Wall clock time and date at job start Mon Mar 30 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47125 * 120.00137 * 2 1 4 4 C 1.32873 * 119.99753 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99435 * 180.27934 * 4 3 2 6 6 C 1.50704 * 109.47247 * 124.72546 * 5 4 3 7 7 O 1.21277 * 119.99743 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99701 * 179.97438 * 6 5 4 9 9 C 1.46961 * 120.59764 * 359.71829 * 8 6 5 10 10 C 1.53815 * 108.39888 * 124.75871 * 9 8 6 11 11 N 1.46961 * 108.57882 * 49.63843 * 10 9 8 12 12 C 1.36937 * 120.59671 * 124.62775 * 11 10 9 13 13 H 1.07995 * 120.00150 * 208.18027 * 12 11 10 14 14 C 1.38813 * 119.99931 * 28.17589 * 12 11 10 15 15 N 1.31620 * 119.99888 * 17.56445 * 14 12 11 16 16 Si 1.86797 * 120.00225 * 197.56262 * 14 12 11 17 17 H 1.48501 * 109.46975 * 89.99918 * 16 14 12 18 18 H 1.48503 * 109.47217 * 210.00127 * 16 14 12 19 19 H 1.48501 * 109.47099 * 330.00229 * 16 14 12 20 20 C 1.46966 * 118.81088 * 304.64690 * 11 10 9 21 21 C 1.46970 * 120.59033 * 179.97438 * 8 6 5 22 22 H 1.07994 * 120.00042 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.99557 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00074 * 180.02562 * 2 1 3 25 25 H 1.07994 * 119.99756 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.99973 * 359.97438 * 4 3 2 27 27 H 1.09002 * 109.46614 * 244.72229 * 5 4 3 28 28 H 1.09001 * 109.47443 * 4.72039 * 5 4 3 29 29 H 1.08996 * 109.61175 * 244.54126 * 9 8 6 30 30 H 1.08998 * 109.61042 * 5.05362 * 9 8 6 31 31 H 1.09008 * 109.74192 * 289.84998 * 10 9 8 32 32 H 1.08995 * 109.53356 * 169.30489 * 10 9 8 33 33 H 0.97004 * 120.00303 * 179.97438 * 15 14 12 34 34 H 1.09005 * 109.61231 * 295.48138 * 20 11 10 35 35 H 1.08998 * 109.74976 * 175.05937 * 20 11 10 36 36 H 1.09001 * 109.60806 * 354.94615 * 21 8 6 37 37 H 1.08996 * 109.60738 * 115.28943 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3931 1.2740 -0.0005 5 6 4.1465 2.5791 0.0058 6 6 5.0991 2.6036 1.1734 7 8 5.1598 1.6549 1.9264 8 7 5.8835 3.6798 1.3806 9 6 5.8251 4.8340 0.4728 10 6 5.5326 6.0931 1.3064 11 7 6.4661 6.1308 2.4408 12 6 7.2638 7.2239 2.6510 13 1 8.2169 7.1097 3.1458 14 6 6.8473 8.4786 2.2278 15 7 5.5790 8.6912 1.9477 16 14 8.0869 9.8654 2.0561 17 1 8.6469 9.8613 0.6807 18 1 7.4151 11.1646 2.3131 19 1 9.1843 9.6729 3.0378 20 6 6.5286 4.9743 3.3455 21 6 6.8167 3.7178 2.5154 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5399 0.9354 -0.0004 24 1 1.8687 -0.9353 -0.0004 25 1 1.5244 2.2094 0.0004 26 1 3.9330 0.3387 -0.0005 27 1 4.7079 2.6791 -0.9232 28 1 3.4413 3.4055 0.0949 29 1 6.7806 4.9451 -0.0397 30 1 5.0304 4.6846 -0.2582 31 1 4.5079 6.0596 1.6768 32 1 5.6719 6.9799 0.6883 33 1 5.2879 9.5682 1.6524 34 1 5.5749 4.8611 3.8611 35 1 7.3242 5.1207 4.0760 36 1 6.6770 2.8310 3.1337 37 1 7.8415 3.7480 2.1453 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001444346058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:23 Heat of formation + Delta-G solvation = 24.202228 kcal Electronic energy + Delta-G solvation = -18109.532602 eV Core-core repulsion = 15274.446169 eV Total energy + Delta-G solvation = -2835.086433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65459 -36.92136 -35.70948 -33.87567 -32.50299 -31.29109 -30.17457 -27.91721 -26.48193 -23.66605 -22.86385 -21.38136 -20.19427 -19.64122 -18.49642 -17.15377 -16.06983 -15.73266 -15.43733 -14.82155 -14.65419 -14.19692 -13.70553 -13.49155 -13.33126 -13.11425 -12.90011 -12.31231 -12.12706 -11.65828 -11.60142 -11.35981 -11.08258 -10.97665 -10.85816 -10.76822 -10.51375 -10.26295 -10.05228 -9.86938 -9.41593 -8.62658 -8.36284 -8.24829 -6.74868 -5.88968 -3.33271 1.32176 2.96573 3.04445 3.32203 3.39598 3.40661 3.52780 4.41783 4.67474 4.87683 4.98329 5.20972 5.25455 5.30306 5.38763 5.49173 5.59135 5.75670 5.77702 5.85401 5.93172 6.09997 6.17204 6.26407 6.32082 6.41489 6.46414 6.63788 6.76683 6.85556 6.91248 7.17857 7.41895 7.69467 7.90909 8.32489 8.55878 9.08782 9.71246 10.28319 11.18794 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.038333 B = 0.004438 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.272105 B = 6308.059117 C = 6715.733148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.114 4.114 6 C 0.512 3.488 7 O -0.558 6.558 8 N -0.598 5.598 9 C 0.078 3.922 10 C 0.157 3.843 11 N -0.592 5.592 12 C -0.256 4.256 13 H 0.068 0.932 14 C 0.003 3.997 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.132 3.868 21 C 0.095 3.905 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -11.328 -6.163 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.136 4.136 3 C -0.165 4.165 4 C -0.124 4.124 5 C -0.154 4.154 6 C 0.300 3.700 7 O -0.438 6.438 8 N -0.330 5.330 9 C -0.046 4.046 10 C 0.030 3.970 11 N -0.314 5.314 12 C -0.385 4.385 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.005 3.995 21 C -0.029 4.029 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.561 -11.625 -5.789 13.765 hybrid contribution 0.553 0.919 -0.136 1.081 sum -4.008 -10.706 -5.925 12.876 Atomic orbital electron populations 1.24301 0.95609 1.01796 1.01098 1.21971 0.95389 0.96683 0.99587 1.21891 0.94506 0.96860 1.03239 1.23019 0.94610 0.97788 0.96951 1.20797 0.98574 0.97713 0.98304 1.20446 0.81001 0.82220 0.86289 1.90637 1.69142 1.35637 1.48349 1.48097 1.39371 1.16794 1.28755 1.22798 1.01289 0.87827 0.92693 1.21268 0.92111 0.94208 0.89370 1.43994 1.46079 1.15131 1.26239 1.19229 0.97448 0.85105 1.36730 0.91417 1.25072 0.95568 0.97165 1.01761 1.70017 1.13118 1.22326 1.49197 0.86246 0.80654 0.81485 0.78116 1.21344 1.21721 1.20378 1.21285 0.99130 0.86960 0.92154 1.22184 0.91917 1.00377 0.88377 0.88342 0.88414 0.87105 0.86840 0.86570 0.87939 0.88295 0.91708 0.90935 0.95817 0.88167 0.93472 0.95897 0.91535 0.90046 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.43 28.88 0.42 -1.37 16 2 C -0.12 -1.27 9.83 -37.83 -0.37 -1.64 16 3 C -0.15 -1.74 9.44 -37.83 -0.36 -2.10 16 4 C -0.11 -1.34 8.46 -36.16 -0.31 -1.65 16 5 C -0.11 -1.49 4.49 -29.03 -0.13 -1.62 16 6 C 0.51 8.86 7.69 -10.99 -0.08 8.78 16 7 O -0.56 -11.28 15.44 5.56 0.09 -11.20 16 8 N -0.60 -10.76 2.94 -172.24 -0.51 -11.26 16 9 C 0.08 1.36 6.54 -3.37 -0.02 1.34 16 10 C 0.16 3.50 5.53 -3.37 -0.02 3.48 16 11 N -0.59 -14.34 2.97 -171.79 -0.51 -14.85 16 12 C -0.26 -6.76 9.58 -15.06 -0.14 -6.90 16 13 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 14 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 15 N -0.90 -25.12 11.20 55.49 0.62 -24.50 16 16 Si 0.91 20.92 29.59 -169.99 -5.03 15.90 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 C 0.13 2.77 6.67 -3.62 -0.02 2.75 16 21 C 0.10 1.77 6.59 -3.62 -0.02 1.75 16 22 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 23 H 0.10 0.86 8.05 -52.48 -0.42 0.44 16 24 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 25 H 0.11 1.25 7.87 -52.49 -0.41 0.84 16 26 H 0.12 1.48 8.05 -52.49 -0.42 1.06 16 27 H 0.10 1.11 7.90 -51.93 -0.41 0.70 16 28 H 0.10 1.21 7.41 -51.93 -0.38 0.83 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.02 5.91 -51.93 -0.31 0.72 16 31 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.10 2.46 5.99 -51.93 -0.31 2.15 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 36 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.35 308.60 -7.37 -37.72 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.53 Total: 0.73 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.15 Total: 2.82 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.39 Total: -50.62 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.35 -7.37 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444346058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.927 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds