Wall clock time and date at job start Mon Mar 30 2020 18:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47125 * 120.00137 * 2 1 4 4 C 1.32873 * 119.99753 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99435 * 180.27934 * 4 3 2 6 6 C 1.50704 * 109.47247 * 124.72546 * 5 4 3 7 7 O 1.21277 * 119.99743 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99701 * 179.97438 * 6 5 4 9 9 C 1.46961 * 120.59764 * 359.71829 * 8 6 5 10 10 C 1.53815 * 108.39888 * 124.75871 * 9 8 6 11 11 N 1.46961 * 108.57882 * 49.63843 * 10 9 8 12 12 C 1.36937 * 120.59671 * 124.62775 * 11 10 9 13 13 H 1.07995 * 120.00150 * 208.18027 * 12 11 10 14 14 C 1.38813 * 119.99931 * 28.17589 * 12 11 10 15 15 N 1.31620 * 119.99888 * 17.56445 * 14 12 11 16 16 Si 1.86797 * 120.00225 * 197.56262 * 14 12 11 17 17 H 1.48501 * 109.46975 * 89.99918 * 16 14 12 18 18 H 1.48503 * 109.47217 * 210.00127 * 16 14 12 19 19 H 1.48501 * 109.47099 * 330.00229 * 16 14 12 20 20 C 1.46966 * 118.81088 * 304.64690 * 11 10 9 21 21 C 1.46970 * 120.59033 * 179.97438 * 8 6 5 22 22 H 1.07994 * 120.00042 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.99557 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00074 * 180.02562 * 2 1 3 25 25 H 1.07994 * 119.99756 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.99973 * 359.97438 * 4 3 2 27 27 H 1.09002 * 109.46614 * 244.72229 * 5 4 3 28 28 H 1.09001 * 109.47443 * 4.72039 * 5 4 3 29 29 H 1.08996 * 109.61175 * 244.54126 * 9 8 6 30 30 H 1.08998 * 109.61042 * 5.05362 * 9 8 6 31 31 H 1.09008 * 109.74192 * 289.84998 * 10 9 8 32 32 H 1.08995 * 109.53356 * 169.30489 * 10 9 8 33 33 H 0.97004 * 120.00303 * 179.97438 * 15 14 12 34 34 H 1.09005 * 109.61231 * 295.48138 * 20 11 10 35 35 H 1.08998 * 109.74976 * 175.05937 * 20 11 10 36 36 H 1.09001 * 109.60806 * 354.94615 * 21 8 6 37 37 H 1.08996 * 109.60738 * 115.28943 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3931 1.2740 -0.0005 5 6 4.1465 2.5791 0.0058 6 6 5.0991 2.6036 1.1734 7 8 5.1598 1.6549 1.9264 8 7 5.8835 3.6798 1.3806 9 6 5.8251 4.8340 0.4728 10 6 5.5326 6.0931 1.3064 11 7 6.4661 6.1308 2.4408 12 6 7.2638 7.2239 2.6510 13 1 8.2169 7.1097 3.1458 14 6 6.8473 8.4786 2.2278 15 7 5.5790 8.6912 1.9477 16 14 8.0869 9.8654 2.0561 17 1 8.6469 9.8613 0.6807 18 1 7.4151 11.1646 2.3131 19 1 9.1843 9.6729 3.0378 20 6 6.5286 4.9743 3.3455 21 6 6.8167 3.7178 2.5154 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5399 0.9354 -0.0004 24 1 1.8687 -0.9353 -0.0004 25 1 1.5244 2.2094 0.0004 26 1 3.9330 0.3387 -0.0005 27 1 4.7079 2.6791 -0.9232 28 1 3.4413 3.4055 0.0949 29 1 6.7806 4.9451 -0.0397 30 1 5.0304 4.6846 -0.2582 31 1 4.5079 6.0596 1.6768 32 1 5.6719 6.9799 0.6883 33 1 5.2879 9.5682 1.6524 34 1 5.5749 4.8611 3.8611 35 1 7.3242 5.1207 4.0760 36 1 6.6770 2.8310 3.1337 37 1 7.8415 3.7480 2.1453 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001444346058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:22 Heat of formation + Delta-G solvation = 6.815605 kcal Electronic energy + Delta-G solvation = -18110.286543 eV Core-core repulsion = 15274.446169 eV Total energy + Delta-G solvation = -2835.840373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06807 -38.51136 -36.65547 -35.59545 -33.67002 -32.90132 -31.79986 -29.24646 -27.96470 -25.41630 -24.44071 -22.67691 -21.48206 -20.53637 -19.99634 -18.72763 -17.71948 -17.04135 -16.66148 -16.62147 -15.83413 -15.49634 -15.33501 -15.07863 -14.96294 -14.52208 -14.20477 -13.44711 -13.39307 -13.22336 -12.93913 -12.67635 -12.60917 -12.46034 -12.22458 -12.04400 -11.97202 -11.85203 -11.78563 -11.66690 -10.83345 -10.58446 -9.82565 -9.21487 -8.66260 -7.89055 -5.37210 0.47199 1.49461 1.51137 1.59613 1.64517 2.02118 2.30352 2.51938 3.25348 3.59553 3.66280 3.78415 4.10550 4.23736 4.27327 4.37214 4.38736 4.47216 4.58016 4.59113 4.70250 4.71005 4.78944 4.81723 4.97034 5.06587 5.23374 5.42839 5.54375 5.60807 5.64330 5.66663 5.77985 6.01240 6.35325 6.51606 7.10795 7.18668 7.78158 8.31687 9.15995 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.038333 B = 0.004438 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.272105 B = 6308.059117 C = 6715.733148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.139 4.139 4 C -0.127 4.127 5 C -0.106 4.106 6 C 0.509 3.491 7 O -0.590 6.590 8 N -0.604 5.604 9 C 0.094 3.906 10 C 0.161 3.839 11 N -0.610 5.610 12 C -0.267 4.267 13 H 0.068 0.932 14 C -0.045 4.045 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.272 1.272 20 C 0.132 3.868 21 C 0.105 3.895 22 H 0.116 0.884 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.000 1.000 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -11.983 -7.341 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.300 3.700 7 O -0.471 6.471 8 N -0.336 5.336 9 C -0.029 4.029 10 C 0.035 3.965 11 N -0.333 5.333 12 C -0.397 4.397 13 H 0.086 0.914 14 C -0.240 4.240 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.207 1.207 18 H -0.223 1.223 19 H -0.197 1.197 20 C 0.006 3.994 21 C -0.020 4.020 22 H 0.135 0.865 23 H 0.122 0.878 24 H 0.133 0.867 25 H 0.139 0.861 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.018 0.982 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.743 -12.306 -6.976 14.920 hybrid contribution 0.496 1.067 0.298 1.214 sum -4.248 -11.239 -6.679 13.746 Atomic orbital electron populations 1.24573 0.95213 1.03029 0.98208 1.22082 0.96076 0.96539 1.01762 1.22100 0.94405 0.97731 1.01501 1.22953 0.94945 0.97438 0.99187 1.20814 0.97965 0.98344 0.97339 1.21207 0.80714 0.81216 0.86895 1.90620 1.69980 1.36745 1.49797 1.48189 1.39520 1.17261 1.28637 1.22608 1.03069 0.85145 0.92125 1.21138 0.90538 0.95799 0.89074 1.44272 1.46102 1.15414 1.27531 1.19519 0.97744 0.86042 1.36379 0.91439 1.25781 0.97057 0.99263 1.01947 1.70160 1.14688 1.22572 1.50322 0.85245 0.78549 0.78261 0.78202 1.20749 1.22347 1.19686 1.21332 0.98471 0.87241 0.92350 1.21973 0.92659 0.98746 0.88572 0.86533 0.87809 0.86684 0.86108 0.87180 0.85214 0.87146 0.91030 0.87044 0.98174 0.90572 0.93852 0.97540 0.91042 0.89860 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 14.43 66.64 0.96 -1.84 16 2 C -0.15 -2.88 9.83 23.43 0.23 -2.65 16 3 C -0.14 -3.06 9.44 23.43 0.22 -2.84 16 4 C -0.13 -3.03 8.46 24.51 0.21 -2.82 16 5 C -0.11 -2.50 4.49 29.10 0.13 -2.37 16 6 C 0.51 16.85 7.69 87.66 0.67 17.52 16 7 O -0.59 -23.42 15.44 -3.02 -0.05 -23.46 16 8 N -0.60 -20.87 2.94 -817.25 -2.40 -23.27 16 9 C 0.09 3.11 6.54 86.57 0.57 3.67 16 10 C 0.16 7.18 5.53 86.57 0.48 7.65 16 11 N -0.61 -29.71 2.97 -697.43 -2.07 -31.77 16 12 C -0.27 -14.15 9.58 84.03 0.80 -13.34 16 13 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 14 C -0.04 -2.38 4.90 84.86 0.42 -1.97 16 15 N -0.93 -52.59 11.20 21.65 0.24 -52.35 16 16 Si 0.97 43.04 29.59 68.60 2.03 45.07 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.13 5.59 6.67 86.40 0.58 6.17 16 21 C 0.10 3.81 6.59 86.40 0.57 4.38 16 22 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 23 H 0.10 1.54 8.05 -2.91 -0.02 1.52 16 24 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 25 H 0.12 2.41 7.87 -2.91 -0.02 2.39 16 26 H 0.11 2.73 8.05 -2.91 -0.02 2.71 16 27 H 0.13 2.35 7.90 -2.39 -0.02 2.33 16 28 H 0.11 2.39 7.41 -2.39 -0.02 2.37 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 2.80 5.91 -2.39 -0.01 2.79 16 31 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.08 3.78 5.99 -2.39 -0.01 3.76 16 33 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.07 2.88 7.94 -2.39 -0.02 2.86 16 36 H 0.08 3.00 6.99 -2.39 -0.02 2.99 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -65.21 308.60 4.62 -60.59 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.03 Total: 13.63 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.84 Total: 11.57 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.23 Total: -107.39 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.21 4.62 -60.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444346058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.404 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds