Wall clock time and date at job start Mon Mar 30 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46851 * 2 1 4 4 C 1.46498 * 120.00096 * 85.16485 * 3 2 1 5 5 C 1.50694 * 109.47268 * 90.00129 * 4 3 2 6 6 H 1.08001 * 119.99887 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00296 * 179.72682 * 5 4 3 8 8 N 1.31515 * 119.99966 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99831 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47200 * 89.99842 * 9 7 5 11 11 H 1.48500 * 109.47175 * 209.99980 * 9 7 5 12 12 H 1.48503 * 109.46968 * 330.00393 * 9 7 5 13 13 C 1.34779 * 119.99908 * 265.16234 * 3 2 1 14 14 O 1.21281 * 120.00123 * 4.53916 * 13 3 2 15 15 C 1.50704 * 119.99917 * 184.52863 * 13 3 2 16 16 C 1.47206 * 112.84584 * 60.51303 * 15 13 3 17 17 N 5.06333 * 136.50492 * 2.03080 * 2 1 3 18 18 C 1.53774 * 113.61857 * 289.31198 * 15 13 3 19 19 C 1.54049 * 86.98675 * 270.83828 * 18 15 13 20 20 C 1.52998 * 113.61802 * 220.02187 * 19 18 15 21 21 C 1.53774 * 87.07684 * 334.56875 * 19 18 15 22 22 H 1.09002 * 109.47394 * 304.98480 * 1 2 3 23 23 H 1.09007 * 109.47129 * 64.98504 * 1 2 3 24 24 H 1.09005 * 109.47073 * 184.98126 * 1 2 3 25 25 H 1.08994 * 109.47294 * 240.00375 * 2 1 3 26 26 H 1.08994 * 109.46837 * 119.99809 * 2 1 3 27 27 H 1.09003 * 109.47219 * 329.99881 * 4 3 2 28 28 H 1.09004 * 109.47276 * 209.99725 * 4 3 2 29 29 H 0.96999 * 119.99362 * 180.02562 * 8 7 5 30 30 H 1.09009 * 113.61563 * 25.43573 * 18 15 13 31 31 H 1.08998 * 113.61447 * 156.33042 * 18 15 13 32 32 H 1.09004 * 113.61350 * 89.11693 * 19 18 15 33 33 H 1.08997 * 109.47094 * 157.50024 * 20 19 18 34 34 H 1.09003 * 109.47040 * 277.49218 * 20 19 18 35 35 H 1.08994 * 109.47246 * 37.49317 * 20 19 18 36 36 H 1.09005 * 113.61436 * 270.88060 * 21 19 18 37 37 H 1.09000 * 113.61722 * 139.97772 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1616 2.1075 1.2642 5 6 3.5455 1.8847 1.8174 6 1 4.2480 1.2639 1.2812 7 6 3.9168 2.4777 3.0056 8 7 5.1244 2.2828 3.4886 9 14 2.7044 3.5577 3.9292 10 1 1.9213 2.7245 4.8768 11 1 3.4452 4.6009 4.6829 12 1 1.7827 4.2062 2.9621 13 6 2.3357 1.9838 -1.1631 14 8 2.1399 1.4129 -2.2150 15 6 2.9338 3.3670 -1.1564 16 6 4.2147 3.4324 -0.4340 17 7 5.2032 3.4829 0.1235 18 6 1.9392 4.4663 -0.7477 19 6 1.5712 4.5748 -2.2396 20 6 1.3579 6.0132 -2.7153 21 6 2.9752 4.0269 -2.5448 22 1 -0.3634 0.5892 0.8420 23 1 -0.3634 0.4346 -0.9313 24 1 -0.3633 -1.0238 0.0892 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4222 1.7441 1.9779 28 1 2.0067 3.1725 1.0910 29 1 5.3853 2.6997 4.3247 30 1 1.1237 4.1061 -0.1204 31 1 2.4171 5.3614 -0.3496 32 1 0.7660 3.9045 -2.5406 33 1 1.4990 6.0635 -3.7950 34 1 0.3458 6.3320 -2.4660 35 1 2.0767 6.6688 -2.2239 36 1 3.7359 4.8022 -2.6373 37 1 2.9958 3.3122 -3.3675 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156902350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:13 Heat of formation + Delta-G solvation = -4.552793 kcal Electronic energy + Delta-G solvation = -19341.015454 eV Core-core repulsion = 16504.682110 eV Total energy + Delta-G solvation = -2836.333344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05162 -39.06810 -37.28935 -36.57491 -34.62970 -32.48784 -30.95443 -29.48132 -26.84197 -26.08983 -24.56606 -24.02471 -21.38388 -20.05176 -19.10735 -18.76085 -17.44492 -17.00088 -16.36252 -16.26209 -15.37960 -14.89013 -14.81360 -14.73684 -14.40747 -14.23465 -13.78561 -13.66658 -13.55532 -13.37824 -13.32000 -13.11978 -12.87434 -12.62525 -12.47627 -12.11979 -11.98600 -11.83903 -11.79593 -11.64493 -11.46466 -11.14544 -10.78770 -10.64384 -9.50682 -8.25195 -6.30305 1.34048 1.35377 1.36121 1.43872 1.97490 2.03532 2.31058 2.33330 3.06513 3.16761 3.41751 3.56818 3.61443 3.76241 4.18917 4.32443 4.39844 4.54044 4.62931 4.69906 4.74181 4.78876 4.80284 4.87751 4.95847 5.00800 5.04992 5.19185 5.22122 5.35058 5.43736 5.46025 5.61101 5.65475 6.15379 6.52325 6.71871 6.87876 7.13823 7.33295 8.91097 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.010280 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.663668 B = 2723.052151 C = 3349.921743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.105 3.895 3 N -0.588 5.588 4 C 0.206 3.794 5 C -0.530 4.530 6 H 0.021 0.979 7 C 0.026 3.974 8 N -0.933 5.933 9 Si 0.922 3.078 10 H -0.262 1.262 11 H -0.293 1.293 12 H -0.226 1.226 13 C 0.544 3.456 14 O -0.565 6.565 15 C -0.021 4.021 16 C 0.226 3.774 17 N -0.439 5.439 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.098 4.098 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.261 0.739 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 5.871 -9.697 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.317 5.317 4 C 0.084 3.916 5 C -0.569 4.569 6 H 0.040 0.960 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.745 3.255 10 H -0.186 1.186 11 H -0.219 1.219 12 H -0.148 1.148 13 C 0.330 3.670 14 O -0.445 6.445 15 C -0.027 4.027 16 C -0.093 4.093 17 N -0.114 5.114 18 C -0.150 4.150 19 C -0.110 4.110 20 C -0.193 4.193 21 C -0.137 4.137 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.207 5.652 -9.226 16.312 hybrid contribution 0.276 -0.210 1.031 1.088 sum -11.931 5.442 -8.195 15.464 Atomic orbital electron populations 1.22013 0.93427 1.03322 1.02126 1.21514 0.96090 0.81750 1.02341 1.47993 1.62469 1.14502 1.06780 1.19883 0.95772 0.93810 0.82158 1.21308 0.97872 1.30915 1.06777 0.96050 1.25658 0.96475 0.97299 0.97880 1.70082 1.20964 1.45286 1.20895 0.86091 0.79894 0.79341 0.80178 1.18628 1.21943 1.14839 1.19556 0.77506 0.86480 0.83456 1.90601 1.56474 1.66088 1.31313 1.19713 0.87438 0.95565 1.00026 1.28337 0.94197 0.93669 0.93069 1.81224 1.14706 1.07952 1.07522 1.23402 0.96491 0.95871 0.99189 1.22446 0.96151 0.99390 0.93055 1.21688 1.02665 0.92990 1.01913 1.23084 0.99475 0.99485 0.91653 0.92093 0.92633 0.89644 0.91224 0.91082 0.93319 0.92578 0.92967 0.89374 0.87401 0.88413 0.91103 0.91188 0.92028 0.87377 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.11 3.56 6.15 86.38 0.53 4.09 16 3 N -0.59 -22.80 2.46 -826.16 -2.03 -24.83 16 4 C 0.21 8.61 3.76 85.63 0.32 8.93 16 5 C -0.53 -28.47 6.77 25.60 0.17 -28.30 16 6 H 0.02 1.36 7.95 -2.91 -0.02 1.34 16 7 C 0.03 1.47 5.47 84.66 0.46 1.93 16 8 N -0.93 -57.82 13.96 21.45 0.30 -57.52 16 9 Si 0.92 40.42 27.47 68.60 1.88 42.30 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.23 -8.45 6.53 99.48 0.65 -7.80 16 13 C 0.54 20.68 6.38 87.66 0.56 21.24 16 14 O -0.56 -22.53 15.45 -3.03 -0.05 -22.57 16 15 C -0.02 -0.70 0.65 -54.21 -0.04 -0.74 16 16 C 0.23 9.76 11.51 89.44 1.03 10.79 16 17 N -0.44 -22.42 17.50 20.01 0.35 -22.07 16 18 C -0.11 -2.89 5.53 31.21 0.17 -2.72 16 19 C -0.09 -1.92 4.09 -10.18 -0.04 -1.97 16 20 C -0.14 -2.02 9.71 71.98 0.70 -1.32 16 21 C -0.10 -2.52 6.60 31.12 0.21 -2.32 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.07 2.43 7.34 -2.39 -0.02 2.41 16 26 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 27 H 0.05 1.91 7.52 -2.39 -0.02 1.89 16 28 H 0.06 2.21 3.44 -2.39 -0.01 2.20 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.09 2.25 6.69 -2.38 -0.02 2.24 16 31 H 0.11 2.61 7.91 -2.39 -0.02 2.59 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.89 7.95 -2.39 -0.02 0.87 16 36 H 0.11 2.43 8.04 -2.38 -0.02 2.41 16 37 H 0.09 2.36 7.35 -2.39 -0.02 2.34 16 Total: -1.00 -71.24 303.88 6.27 -64.96 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.00 Total: 13.21 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.81 Total: 6.51 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -1.38 Total: -104.42 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.88 Total: 42.30 kcal Total: -71.24 6.27 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156902350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.410 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds