51.93 -0.38 0.94 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -31.38 303.88 -5.11 -36.49 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.46 Total: -0.01 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.73 Total: 0.51 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.08 Total: -45.75 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.38 -5.11 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156902350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.633 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds